LOCUS       XM_039107252            7235 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus semaphorin 3E (Sema3e), transcript
            variant X2, mRNA.
ACCESSION   XM_039107252
VERSION     XM_039107252.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039107252.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7235
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7235
                     /gene="Sema3e"
                     /note="semaphorin 3E; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 6 ESTs, 2 long SRA reads,
                     1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 14 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:296789"
                     /db_xref="RGD:1310973"
     CDS             657..2618
                     /gene="Sema3e"
                     /codon_start=1
                     /product="semaphorin-3E isoform X2"
                     /protein_id="XP_038963180.1"
                     /db_xref="GeneID:296789"
                     /db_xref="RGD:1310973"
                     /translation="MAPTGHILTLLLWGHLLELWTPGYTANPSYPRLRLSHKELLELN
                     RTSIFQSPFGFLDLHTMLLDEYQERLFVGGRDLVYSLNLERVSDGYREIYWPSTAVKV
                     EECIMKGKDANECANYVRVLHHYNRTHLLTCATGAFDPHCAFIRVGHHSEDPLFHLES
                     HRSERGRGRCPFDPNSSFVSTLVGNELFAGLYSDYWGRDSAIFRSLGKLGHIRTEHDD
                     ERLLKEPKFVGSYMIPDNEDPEDNKMYFFFTEKALEAENNAHTIYTRVGRLCVNDMGG
                     QRILVNKWSTFLKARLVCSVPGMNGIDTHFDELEDVFLLPTRDPKNPVIFGLFNTTSN
                     IFRGHAVCVYHMSSIREAFNGPYAHKEGPEYHWSLYEGKVPYPRPGSCASKVNGGKYG
                     STKDYPDDAIRFARMHPLMYQPIKPVHKKPILVKTDGKYNLRQLAVDRVEAEDGQYDV
                     LFIGTDTGIVLKVITIYNQETEWMEEVILEELQIFKDPAPIISMEISSKRQQLYIGSA
                     SAVAQVRFHHCDMYGSACADCCLARDPYCAWDGISCSRYYPTGAHSKRRFRRQDVRHG
                     NAAQQCFGQQFVGDALDRTEERLAYGIESNSTLLECTPRSLQAKVVWFVQKGRDVRKE
                     ESLDHLSTLPPSSRNAHWNDLKQSKSTSA"
ORIGIN      
        1 ccctaggctg gcgggcgggt cagagcccgg gagatgcggc gaggcacgtg ggctggagac
       61 acttcctaga aacgcgcacg ggctcaaccc tgcctgaact ttcctgtaaa cagagcgctg
      121 acaggcggca tccccactgg gtggatcccg cgctcctggc gcaagtggca cttcttgctt
      181 ttaattatcg agaggagagg cgaatacgaa ctagctgcac ggcaagtcag tgcaggaggc
      241 tgacttctgc gaggcttgcg gggaggctgg gggaagagct gggggaggct gctgctctgc
      301 tccggctgtt ttctcaatga atagctggcg gggagactga agctagccac agcctcctcc
      361 tcactccgcg gctgggtgac ggcgacagct ccagccggga cctggctctc aagacgcgct
      421 ccttggaatg tcctcttgct ctgcgcttct aacccacggg tccccaggac agaaaggctt
      481 tccggatcca aatattggtc ggcaaatggt acttgggaat ggtattttct gatgacaacc
      541 ccttctgttt gtgacaaagc ctgtcgcccg cagttgcccc tgaagagaag tacgaagtaa
      601 aactcagtcc tgccttaaag tgtggctgag ggaccagagg agagtcagca cgcaccatgg
      661 caccgaccgg acacatcctc accttgctgc tctggggtca cctgctggag ctctggaccc
      721 caggttacac tgcgaacccc tcctatccca ggctacgact gtctcataaa gaactcttgg
      781 aactgaacag gacgtcaata tttcaaagcc cctttggttt tcttgatctc cacacaatgc
      841 tgctggatga gtatcaagaa cggctctttg tgggaggcag agaccttgtc tattccctga
      901 acttggaacg cgtcagtgat ggctacagag agatatactg gcctagcaca gcagtaaaag
      961 tagaagaatg cataatgaaa ggaaaagacg caaatgagtg tgccaattat gtccgggttt
     1021 tgcatcacta caacaggaca caccttctga cctgtgctac gggagccttt gatccacact
     1081 gtgcctttat ccgagtcggg caccattcag aggaccccct gtttcacctg gagtcacaca
     1141 gatctgagag aggaaggggc agatgtcctt ttgaccccaa ctcctccttt gtgtccacac
     1201 tagttggtaa tgaactgttt gctgggctct acagtgacta ctggggccga gactcagcga
     1261 tcttccgcag cctggggaag ctcggccata tccgcaccga gcatgacgat gagcggctgc
     1321 tgaaagaacc aaaatttgta ggttcatata tgattcctga taacgaagac ccagaggaca
     1381 acaaaatgta cttcttcttc actgagaagg cattggaggc agagaacaat gcccacacga
     1441 tctacacccg agtggggcgg ctgtgcgtga atgacatggg aggacagaga atcctggtga
     1501 ataagtggag cacattcctc aaagcacggc tggtttgctc agtaccaggg atgaatggaa
     1561 ttgacacaca ctttgacgaa ttagaggatg tgtttttact gcctacccga gatcccaaga
     1621 atccagtgat atttggacta tttaatacta ccagcaatat ttttagaggc catgctgtat
     1681 gtgtgtatca catgtcaagt atccgggaag cctttaatgg cccatatgca cataaagaag
     1741 gccctgaata tcactggtca ctgtatgaag gaaaggtccc ctacccaagg cctggttctt
     1801 gtgccagcaa agtgaatgga ggaaagtacg gatccaccaa agactaccct gacgacgcca
     1861 tccgattcgc aaggatgcat ccactaatgt atcagcccat aaaacctgtc cataaaaaac
     1921 caatactggt aaaaacggat ggaaaatata acctgaggca actagcagtg gaccgagtgg
     1981 aagcggagga tggccagtat gacgttttat ttattggaac agacacagga atcgtgctga
     2041 aagtaatcac aatttacaac caagaaacag agtggatgga ggaagtcatt ctggaggaac
     2101 ttcaaatatt caaggatcca gcccctatca tttctatgga gatttcttca aagaggcaac
     2161 agctctatat tgggtcagcc tctgctgtgg cacaagtcag attccatcac tgtgacatgt
     2221 acggcagcgc ctgtgctgac tgctgcctgg ctcgagaccc ttactgtgcc tgggatggta
     2281 tctcctgctc caggtactac ccgacaggtg cacactcaaa gaggagattc cgcaggcagg
     2341 atgttcggca cggcaacgcc gcccagcagt gctttgggca gcaatttgtg ggagacgctt
     2401 tggataggac tgaagagagg ctggcttatg gcatagagag caacagtact ttgctggaat
     2461 gcaccccacg atcactacaa gcaaaagttg tctggtttgt acagaaggga cgcgacgtaa
     2521 gaaaggaaga gtccctggat cacctctcca cactcccacc ttcttcccga aatgcccatt
     2581 ggaatgatct aaagcagtcc aagtccacat ctgcataata gatagctata caatgtagta
     2641 gacatggatg agctgtaaag gtaacactgt tgtcgtacat gtcttacttc ctttaaaact
     2701 cctcaccacg atgtatacca catccttgat tcaaggatct ctccttcatt ctggtggaaa
     2761 ctgaacatca tacaaatata tattcattgt aacttctgtt gtgttaataa cagtcatttc
     2821 tgcaaacaac actgatagac ccaagcatga atctgtcagc attgttcatt tctgtgacta
     2881 ttgccagtgt gtgtgtatgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgcatgcgc
     2941 gtgtgtgtgc gcacgcgggt gcacggggtg tatgcataca ttgcatggtg tatgatgtgt
     3001 atgtgtcagt gaggtcatgt aggtgatggt cagaacacaa attttaagac tgagttctct
     3061 actccttggg ttacaatgat caagtgtagg ccatcaatct cacatagcaa gaaattttat
     3121 tctacaagcc attttgcaca tcgtggatgt tttaaatatg gtggttactc aaatttcaat
     3181 tcttattcat gatgactttc agtgtcatca tttgttagaa aaaaaaacaa ctttcatttt
     3241 ttcacatttg ttccctgtac catcctagac ttccacaatg gagacaagaa gcagttcact
     3301 ctctagttgg caataatctc tgtcatatat attagagcat aatttaggat aaaaaatttt
     3361 acttttatct taccagatat atttttttct ctaagtcaac cattgtttat atccaatatg
     3421 ggtcagatac gtaaaacaat atattgttgg cctttgtttt ttgacaaaat tgattttgtt
     3481 acttggttat aatgtattct gtgttgatcc aatttaaggt ctatgtctgc ctctttccat
     3541 tgcaagacat ggaaccacgt ggcttgtaca catgggagcc actgctttct tctgaccagc
     3601 tcccagatgt gcacagctcc tgatgcagtt atgtttttat ttgatataat ggcacatcct
     3661 gaatcaatat ttgtagtaaa gaatattaaa accattttta gtaagaaatg ctgtgttcat
     3721 atagattgcc cagaagaata tttgatagaa tgatgtatta ttgtgccatc ttcttgacca
     3781 cagaaatctg gactgcagat agaggacaat cacagctgtg tgaaaacaat gctgtaatca
     3841 agatttgatg atgggtatga ctaagttagc gaaagcagaa gaattaaatc acagaaggaa
     3901 tgcaagtgca aatttctaag tcgtatttat ttttaggtat ccattaaccg cagaaggcac
     3961 attcaacttt taaggctatg taacttacac agtggacact gggaattgta atagcactta
     4021 ttcctggggg gaaaatgtga attctctgta accaagaagg gcaaaaaaaa attacgagaa
     4081 taacatcatt tttgttgtgc aaataaccaa cgtaaaacaa ttcccatggt aactgtcgtg
     4141 tttctctgat atggtctggg ctttatatgc ctacagtgac ttgcttctca aacttcaaca
     4201 tgtagttatg gatgaaatat taccttatga tatcagacat caaacatacc cctaatttca
     4261 ctgaacacag gcttagagct catctatttt tcattaagtg tctgactagg tgcaaggtga
     4321 gtttttcatg tgctattcac tctaacagga gacaggaagg agacagaaga tgatactcac
     4381 tgtaggtgtt tgtaggtgca tgttttttct agtgaagcca atgccctaga ccgtccttac
     4441 ttatgtgtgc tgcaactgtc tttcctgagt catgggctgt taccagaatc atgctgtctt
     4501 ccttgctatt cagatcacta ttagggagtt ctaggaaata tgagtgttag atccattttc
     4561 acggacatac agcacccaag ggcaaattga tacattttgt ttacactgta ttctgagccc
     4621 agcacttgtt gtgtaatgac tcatgaaaaa taagaacacc agttcccttc atgaccttgt
     4681 cacatgatta aagagaggaa cattgttttg aaaagaaaat gacttaaaga atatgttaaa
     4741 tatcttatgc gttacgaaca ccagtgatgg tgagttgtaa aatgacatga aagattctta
     4801 tgagctgtaa gggaggtatt ataaagcaaa tgaaatttaa accgaggcct aaaatgtaaa
     4861 tgagctagca tacactagaa aagatttcac tgaagaaaag aaacacacac acacacacac
     4921 acacacacac acacacacac acacacacaa aaccaccaac cgaagagtac acatggacag
     4981 acccatggct ccatccgcat atgtagcaga ggatggcctt gttgggcatc agtgggagga
     5041 gaggcccttg ggcctctgaa ggctcaatgc tccagtgtag gggaatgcca gggcgggaag
     5101 gtggggggga gtgggtatgt atggggagga cccttataga agcaggaaga tggggactag
     5161 gatgtggtgt ttctggaggg gaaaccagga aaggggataa catttgaaat gtaaattaaa
     5221 aaaataccca aaaagaaaag aaaaaaaaaa caaaacagat gaaagaatgt tgggaatgct
     5281 ttgctcctac gaaatcatct tgctggtgtg tgaactggcc cagtgggtaa acatgcttgt
     5341 tgtcaaggat gaggttgctt atgggaccca cctagtggaa ggagacctct tacaagctgt
     5401 cctctcattt ccacatgcag accatggcac atgtgctctg tgtgtgtgtg cacatgcaca
     5461 cacacaataa tacatacaca catatataca tatatatgaa catatgtatg tacataggct
     5521 agaagagaaa acatggtggc agtaccagga atgaaagcag acagaattag agaaagaaat
     5581 atttgattct ttaagtattc tggatgtccc tgtcacctgc tctcaaagat gtaatgtctg
     5641 cttgaactct gacacatctt aaagggttta ttatatattt agaagaatgg agaaatgaat
     5701 gctttgtatt cttgttgtat tgatctttca atatttgaaa taaaacattc ttatattgtt
     5761 gaaaattttt gcaaacaagg aatttaaaag tctgcatacc cttaaaatta tttagtatga
     5821 tgattttttt catggaaatg attgtctcca taagataata tggaacaata actataatgt
     5881 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtaaaa ctttcttcct actgcactgt
     5941 atgtcatgta atttcatatt ccaacactta tttcaaatgc ttcctttttc tacattgtac
     6001 tacataggga tgctgtttgg gctcatttga ttgggacata ccatcggtgt gatgaaccca
     6061 tctttgcttt tcttacatct gggaaacact taagttttga aaatggttca cattttatgg
     6121 taaacacaaa tattaatacc gtgctccatc ttccatatga taagaaatac agtttttaag
     6181 taagtattgg ccttgggata acaaacacag tgacttaaaa catactcgtg ggaaagtcgc
     6241 taacctcaga aatgatcact ttggctccct gctgtgggaa acagcttgtc atgctggtca
     6301 cctgagcgac tcacatcttc atggacaagc aaatgctctg aagaagcgta ggtccttatt
     6361 agtttgttaa agaaaagatg aaggatgcca gggaaaacct ctgtgataca tgtatgtgca
     6421 acattgcatg tgcacatgta gagaggaggt gaggaggtac aaagatcgaa aggaaggaga
     6481 aatgtcatgt gactggacga ggatatatgc agtatatagc catttctcag ggctacatca
     6541 tgccattcat cagcagacat cgaaaatcct cccagtcagt gaagagagca gagttcctcc
     6601 aacactgcta aggaggatct gatggaaaga atggacagaa ggaaggttcg ggaagtctgc
     6661 tgtgagacca aatgagacag agcagtgtgg agtctaacac tggcataaaa accaatgagg
     6721 acaaagcatc tttttctggt caccactgaa gaaatgttca tatggatttg ttacaagttg
     6781 tctatgagga tagacacata gataggagat agatagatag atagatagat agacagatag
     6841 aaggcagaga gataaatata agtattcatt gatagagttt gcgagtcctg gaatgattat
     6901 ataattttta gaattgggaa gtggcaaacg gaaggggtag tttcagtgga agattagtat
     6961 atcatagttg ctaaagaccg gtataaatct tagtattatt taaattaaca taaaggcagt
     7021 ggactgtctg tataatgtgt gacattttag ggaaactggt tgaaacaaag aaatagaaag
     7081 gtcacaatac atggaattta tttttggaag actaggaaat ctgatgataa aacaaagaac
     7141 taaggaaaag aatcattcat tggggttggg gatttagctc agtggtagag cgcttgccta
     7201 gcaagcgcaa ggccctgggt tcggtcccca gctcc
//
