LOCUS       XM_039095650            3441 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus semaphorin 4D (Sema4d), transcript
            variant X12, mRNA.
ACCESSION   XM_039095650
VERSION     XM_039095650.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095650.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3441
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3441
                     /gene="Sema4d"
                     /note="semaphorin 4D; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 18 ESTs, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 79 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:306790"
                     /db_xref="RGD:1310554"
     CDS             573..2774
                     /gene="Sema4d"
                     /codon_start=1
                     /product="semaphorin-4D isoform X5"
                     /protein_id="XP_038951578.1"
                     /db_xref="GeneID:306790"
                     /db_xref="RGD:1310554"
                     /translation="MKMCAPVRGLFLALVAVWRTAVAFAPVPRITWEHGEVGLVKFHE
                     PGIFNYSSLLMSEDKDTLYVGAREAVFAVNALDISEKQHEVYWKVSEDKKSKCAEKGK
                     SKQTECLNYIRVLQPLSSTSLYVCGTNAFQPTCDHLNLTSFKFLGKSEDGKGRCPFDP
                     AHSYTSVMVGGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIH
                     KSPDGTEAEDDKVYFFFTEVSVEYEFVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLK
                     ARLICSRPDSGLVFNILQDVFVLRAPGLKEPVFYAVFTPQLNNVGLSAVCAYTLSTVE
                     AVFSRGKYMQSATVEQSHTKWVRYNGPVPTPRPGACIDSEARAANYTSSLNLPDKTLQ
                     FVKDHPLMDDSVTPIDNRPKLIKKDVNYTQIVVDRTQALDGTFYDVMFLSTDRGALHK
                     AVILAKEVHVVEETQLFQDFEPVLSLLLSSKKGRKFVYAGSNSGVVQAPLAFCGKHSS
                     CEDCVLARDPYCAWSPAIKACVTLHQAEGSSRGWIQDMSGDTSSCLASSPKSFPPPGS
                     SLSCLGPDSSSPRSPWSALASGPNSRKQVALLPPFLSDQAQRVQALGTFYLFCQATGP
                     ADIRFIWEKNRRVLETCVPMQTHALPDGRAHALSWLRDTIQETTEYSCSVLSSAGNQT
                     SKVHVTVMRHEALQQEKWNQELAAWRLVAGEHDRLMQGWRKAWESCSKDTF"
ORIGIN      
        1 gagagggggt ggggcctgtg cgctcgcccc gcgccctcct tccccacgcc ggcctccgcg
       61 ccctgtcgcg ccgcagcatc tccgcgtctc ccggcctccc cggctcaacc tcctggcgcc
      121 gtccgcctct gtcgtcgctg ccaccaacgc cgccgccatt cttggcgcgg agctggcctg
      181 gccggtcccc gccgagagcc gccgcgagtc ggacgcacgc tccagatcct gctaatacct
      241 cggaaacaca gccaagttct ggataccggc atgtctgacg acactaatcc ctagagatgt
      301 cttcctgaag cttcccttct agaggtgcca ggaacaaacc ccagagactc aacacggcac
      361 aggtcggaag ggaacaacgc ctttggcatg aggttgtaaa agtggccttt gctaacctga
      421 catgtgggga ctcaagaacc ccactcccta tgggctccag tctgtgctgc tggccccagc
      481 tctggggctc tgagaggttc ctgctgctac accacagcag cccactgcca ttcatgtgtg
      541 tctgttgctg aaggcctcgg tggcccctgc ccatgaagat gtgtgccccc gtcagggggc
      601 tgttcttggc cctggtggct gtgtggagga ccgcggtggc attcgcccct gtgcctcgga
      661 tcacctggga gcacggagag gtaggtctgg tgaagtttca cgagccaggc atctttaact
      721 actcttcctt gctgatgagt gaagacaaag acactctgta tgtgggtgcc cgggaagctg
      781 tctttgcagt gaatgcgctg gacatctctg agaagcaaca tgaggtatac tggaaggtct
      841 ctgaagacaa aaaatccaag tgcgcagaga aggggaaatc aaagcagacg gagtgcctta
      901 actacatccg agtgctgcaa ccgcttagca gcacttccct ctacgtgtgt gggaccaatg
      961 cgttccagcc cacctgtgac cacctgaact tgacctcttt caagtttctg gggaaaagcg
     1021 aagatggcaa aggaagatgc cccttcgacc ccgcccatag ctacacatcc gtcatggtcg
     1081 ggggagagct ctactctggg acttcatata atttcttggg cagcgaaccc atcatctctc
     1141 gaaactcttc ccacagtccc ctgaggacag agtacgccat cccttggcta aacgagccta
     1201 gcttcgtctt tgctgacgtg atccacaaga gcccagatgg tacagaggct gaggatgaca
     1261 aggtctactt cttctttacg gaggtgtccg tggagtacga gttcgtcttc aagttgatga
     1321 tcccgcgagt tgccagggtg tgcaagggcg accagggcgg cctgcggact ttgcaaaaaa
     1381 agtggacctc cttcctaaag gccagactga tctgctccag gccagacagt ggcctggtct
     1441 tcaacattct tcaagatgtg tttgtgctga gggccccggg cctcaaggaa cctgtgttct
     1501 atgcggtctt caccccacag ctgaacaacg tgggtctgtc agcggtctgt gcctacacgc
     1561 tgtccacggt ggaggccgtc ttctcccgag gaaagtacat gcagagtgcc acagtggagc
     1621 agtctcacac caagtgggta cgctacaatg gcccagtgcc cactccccgg cctggagcgt
     1681 gtatcgacag tgaggcccgg gcagccaact acaccagctc cttgaatctc ccagacaaaa
     1741 cgctgcagtt tgtcaaagac caccctttga tggacgactc ggtgacgcca atagacaaca
     1801 ggccgaaact gatcaaaaaa gatgtcaact acacccagat agtggtagac aggacccagg
     1861 ccctggatgg gaccttctac gacgtcatgt tcctcagcac agaccggggc gctctgcata
     1921 aagctgtcat ccttgcaaaa gaggtacacg tggttgagga gacccaactc ttccaggact
     1981 tcgaaccggt cctgtctctg ctgctatcat caaagaaggg gaggaagttt gtctatgctg
     2041 gctccaactc aggagtggtc caagctcccc tggccttctg cggaaagcac agtagctgtg
     2101 aagactgtgt gctagcacgg gacccctact gcgcctggag cccagccatc aaggcctgtg
     2161 ttaccttgca ccaggcagag ggctctagca ggggctggat tcaggacatg agtggcgaca
     2221 cgtcctcgtg cctggcctca tctcctaagt ccttccctcc tcctggctcc tctctgtcct
     2281 gtctgggccc tgactcatct tctcccagaa gcccttggtc ggccttggcc tcagggccca
     2341 acagccgtaa gcaggtcgcc ttgctgccac ccttcttgag tgaccaggca cagcgggtgc
     2401 aggcgctggg gaccttctac ctcttctgcc aggccacagg tccagcagac atccgcttca
     2461 tctgggagaa gaacaggcgt gtcctggaga catgtgtacc tatgcagacc catgcgctgc
     2521 ctgatggcag ggcccatgcc ctcagctggc ttcgggacac catccaagaa accacggaat
     2581 acagctgctc tgtcctctcc tcagcaggga accagacctc aaaggttcac gtcactgtga
     2641 tgagacatga ggcactacag caggaaaagt ggaaccagga gcttgctgca tggcgcctgg
     2701 tggctgggga gcatgaccgg ctgatgcagg gctggaggaa ggcatgggaa agctgcagca
     2761 aggatacctt ctagccgcct gagacagcgc tcagtggatc ccacgtgacc tcgttggcag
     2821 cagctgcaga tgtacgtggt gaaggcacag cacccacagc gccaagcttc tgtgtcttgg
     2881 ctggctccat acagcgtttg ccacagcctg agtgtccctt ctagaggctg ggaatcgcaa
     2941 ggcttgaact gcacaggcct gagacagaga gcaagacctc ctaacatgta gcagaaagct
     3001 aagcctgcct ggcagacagg gagctgagct gtttaggagg ctccccccac cccaccccca
     3061 gcagatgaca gagcagtccg tgaaggctaa cccgatggca gccaccctgc attcttccca
     3121 ggacttcatg cactcctgct cctcccccag ggtcagcaca gctaacctcg ctccggttct
     3181 gctgatgtgg ccacccagga acaggttgat ctactgggat aggagagctg agactccaca
     3241 tgaggatatt ttgccttaaa ccttgagtga tgatgaagtt gctctttgct tatctcagaa
     3301 cccaaggcta ttttccaaag cacagtgctt cccacctgtt cactctgtca gcgctccgct
     3361 tctgaggtag aaaagccaaa caggtcaatt atgcaaatct cctggtgccg tattaaactg
     3421 ttttccagtg ctgagttagc a
//
