LOCUS       XM_006250150            3314 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus selectin P (Selp), transcript variant
            X1, mRNA.
ACCESSION   XM_006250150
VERSION     XM_006250150.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006250150.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006250150.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3314
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3314
                     /gene="Selp"
                     /gene_synonym="PSELECT"
                     /note="selectin P; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 6 ESTs, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 61 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:25651"
                     /db_xref="RGD:3656"
     CDS             147..2450
                     /gene="Selp"
                     /gene_synonym="PSELECT"
                     /codon_start=1
                     /product="P-selectin isoform X1"
                     /protein_id="XP_006250212.1"
                     /db_xref="GeneID:25651"
                     /db_xref="RGD:3656"
                     /translation="MAGCPKGSWKPRLRSVVLGAAQLVWLSALISELVNQKEVAAWTY
                     NYSTKAYSWNNSRAFCKRHFTDLVAIQNKNEIAHLNDVIPYVNSYYWIGIRKINNKWT
                     WVGTNKTLTAEAENWADNEPNNKRNNQDCVEIYIKSNSAPGKWNDEPCFKRKRALCYT
                     ASCQDMSCNSQGECIETIGSYTCSCYPGFYGPECEYVQECGKFDIPQHVLMNCSHPLG
                     DFSFSSQCTFSCPEGYDLNGPSEMQCLASGIWTNNPPQCKAVQCQSLEAPLHGTMDCT
                     HPLAAFAYDSSCKFECQPGYRMRGSDILHCTDSGQWSEPLPTCEAIACEPLESPLHGS
                     MDCFPSTGAFGYNSSCTFRCTEGFVLMGNDAIHCADLGQWTAPAPVCEALQCQEFPVP
                     SKAQVSCSDPFGTLKYQSACSFSCDEGSLLVGASVIRCLATGHWSEAPPECQAVSCTP
                     LLSPENGTMTCIQPLGHSNYKSTCQFMCDEGFYLSGPERLDCSPSGHWTGSPPMCEAI
                     KCPEIFAPEQGSLDCSHVHGEFSVGSTCHFSCNEEFELLGSRNVECTVSGRWSAPPPT
                     CKGVTSLPVPSVRCPALTTPGQGTMSCRHHLESFGPNTTCYFGCKTGFTLRGANSLRC
                     GASGQWTAVTPVCRAVKCSELHMDTAVAMNCSNPWGNFSYGSTCAFHCPEGQSLNGSA
                     RTTCREDGHWSDAMPTCQGTLTIQEALTYLGGALASTTGLAVGGTLLALLRKRLRKKD
                     DGKCPLNPHSHLGTYGVFTNAAYDPTP"
ORIGIN      
        1 taacatcagg ggaaaggccg tgataaattt ctggaaagcg aataggaagt tgttttgcaa
       61 ggcagcctga caccaagggg aggcagcaaa agtataagaa gtgtggcttg gccagaggga
      121 agaaagccag acgggtcgga gaggacatgg ccggctgccc aaaaggttct tggaagccaa
      181 gactccggag tgtggtcctg ggagccgctc agcttgtctg gctcagtgct ttgatctctg
      241 agcttgtaaa tcagaaggaa gtggccgcgt ggacctataa ctacagcacg aaagcatact
      301 catggaataa ctcacgggca ttctgcaaga ggcacttcac agacttagtg gccatccaga
      361 acaagaatga aatcgctcac ctcaatgacg tcatcccata cgtcaactct tactactgga
      421 ttggtatccg aaagatcaac aataagtgga cctgggtggg aaccaataag actctcacgg
      481 cggaggctga gaactgggca gacaacgagc ccaacaacaa gaggaacaac caggactgtg
      541 tggagatcta catcaagagt aattcggccc ctggcaagtg gaatgatgag ccctgcttta
      601 aacgaaagcg ggccctgtgc tacacagcct cctgccagga catgtcttgc aacagccaag
      661 gggagtgcat cgagaccatt gggagctaca cctgctcctg ctacccgggc ttctatgggc
      721 cagagtgtga atacgtccaa gagtgtggaa aattcgacat cccgcaacac gttctcatga
      781 actgcagcca ccctctgggg gacttctcct tcagctcaca gtgcaccttc agctgtcctg
      841 agggctatga cctgaacgga cccagtgaga tgcaatgttt ggcctctgga atctggacaa
      901 ataatccccc gcagtgtaaa gctgtgcagt gccagagcct ggaagcccct ctccatggaa
      961 ccatggactg tacacaccca ttggctgcct ttgcctatga ctccagctgt aaatttgagt
     1021 gccagcctgg atatcggatg aggggctctg acatactcca ctgcactgac tctggtcagt
     1081 ggagtgaacc attgccaacc tgtgaagcca ttgcatgcga accgctggag agccccctcc
     1141 atgggagcat ggactgcttc ccatccacag gagcattcgg gtacaacagc agctgcactt
     1201 ttcgctgcac agagggattc gtgctgatgg gaaatgatgc cattcattgt gctgacttgg
     1261 ggcagtggac agccccagcc ccagtctgtg aagcgttgca atgtcaggag tttccggtcc
     1321 caagtaaagc ccaggtgagc tgctcggacc ccttcgggac cttgaagtac cagtcagcct
     1381 gcagcttttc ctgtgatgaa ggctcactct tggtgggagc aagtgtgata agatgcttgg
     1441 ctactggaca ctggagtgag gcccctcctg aatgtcaagc tgtctcctgc acccctttgc
     1501 tcagccctga gaatggaacc atgacgtgta tccagcctct tgggcattcc aactacaaat
     1561 ccacatgcca gttcatgtgt gacgaaggat tttatctatc tggaccagaa agattggact
     1621 gttctccatc tggacactgg acaggcagcc ctccaatgtg tgaagccatc aagtgcccag
     1681 aaatctttgc cccagaacaa ggcagcttgg actgctctca tgttcatgga gaattcagtg
     1741 tcggctccac ctgtcacttc tcctgcaacg aggagtttga gctcctggga tctcgaaatg
     1801 tggagtgcac agtgtctgga agatggtcag cgcctccacc aacctgcaaa ggtgtaacat
     1861 cacttcctgt cccatcggtt cgatgccccg ccctcactac tcctggacag ggcacaatgt
     1921 cctgtcgaca ccacctggaa agctttggtc cgaacaccac ttgttacttt gggtgcaaaa
     1981 ctggatttac actcagagga gccaactctc tccgctgcgg ggcttcagga caatggacag
     2041 cagtgacgcc cgtgtgcaga gccgtcaaat gctcagaatt gcacatggac acagcagtcg
     2101 cgatgaactg ttccaacccc tggggaaact ttagctacgg atcaacctgt gccttccact
     2161 gtccagaggg gcagtcactg aatggctctg ccaggacaac ctgccgagag gacggtcact
     2221 ggtcagatgc catgccaacc tgccaaggga cgctgacgat ccaggaagct ctgacttact
     2281 tgggtggcgc cttggcttct acaacaggcc tggcagtggg cgggacgcta ctggctctgc
     2341 taagaaagcg tctcagaaag aaagatgatg gaaaatgccc cctgaaccct cacagccacc
     2401 taggaacata tggagtcttc acgaacgctg catatgaccc aaccccttaa gaggcctggc
     2461 ctcccgatgt caattggatc tctcaggatt ccgcatgcag ataacaagtt tcctggtcga
     2521 cttgactgtc actccccagc atttgctgcg gttctttgtg gtaaataatt ggacaggaac
     2581 caaacgaaag gacgatgtgc tccgcccacc ccttcctgct ccgcccctca ccttcctcgg
     2641 gctcagccac agaaacagga gcaaatgttt ctgctgtggt ctgtggcttg atgttacttt
     2701 gctgttactg aaaacccgag ttagtccaag gcactggagc atctgcctca ccaggtgacc
     2761 aggctgtgga aaaccggaag tctgtctgct ttctcttggg attgaagaat ggcgatgttg
     2821 gtgggcaggc agacctctcg tttaagggaa cgcctgcttt aagatctcct gggtcttccg
     2881 tgtttcttat ctctgaggtt gtttacacct ctgctgctga gactttcaga tggtactagg
     2941 ggacacagaa gatcgggaac agagcatgga caccacatct gactgcagac tttccgtcca
     3001 ccaaagcacc caaaggccat tgtttgactg tagagttcaa ctcccccagc tatcaagctc
     3061 ttcacgtttt gttcagtgag gtctgtgtat ctcactttgt ctaccaccaa tgtggtcaca
     3121 gttacactcc tccaaatgac agctggaccc tccagtgagc ccacaaatat atgttgtatg
     3181 tcgcctgtcc acagagagaa aaatcagagg agcaggaaag gtcctctttt cgttattttg
     3241 ttctgcagga aagaacagtt atgttttata cgtaacttaa ttcacatatt taataaataa
     3301 gtcactgaaa atta
//
