LOCUS       NM_001100882            3626 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus semaphorin 3G (Sema3g), mRNA.
ACCESSION   NM_001100882 XM_001062426 XM_224613
VERSION     NM_001100882.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3626)
  AUTHORS   Gonzalez-Begne,M., Lu,B., Han,X., Hagen,F.K., Hand,A.R.,
            Melvin,J.E. and Yates,J.R.
  TITLE     Proteomic analysis of human parotid gland exosomes by
            multidimensional protein identification technology (MudPIT)
  JOURNAL   J Proteome Res 8 (3), 1304-1314 (2009)
   PUBMED   19199708
REFERENCE   2  (bases 1 to 3626)
  AUTHORS   Taniguchi,M., Masuda,T., Fukaya,M., Kataoka,H., Mishina,M.,
            Yaginuma,H., Watanabe,M. and Shimizu,T.
  TITLE     Identification and characterization of a novel member of murine
            semaphorin family
  JOURNAL   Genes Cells 10 (8), 785-792 (2005)
   PUBMED   16098142
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On or before Dec 16, 2009 this sequence version replaced
            XM_001062426.1, XM_224613.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.58118.1,
                                           SRR26643429.49774.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-155               JAXUCZ010000016.1  6420025-6420179
            156-316             JAXUCZ010000016.1  6422661-6422821
            317-318             JAXUCZ010000016.1  6422932-6422933
            319-379             JAXUCZ010000016.1  6422934-6422994
            380-499             JAXUCZ010000016.1  6423224-6423343
            500-590             JAXUCZ010000016.1  6423616-6423706
            591-595             JAXUCZ010000016.1  6423820-6423824
            596-707             JAXUCZ010000016.1  6423825-6423936
            708-853             JAXUCZ010000016.1  6424102-6424247
            854-968             JAXUCZ010000016.1  6424444-6424558
            969-1038            JAXUCZ010000016.1  6424671-6424740
            1039-1183           JAXUCZ010000016.1  6425035-6425179
            1184-1415           JAXUCZ010000016.1  6425389-6425620
            1416-1507           JAXUCZ010000016.1  6425710-6425801
            1508-1510           JAXUCZ010000016.1  6426717-6426719
            1511-1549           JAXUCZ010000016.1  6426720-6426758
            1550-1784           JAXUCZ010000016.1  6428070-6428304
            1785-1915           JAXUCZ010000016.1  6428548-6428678
            1916-1919           JAXUCZ010000016.1  6429945-6429948
            1920-3626           JAXUCZ010000016.1  6429949-6431655
FEATURES             Location/Qualifiers
     source          1..3626
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p16"
     gene            1..3626
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /note="semaphorin 3G"
                     /db_xref="GeneID:290562"
                     /db_xref="RGD:1306079"
     exon            1..155
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..2380
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /note="sema domain, immunoglobulin domain (Ig), short
                     basic domain, secreted, (semaphorin) 3G"
                     /codon_start=1
                     /product="semaphorin-3G precursor"
                     /protein_id="NP_001094352.1"
                     /db_xref="GeneID:290562"
                     /db_xref="RGD:1306079"
                     /translation="MARCSAWAICCLLGSLLFHMGSPNPGPSTSVPRLRLSYRDLLTT
                     NRSAIFLGPRGSLDLQVMYLDEYRDRLFLGGRDALYSLRLDQAWPDPREVLWPPQPGQ
                     KVECVRKGKDPLTECANFVRVLQPHNRTHLLACGTGAFQPICTFITVGHRGEHVLHLD
                     PSSIENGRGRCPHEPSRPFASTFVGGELYTGLTADFLGREAMIFRSGGPRPALRSDSD
                     QSLLHDPRFVMAARIPDNSDRDDDKVYFFFSETVPSPDGGPGHVTVSRVGRVCVNDAG
                     GQRVLVNKWSTFLKARLVCSVPGPGGAETHFDQLEDVFLLWPKAGKNLEVYALFSTVS
                     AVFRGFAVCVYHMVDIWEVFNGPFAHRDGPQHQWGPYGGKVPFPRPGVCPSKMTAQPG
                     RPFGSTKDYPDEVLQFVRGHPLMFQPVRPRRGRPVLVKTHLAQQLCQIVVDRVEAEDG
                     TYDVIFLGTDSGSVLKIIALQGSGLPEPEEVVLEELQVFKVPTPITEMEISVKRQTLY
                     VGSPLGVARLQLHQCETYGSACAECCLARDPYCAWDGTSCARYRPSSGKRRFRRQDIR
                     HGNPAVQCLGQGQSQDKASGLVTRVFGTEHNSTFLECRPKSPQAAVRWFLQRPGDKGA
                     DQVKTDERVVQTDQGLLFRRLSRLDAGNYTCTTLEHGFSQTVVRFALEVIAAVQLDSL
                     FLREPRLEEPSAWRSVASASPKTWYKDILQLTGFANLPRVDEYCERVWCRGVGERSGS
                     FRGKGKQAKGKSWAGLELGRKMKSRVQAEHNRTPREVEAT"
     exon            156..316
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /inference="alignment:Splign:2.1.0"
     exon            317..379
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /inference="alignment:Splign:2.1.0"
     exon            380..499
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /inference="alignment:Splign:2.1.0"
     exon            500..590
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /inference="alignment:Splign:2.1.0"
     exon            591..707
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /inference="alignment:Splign:2.1.0"
     exon            708..853
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /inference="alignment:Splign:2.1.0"
     exon            854..968
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /inference="alignment:Splign:2.1.0"
     exon            969..1038
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /inference="alignment:Splign:2.1.0"
     exon            1039..1183
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /inference="alignment:Splign:2.1.0"
     exon            1184..1415
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /inference="alignment:Splign:2.1.0"
     exon            1416..1507
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /inference="alignment:Splign:2.1.0"
     exon            1508..1549
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /inference="alignment:Splign:2.1.0"
     exon            1550..1784
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /inference="alignment:Splign:2.1.0"
     exon            1785..1915
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /inference="alignment:Splign:2.1.0"
     exon            1916..3626
                     /gene="Sema3g"
                     /gene_synonym="CSG53; RGD1306079"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagcaggatc agagggcagc tcatctttcc ccccagcatg gcccgctgct ccgcttgggc
       61 catctgctgc ctcctgggga gccttctgtt ccacatgggc agcccgaacc ctggtcccag
      121 caccagtgtg cctcgtctgc ggctctccta cagagatctc ctgactacca accgctctgc
      181 catctttctg ggtccacggg gctccctaga cctccaagtc atgtacctgg atgagtatcg
      241 ggaccgcctc tttctgggag gccgagatgc cctttactct ctgagactgg atcaggcatg
      301 gccagatccc cgggaggtct tgtggccgcc gcagcccgga cagaaggtgg aatgtgtccg
      361 aaagggaaaa gaccctttga ccgagtgtgc caacttcgtg cgggtcttac aaccccacaa
      421 ccggacccat ctgctggcct gcggcactgg cgccttccag cccatctgca ccttcatcac
      481 agtggggcat cggggggagc atgtgctcca cttggatcct agcagcatcg aaaatggaag
      541 ggggcgttgc ccacacgagc ccagccgtcc cttcgccagt acctttgtag gtggggagct
      601 gtacacgggc ctcactgctg atttcctcgg acgtgaggcc atgattttcc ggagtggggg
      661 tccccgacca gccctgcgtt ctgactctga ccagagcctc ctacatgatc cccggtttgt
      721 gatggctgct cggatcccag ataactccga ccgggatgat gacaaagtgt acttcttctt
      781 ctctgagact gtcccttcac cagatggtgg cccaggtcat gtcaccgtca gccgcgtggg
      841 tcgagtctgt gtgaatgatg ctggtggcca gcgggtgctg gtgaataaat ggagcacgtt
      901 cctcaaggcc aggctggtat gctctgtgcc tggccctggc ggggctgaga ctcactttga
      961 ccagctggag gatgtgttcc tgctgtggcc aaaggcaggg aagaacctcg aggtgtatgc
     1021 gctgttcagc actgtcagtg ctgtgttccg gggctttgct gtctgtgtgt accacatggt
     1081 agacatctgg gaggtcttca acgggccctt cgctcaccga gatggccctc aacatcagtg
     1141 gggaccctat gggggcaagg tgcccttccc ccggcctggt gtgtgtccca gcaagatgac
     1201 cgcacagccc ggccgaccct ttggcagcac caaggactac ccggatgagg tgctgcagtt
     1261 tgtccgaggc cacccgctca tgttccagcc tgtgaggcct cggcgtggcc gccccgtcct
     1321 ggtcaaaact cacctggctc agcaactgtg ccagatcgtg gtggacagag tggaggctga
     1381 ggatgggacc tacgatgtca tcttcctagg gactgattca ggttctgtgc tcaaaatcat
     1441 cgctctccag ggtagtggct tacccgaacc ggaagaggtg gttctggagg agctccaggt
     1501 gtttaaggta ccaacaccca tcactgagat ggagatctct gtcaaaaggc aaacgctgta
     1561 tgtgggctct ccactgggcg tggcccggct gcagctgcac cagtgtgaga cttatggcag
     1621 tgcctgcgct gagtgctgcc tggcccggga cccatactgt gcttgggacg gcacttcctg
     1681 tgcccgctac cgccccagct cgggcaagcg caggttccga cgacaggaca tccgacatgg
     1741 caatcctgct gtgcagtgtc tgggccaggg ccagagccaa gacaaagcct cgggactggt
     1801 gaccagagtc tttggcacag agcacaacag taccttcctt gagtgccggc ccaagtctcc
     1861 ccaggctgca gtgcgctggt tcttacaaag gccaggggat aagggggctg accaggtgaa
     1921 gacagatgag cgagttgtgc agacggacca ggggcttctg ttccgaaggc tcagccgcct
     1981 tgatgcaggg aactacacct gtaccactct ggagcacggc ttctcccaga ccgtggttcg
     2041 ttttgccctg gaggtgattg cggctgtgca gctggacagc ctgttccttc gggagccaag
     2101 gctggaggag ccctcagcct ggcgaagtgt ggcttctgcc tcacccaaga cttggtataa
     2161 ggacatcctt cagctcactg gtttcgccaa cctgccccgc gtggatgagt actgcgaacg
     2221 tgtgtggtgc aggggtgtcg gggagcgctc gggctccttc cgcggaaagg gaaagcaggc
     2281 gaagggcaag agctgggcgg ggctagagct gggcaggaag atgaagagcc gggtgcaggc
     2341 tgagcacaat cggacccccc gggaggtaga agccacatag aagatggctg aggtgggggt
     2401 ggtcggactg ggctgggaga ctcaacaacc tctctctccc acccggctag gaaaaggagt
     2461 ccaggacgcc tgattacctc ttagagaaaa tctctaccac ctacaggaaa gaccaggggc
     2521 tggtgggagg ggccttgcat ctcagcctac tcccggccct tctctgtgtt ctcagtccca
     2581 ggctggaact ggcacctcca gaccacttgt agtcccaagg ggcacgctat ttgttctcag
     2641 agatggtgtg gcttccggag cacatttccg gttgtgccca gaggcaagtt gggtgggttt
     2701 ttcccagctt gccaaacaat ggccattctg agtgaccctc tgagtgggtg tacgggtggc
     2761 tctgaggggg tatattggga gtccgtcaga ggaggggaaa gtagattcct aaggtagtac
     2821 ccgttaagaa actcttgccc caacagaggt gtgagagaag gtgggaggcg ctgcggaggt
     2881 ggggtcgcgc tggttacctg ccttcatgct ttggaatctt tgattccttg tgtccgccca
     2941 ctaccgtctc atactcacag aggcaagact tgctggaacc tggaggtggc ctgggcctcg
     3001 cccccttttt aaaccggaaa gattgtctta cagtacgata cccttttccc aggtcctaaa
     3061 ttatcagacc aggcttgccg gggtgcccac acgtcaccat cagagccact tcctgaggat
     3121 caggggaagg ttctgtggac caaagagagg aagaaggcag ctggagggta ggagtgggaa
     3181 gcatgggcta cctttctgag ggcgaggcgg gcacgttcag gcctgggagg ttaggaatgg
     3241 atggacactc tgagaactgc agccagtgat caggatcagc atcctgggct ttgtctagag
     3301 ccacaaggaa ctagagacag gtgggtctgt ggctccatgg gcaggtgtca tcaaggatca
     3361 aagtgacagc agttggttca ggagccactg ggcatgccaa ctatttccaa cccttcagtc
     3421 tctattgagg gggtcatgag ggttcattta taagaccccc atgttttttt gtggtacttg
     3481 ggattgaatc gagggtctcc tgaatgctag ataaatgctc caccactgag ttagagcccg
     3541 gctctctctg tgggagaaca ggaagaagaa agctggtatg gtaaatcctg ctgctttggg
     3601 ggctggggtt ggggatgagt gacaag
//
