LOCUS       NM_001079942            2542 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus semaphorin 3B (Sema3b), mRNA.
ACCESSION   NM_001079942 XM_001074382 XM_343479
VERSION     NM_001079942.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2542)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC129103.1.
            
            [WARNING] On Oct 10, 2024 this sequence was replaced by
            NM_001079942.2.
            
            On or before Jan 11, 2007 this sequence version replaced
            XM_343479.3, XM_001074382.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC129103.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2542
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..2542
                     /gene="Sema3b"
                     /note="semaphorin 3B"
                     /db_xref="GeneID:363142"
                     /db_xref="RGD:1310079"
     exon            1..47
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
     exon            48..232
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
     CDS             124..2373
                     /gene="Sema3b"
                     /note="sema domain, immunoglobulin domain (Ig), short
                     basic domain, secreted, (semaphorin) 3B"
                     /codon_start=1
                     /product="semaphorin-3B precursor"
                     /protein_id="NP_001073411.1"
                     /db_xref="GeneID:363142"
                     /db_xref="RGD:1310079"
                     /translation="MGRAEAAAMIPGLALLWVAGLGDAAPNLPRLRLSFQELQAQHGI
                     RTFRLERTCCYEALLVDEERGRLFVGAENHVASLSLDNISKRAKKLAWPAPVEWREEC
                     NWAGKDIGTECMNFVKLLHAYNHTHLLACGTGAFHPTCAFVEVGHRLEEPMLRLDLRK
                     LEDGKGKSPYDPRHRAASVLVGEELYSGVAADLMGRDFTIFRSLGQNPSLRTEPHDSR
                     WLNEPKFVKVFWIPESENPDDDKIYFFFRESAVEAAPAMGRMTVSRVGQICRNDLGGQ
                     RSLVNKWTTFLKARLVCSVPGVEGDTHFDQLQDVFLLSSRDRQTPFLYAVFSTSSGIF
                     QGSAVCVYSMNDVRRAFLGPFAHKEGPTHQWVSYQGRVPYPRPGMCPSKTFGTFSSTK
                     DFPDDVIQFARNHPLMYNSVLPMGGRPLFLQVGAGYTFTQIAADRVAAADGHYDVLFI
                     GTDVGTVLKVISVPKGSRPNSEGLLLEELQVFEDSAAITSMQISSKRHQLYIASPSAV
                     AQIALHRCPALGRACAECCLARDPYCAWDGSACTRFQPTAKRRFRRQDIRNGNPSTLC
                     SGDPSHSVLLERKVLGVERGSAFLECEPRSLQAHVEWTFHRAGEAAHTQVLAEERVER
                     TARGLLLRGLRRQDSGVYLCVAVEQGFSQPLRRLVLHVLSAAQAERLARAEEAAVPAP
                     PGPKLWYRDFLQLVEPGGGGGANSLRMCRPQPGPHSVAADSRRKGRNRRMHVSELRAE
                     RGPRSAAHW"
     exon            233..390
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
     exon            391..453
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
     exon            454..573
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
     exon            574..667
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
     exon            668..787
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
     exon            788..933
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
     exon            934..1045
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1046..1115
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1116..1260
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1261..1480
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1481..1572
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1573..1614
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1615..1772
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1773..1828
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1829..1968
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1969..2513
                     /gene="Sema3b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtctctgatt gtggccaggc ggggcaccct tggtggagag gaaaacgatc ccggggcaga
       61 gtccagggct gccgaaggct cctccacacg cctgctgaac cctgagcgcc ctgtgctgcc
      121 ggcatggggc gggctgaggc cgccgccatg atcccaggcc tggcccttct ctgggtagca
      181 gggctggggg atgctgcccc taaccttccc cgccttcggc tctcctttca agaactacag
      241 gcccagcatg gcatccgaac cttcaggctg gagcggacct gctgttatga agccttgctg
      301 gtggatgagg agcgggggcg cctgtttgtg ggtgctgaga accacgtggc ttccctcagc
      361 ctggacaaca tcagcaagcg agccaagaag ctggcctggc ccgcccctgt ggaatggcgt
      421 gaagaatgca actgggcagg gaaggacatt ggtacggagt gcatgaactt cgtgaagctg
      481 ttgcatgcct acaaccacac ccacctgctg gcctgcggca caggggcctt ccaccccacc
      541 tgtgcatttg tggaggtggg ccaccggctg gaggaaccca tgctccgcct ggacctgagg
      601 aagctcgagg atggcaaggg aaagagtcca tatgacccaa ggcaccgggc tgcctcggtg
      661 ctggtggggg aagagctgta ttccggggtg gcggcggacc ttatgggccg ggactttacc
      721 atctttcgaa gcttgggtca gaatccgagt ctccgaacag agccccatga ttcccgctgg
      781 ctcaatgaac ccaagtttgt caaggtcttt tggatcccag agagcgagaa ccctgatgac
      841 gataaaatct atttcttctt ccgtgagtcc gcagtggaag cggcaccagc aatggggcgc
      901 atgactgtgt ctcgtgttgg tcagatctgc cggaatgacc tgggtggcca gcggagcttg
      961 gtcaacaagt ggaccacatt tctgaaggcg cggcttgtat gctcagtacc tggagttgag
     1021 ggtgacaccc actttgacca acttcaggat gttttccttt tgtcctcccg agaccgccag
     1081 acaccttttc tctatgctgt cttctccacc tccagtggca tcttccaggg ctctgctgtg
     1141 tgcgtgtaca gcatgaacga cgtgcgccga gccttcttgg gaccttttgc tcacaaagag
     1201 gggcctacac atcagtgggt gtcctaccag ggtcgggtac cctacccaag acctggcatg
     1261 tgccccagca agacctttgg caccttcagc tccaccaagg acttcccaga tgatgttatc
     1321 cagtttgctc ggaaccaccc cctcatgtac aactcagtcc tgcccatggg ggggcgccct
     1381 ctcttcctac aagtgggagc tgggtacacc ttcacccaga tcgctgcaga ccgggtagca
     1441 gcagccgatg gacactacga tgtgctcttc atcggcacag atgtgggcac ggtgctgaaa
     1501 gtcatctcag tccccaaggg cagccgacct aactcggaag gacttctcct ggaagagctg
     1561 caggtgtttg aggactctgc tgctatcacc agcatgcaaa tctcctcgaa aaggcaccag
     1621 ctctacatag catcacccag cgcagtggcc cagattgctt tacatcgctg ccctgcccta
     1681 ggccgcgcct gcgcagaatg ctgcttggcc cgtgacccct actgcgcctg ggatggatca
     1741 gcctgcacac gcttccagcc tactgccaag aggcggttcc ggaggcaaga cataaggaat
     1801 ggcaacccca gcaccctgtg ctctggggac ccctctcact ctgtgctgct ggagaggaag
     1861 gtcttaggtg tggagagggg cagcgcgttt ctggagtgtg agccccgctc gctccaggcg
     1921 catgtggaat ggaccttcca tcgtgcaggg gaggcagctc acacccaggt gctggctgag
     1981 gagcgggtag agcgcactgc acgggggctg ctgttgcggg ggctgcggcg ccaggactct
     2041 ggcgtgtatc tgtgcgtcgc ggttgaacaa ggcttttcac aaccactgcg tcgcctggtg
     2101 ctgcacgtgc tgagtgcggc acaggctgaa cgactggcga gggcagagga ggcagcagtt
     2161 cccgcaccac caggtcctaa actctggtac cgggacttcc tgcagctggt ggagccaggc
     2221 ggtggtggag gtgcaaactc cctgcgaatg tgccgcccgc agcccgggcc ccactctgtg
     2281 gcagcagatt cacgtcgtaa gggtcgcaac aggcggatgc atgtctctga gctgcgtgct
     2341 gaacgtggac cacgtagcgc agctcactgg tgactcggct gtccccatac tggggaccag
     2401 gctggatatg acacaccgaa gagggggcag atagatgcca ggaagacaga tgagttgtgg
     2461 ctggggcaca ctgagatcgt tgggccaacg gagacaacta acccatacat gaaaaaaaaa
     2521 aaaaaaaaaa aaaaaaaaaa aa
//
