LOCUS       NM_019272               3977 bp    mRNA    linear   ROD 02-FEB-2025
DEFINITION  Rattus norvegicus semaphorin 4F (Sema4f), mRNA.
ACCESSION   NM_019272
VERSION     NM_019272.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3977)
  AUTHORS   Schultze,W., Eulenburg,V., Lessmann,V., Herrmann,L., Dittmar,T.,
            Gundelfinger,E.D., Heumann,R. and Erdmann,K.S.
  TITLE     Semaphorin4F interacts with the synapse-associated protein
            SAP90/PSD-95
  JOURNAL   J Neurochem 78 (3), 482-489 (2001)
   PUBMED   11483650
REFERENCE   2  (bases 1 to 3977)
  AUTHORS   Encinas,J.A., Kikuchi,K., Chedotal,A., de Castro,F., Goodman,C.S.
            and Kimura,T.
  TITLE     Cloning, expression, and genetic mapping of Sema W, a member of the
            semaphorin family
  JOURNAL   Proc Natl Acad Sci U S A 96 (5), 2491-2496 (1999)
   PUBMED   10051670
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Nov 26, 2020 this sequence version replaced NM_019272.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB002563.1, SRR26360172.1452776.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-235               JAXUCZ010000004.1  116995208-116995442 c
            236-387             JAXUCZ010000004.1  116992788-116992939 c
            388-447             JAXUCZ010000004.1  116991785-116991844 c
            448-546             JAXUCZ010000004.1  116991477-116991575 c
            547-640             JAXUCZ010000004.1  116986968-116987061 c
            641-760             JAXUCZ010000004.1  116976786-116976905 c
            761-912             JAXUCZ010000004.1  116976540-116976691 c
            913-1091            JAXUCZ010000004.1  116975725-116975903 c
            1092-1239           JAXUCZ010000004.1  116975404-116975551 c
            1240-1462           JAXUCZ010000004.1  116975073-116975295 c
            1463-1572           JAXUCZ010000004.1  116974845-116974954 c
            1573-1733           JAXUCZ010000004.1  116974578-116974738 c
            1734-1792           JAXUCZ010000004.1  116971577-116971635 c
            1793-3977           JAXUCZ010000004.1  116969137-116971321 c
FEATURES             Location/Qualifiers
     source          1..3977
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..3977
                     /gene="Sema4f"
                     /note="semaphorin 4F"
                     /db_xref="GeneID:29745"
                     /db_xref="RGD:3658"
     exon            1..235
                     /gene="Sema4f"
                     /inference="alignment:Splign:2.1.0"
     CDS             76..2406
                     /gene="Sema4f"
                     /note="sema domain, immunoglobulin domain (Ig), TM domain,
                     and short cytoplasmic domain; ssemaphorin 4F;
                     semaphorin-W; Sema W; sema domain, immunoglobulin domain
                     (Ig), transmembrane domain (TM) and short cytoplasmic
                     domain, (semaphorin) 4F"
                     /codon_start=1
                     /product="semaphorin-4F precursor"
                     /protein_id="NP_062145.1"
                     /db_xref="GeneID:29745"
                     /db_xref="RGD:3658"
                     /translation="MLARAERPRPGPRPPPVFPFPPPLSLLLLLAILSAPVCGRVPRS
                     VPRTSLPISEADSYLTRFAASHTYNYSALLVDPASHTLYVGARDSIFALTLPFSGERP
                     RRIDWMVPETHRQNCRKKGKKEDECHNFIQILAIVNASHLLTCGTFAFDPKCGVIDVS
                     SFQQVERLESGRGKCPFEPAQRSAAVMAGGVLYTATVKNFLGTEPIISRAVGRAEDWI
                     RTETLSSWLNAPAFVAAMVLSPAEWGDEDGDDEIFFFFTETSRVLDSYERIKVPRVAR
                     VCAGDLGGRKTLQQRWTTFLKADLLCPGPEHGRASGVLQAMAELRPQPGAGTPIFYGI
                     FSSQWEGAAISAVCAFRPQDIRAVLNGPFRELKHDCNRGLPVMDNEVPQPRPGECIAN
                     NMKLQQFGSSLSLPDRVLTFIRDHPLMDRPVFPADGRPLLVTTDTAYLRVVAHRVTSL
                     SGKEYDVLYLGTEDGHLHRAVRIGAQLSVLEDLALFPEPQPVESMKLYHDWLLVGSHT
                     EVTQVNTSNCGRLQSCSECILAQDPVCAWSFRLDACVAHAGEHRGMVQDIESADVSSL
                     CPKEPGEHPVVFEVPVATVGHVVLPCSPSSAWASCVWHQPSGVTALTPRRDGLEVVVT
                     PGAMGAYACECQEGGAARVVAAYSLVWGSQRGPSNRAHTVVGAGLVGFLLGVLAASLT
                     LLLIGRRQQRRRQRELLARDKVGLDLGAPPSGTTSYSQDPPSPSPEDERLPLALGKRG
                     SGFGGFPPPFLLDSCPSPAHIRLTGAPLATCDETSI"
     exon            236..387
                     /gene="Sema4f"
                     /inference="alignment:Splign:2.1.0"
     exon            388..447
                     /gene="Sema4f"
                     /inference="alignment:Splign:2.1.0"
     exon            448..546
                     /gene="Sema4f"
                     /inference="alignment:Splign:2.1.0"
     exon            547..640
                     /gene="Sema4f"
                     /inference="alignment:Splign:2.1.0"
     exon            641..760
                     /gene="Sema4f"
                     /inference="alignment:Splign:2.1.0"
     exon            761..912
                     /gene="Sema4f"
                     /inference="alignment:Splign:2.1.0"
     exon            913..1091
                     /gene="Sema4f"
                     /inference="alignment:Splign:2.1.0"
     exon            1092..1239
                     /gene="Sema4f"
                     /inference="alignment:Splign:2.1.0"
     exon            1240..1462
                     /gene="Sema4f"
                     /inference="alignment:Splign:2.1.0"
     exon            1463..1572
                     /gene="Sema4f"
                     /inference="alignment:Splign:2.1.0"
     exon            1573..1733
                     /gene="Sema4f"
                     /inference="alignment:Splign:2.1.0"
     exon            1734..1792
                     /gene="Sema4f"
                     /inference="alignment:Splign:2.1.0"
     exon            1793..3977
                     /gene="Sema4f"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccgaggccc gcgcagtagc ggtactaagt agaggctgct ggacgcgccc cacccggcac
       61 caggcggagc cagagatgct tgccagggcc gagcggcccc gcccgggccc ccggccgcct
      121 ccggtctttc ccttcccgcc gccgctgtcg ctgctgctgc tgctggcgat actaagcgcc
      181 ccggtgtgcg gccgcgtccc ccgctcagtg cccagaacct cgctgcccat ctccgaggct
      241 gactcctatc tcacccggtt tgcagcgtct catacgtaca attactctgc tctccttgtg
      301 gatcctgcct cccacacact ttacgtcggt gcacgggata gcatcttcgc tttaaccctc
      361 cccttctctg gggaaagacc ccgaaggatc gactggatgg tacctgagac tcacagacag
      421 aactgcagga agaaaggcaa gaaagaggac gaatgtcaca attttatcca gattctcgcc
      481 attgtcaatg cctctcacct cctcacgtgc ggcaccttcg cttttgatcc gaagtgcggg
      541 gttattgatg tgtccagttt ccagcaggtt gaaagacttg agagcggccg ggggaaatgt
      601 ccttttgagc cagctcaacg gtcagcagct gtaatggctg ggggcgtcct ctacaccgcc
      661 actgtgaaga acttcctggg gactgagccc atcatctccc gagctgtggg tcgagctgag
      721 gactggattc gaacagagac cttgtcatcc tggcttaatg ctccagcctt tgtcgcagct
      781 atggtcctga gcccagctga gtggggggat gaagatggag acgatgaaat cttttttttc
      841 ttcacggaga cctcccgagt gttggactcc tatgagcgca tcaaggtccc aagagtggcc
      901 cgagtgtgtg cgggggacct tgggggcagg aagacccttc agcagagatg gacgacgttt
      961 ctgaaggctg acctgctgtg cccagggccc gagcatggcc gggcctccgg ggttctgcag
     1021 gctatggcag agcttcggcc tcagcctgga gcgggaaccc ccatctttta tgggatcttt
     1081 tcctcccagt gggaaggagc tgccatctct gctgtgtgtg ccttccgacc ccaagacatc
     1141 cgggcagtgc tgaatggtcc ctttagagag ctaaaacatg actgcaacag gggactgcct
     1201 gtcatggaca acgaggtgcc ccagcccaga cctggagagt gcatcgccaa caacatgaag
     1261 ctccagcagt ttggatcctc actctccctg ccagaccgcg tgctcacctt tatcagagac
     1321 caccctctca tggacaggcc cgtgttcccg gctgacggcc gccccctgct ggtcactaca
     1381 gatacagcct atctcagagt cgtggcccac agggtgacca gcctctcagg gaaagaatat
     1441 gacgtgctct acctggggac agaggatgga cacctccacc gggctgtgcg cattggagct
     1501 cagctcagtg tcttggagga tctggccttg ttcccagaac cacagccggt tgagagcatg
     1561 aaattgtacc acgattggct cctggtgggc tcccatactg aggtgacaca agtgaacacc
     1621 agcaactgtg gccgtctcca gagctgctcg gagtgtatcc tggcccagga ccccgtgtgc
     1681 gcctggagct tccggcttga tgcttgtgtg gcccacgccg gcgagcaccg cgggatggtt
     1741 caagatatag agtcagcgga tgtctcttct ttgtgtccaa aagaacctgg agaacatccc
     1801 gtagtgtttg aagttccggt ggctactgtg ggccacgtgg tcctgccatg ttcccccagt
     1861 tctgcctggg catcctgtgt gtggcaccag cccagtggag tgactgcgct cactccccgg
     1921 agggatggac tagaggtggt ggtgacccca ggggccatgg gggcttatgc ttgcgagtgt
     1981 caggagggtg gagccgcccg cgtggtggct gcttatagct tggtgtgggg cagccagcgg
     2041 ggaccctcaa accgggccca caccgttgtg ggggctggat tggttggctt tctcctgggt
     2101 gttcttgcag catccctcac tctcctcctg attggtcgcc gtcagcagcg tcggcgacag
     2161 agggagcttc tagctagaga caaggtgggc ttagatctgg gggctccacc ttctgggacc
     2221 acaagctata gtcaggaccc tccctctcct tcgcctgaag atgaacggct gcccctggcc
     2281 ctgggtaagc ggggcagtgg ttttggtggc ttccctccac ccttcctgct ggattcttgc
     2341 ccaagcccag cccacatccg gctcactggg gcgcctctag ccacgtgtga tgagacctcc
     2401 atctaaagcc ggggaaaatg actgccagcc atgagcagtc tctggaacta gtggctacca
     2461 agaccatgat catggctgct cctttctctt ggagtctgtg tgttcacaca ttagtgtctg
     2521 tcctctggac ctggacctgg cctttgccca gattcctgat tctcatgaga gatcaaccct
     2581 gtaaccttct gcgatggcct cttgtcttgg gcccatcagc ttgtggggtg gagtaaggac
     2641 ataggccccg gaaagggaat cagtgtggag gtagttgggg cgtgtgtgcc ctgcgtcctt
     2701 gtggtggctg tatgatttcc cagtctgctg actctgggga gcgcatgatc ccctgactgc
     2761 cttgagatct ctcccaactc agtttcccct tgctctggaa gagtgtgtgt ctatacactg
     2821 gtgtgcctag aaggcctgtc catgtgtgca tggacgacag ggccggtgcc tcggtgcttt
     2881 tggggagtcg gagagaaagg ttggaatggg ggacaactta accctcggta gccagtgagg
     2941 gaaaccacat gcccgtcccc atcaccccac agcgcttctt taactttgag caaagttccc
     3001 aaagtgacct tctgggtggg aagggcagca ggacatgtgg cccccgtcct tctccttgtc
     3061 tttcccttct ggctgccacc actgccgtgc caccgctgcg ctttccctgg ctggagtgga
     3121 ggctgagtcc tctgtccttg gtttccattt aaaatgaact tcacaacatt ctaaatattg
     3181 ggggatgaca aatgactttt ttccccagaa aagtgtgtag gaaatacaag caggttaaag
     3241 aagatttgcc tcagtgactt tcacccttgc cctaaagcag gagtccctca gctagcgtct
     3301 gtggactccc tgaaattgta tgcgtctgtg gactccctga aattgtatgc aaagtgtctg
     3361 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tttgcgtgca tgtgtgcatg
     3421 tgtgtttgat ggctttcatc agattctcaa ggccttaatg aggttaaagg accacggcct
     3481 atagtcacca cacttgggcc acatggagga ggtgttgctc tctgaggcag ttcctccctg
     3541 gcctgcctga ggccagcccc tggacacatt gctgctggag accccacatc tctccagaac
     3601 ttggaagcta ggctctgcgc gtgcttgaag gcaccaccat ctcccttctt gcttcattct
     3661 cctgtgtgct ctgcctctgc tcagtcctgc tcttggcctg tgaatgtgcc tcgcccgtcc
     3721 ctggtggggg acctcaaacc ccagtgctga tgctaccctt tccagtggga gtttctgttc
     3781 tgctttcctt gacagcagcc tgtgaactac tcacgagtcc ccttggtttg gagttcccgg
     3841 tggctttgag taggatcttt ggcgtggcat ctaacctagc agcattgatc gttcattgta
     3901 aagtggggat atacctacct cagggttgct gcaaggatca aacgaggaaa cgtataaata
     3961 aagcattacc cacagca
//
