LOCUS       XM_039111288            3520 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus selenoprotein N (Selenon), transcript
            variant X1, mRNA.
ACCESSION   XM_039111288
VERSION     XM_039111288.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 1, 2024 this sequence was replaced by
            NM_001427657.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3520
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3520
                     /gene="Selenon"
                     /note="selenoprotein N; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 52 ESTs, 8 long SRA
                     reads, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 235
                     samples with support for all annotated introns"
                     /db_xref="GeneID:362624"
                     /db_xref="RGD:1304574"
     CDS             60..1733
                     /gene="Selenon"
                     /codon_start=1
                     /transl_except=(pos:1341..1343,aa:Sec)
                     /product="selenoprotein N isoform X1"
                     /protein_id="XP_038967216.1"
                     /db_xref="GeneID:362624"
                     /db_xref="RGD:1304574"
                     /translation="MARALPDERRPHSPDPGAQPAPPRRRARALALLGALLAAIAAVA
                     AARACALLADAQAAARQESALKVLGTDGLFLFSSLDTDQDSYISPEEFKPIAEKLTGS
                     VPVASYEEEELPHDPSEETLTIEARFQPLLTETMTKSKDGFLGVSRLALSGLRNWTTA
                     ASPNAVFAARHFRPFLPPPGQELGQPWWIIPGELSVFTGYLSNNRFYPPPPKGKEVII
                     HRLLGMFHPRPFVKTRFAPQGTVACLTAVSDSYYTVMFRIHAEFQLSEPPDFPFWFSP
                     GQFTGHIILSKDATHIRDFRLFVPNHRSLNVDMEWLYGASETSNMEVDIGYIPQMELE
                     AVGPSVPSVILDEDGNMIDSRLPSGEPLQFVFEEIKWHQELSWEEAARRLEVAMYPFK
                     KVNYLPFTEAFDRAKAENKLVHSILLWGALDDQSCUGSGRTLRETVLESPPILTLLNE
                     SFISTWSLVKELEDLQTQQGSPLHRQLAGLHLEKYSFPVEMLICLPNGTVVHHINANY
                     FLDITSMKPEDMENTNVFSFSSTFEDPSTATYMQFLREGLRRGLPLLQP"
ORIGIN      
        1 ccgccccgcg ccgcgcgatc cccgttcccg cagccgccgg gagcccggga gccgccgcca
       61 tggcccgggc cctcccggac gagcgccgcc cgcacagccc ggaccccggc gcgcagcccg
      121 cgcctccccg ccgccgagcc cgagccttgg cgctgctcgg agccctgctg gccgctatcg
      181 ccgccgtcgc cgctgcccgg gcctgcgcgc tcctcgccga cgcccaggcg gccgcgcggc
      241 aggaatcggc actgaaggtc ctggggacag atggcctctt tctcttttcc tcgctggaca
      301 ctgaccagga ttcgtacatc agtccggagg aattcaaacc catcgcggag aaactgacag
      361 ggtcagttcc tgtggccagc tatgaggagg aggagctgcc ccatgacccc agcgaggaga
      421 ctcttaccat agaagcccgg ttccagcctc tactcacgga gaccatgacc aagagcaaag
      481 acggcttcct aggggtctcc cgcctcgctc tgtcaggcct ccgcaactgg acgacagcag
      541 cctcgccaaa tgcagtgttc gccgcccgcc acttccggcc cttcctgccc cctccaggtc
      601 aggagctggg ccagccttgg tggatcatcc ctggggagct gagcgtcttc acgggctatt
      661 tgtccaacaa ccgattctac ccaccgccgc ccaagggcaa ggaggtcatc atccaccgcc
      721 tgctcggcat gttccaccct cgccccttcg tgaagacccg ctttgcccct cagggcactg
      781 tggcctgcct gactgccgtc agcgattcct actataccgt gatgttccgg atccatgccg
      841 agttccagct cagcgagcct cctgacttcc ccttctggtt ctcacctggc cagttcaccg
      901 gccatatcat cttatccaaa gatgctacac acatccgtga cttccgactg ttcgtgccca
      961 accacaggtc tctgaatgtg gacatggagt ggctgtacgg ggccagtgag accagcaaca
     1021 tggaggtgga cattggctac atcccccaga tggagctgga ggctgtgggc ccctcggtgc
     1081 cctctgtgat cttggacgag gacggcaaca tgattgacag ccgcctgccc tcgggagaac
     1141 ccctccagtt tgtgtttgag gagatcaagt ggcatcagga gctgagctgg gaagaagctg
     1201 ctcggcgcct agaggtggcc atgtacccct tcaagaaggt caactacctg ccgttcacgg
     1261 aggcctttga cagagccaag gccgagaaca aactcgtcca ttccatcttg ctgtgggggg
     1321 ccctggacga ccagtcctgc tgaggttccg ggcggactct ccgggagact gtcctggaaa
     1381 gcccgcccat actcactctc ctcaacgaga gcttcatcag tacctggtcc ctggtgaagg
     1441 agctggagga cctgcagacc cagcagggga gccccctcca caggcagctg gcaggcctgc
     1501 acttggagaa gtacagcttt cctgtggaga tgctgatctg cctgcccaac ggcacagtgg
     1561 tccaccacat caacgccaac tacttcctgg acatcacctc catgaagcct gaagacatgg
     1621 agaatactaa tgtcttcagc ttctcgtcga cctttgagga cccgtccaca gcgacctaca
     1681 tgcagttcct gagagaaggg ctccggcgtg gcctgcccct cctccagccc tagtgtgcct
     1741 cgagccccag agacctggat ctggtgaaag acatggcaga cagaatccac gtgccctgga
     1801 gccacagtgt ctggagtcca tttcagaccg gaaagggtcc ccatctcatc cccaggttgc
     1861 ctagagaggt ccaaggtcaa ctgaggctac tttcatgtag cctgaatgat ggtggctaga
     1921 tgaggggacc tgcccgcctg gtcatgtgac tgagcttaag cctgctacca ctagcagctc
     1981 atctggttcc aagagcttct tcgagtcccc cgaaaaggag tctggggaga tctccccgga
     2041 ccttccacac agtgatatag tttaggactt tgttgtgaat aaggagtggg ctggaaagat
     2101 ggacggtccc ttctttctag gctccccttt ccagccaaag gaatcaaaga gcttggccca
     2161 gggaccaggc tgtcagccct atgccggctt ggaaccttct atgctggcca tcccctatgc
     2221 agcgttccgt gcacagtgcc cccagctggg gtcactgtca gctggagaca gctgtctgga
     2281 gcctgtgcac agagcccttc tacagaagtg gagaccatat tgtcacactg ttacccctca
     2341 cccattgacc tgatgaccga gcccagccct gttcggggag ttggagaagt tcactgtgaa
     2401 gtagggttgc agtaggttcc tgccacctga cccctattcc atagaggtgt atcccagcca
     2461 aagaacgcag ccttccttat agccagcact gtctaggccc ccagggtact gttggtcaac
     2521 tcactcatca ctggatggcc accagtttcc actggctact tctggggatg tggtggacat
     2581 cttgaattgc tgaccacggc cagtcttttt tatgcataca gaaaagtgtt tttgtaagaa
     2641 ctttctcaca gtttctagat attttttaaa aatctgaacg ctgaggagaa ggaagggggt
     2701 ggtgttttcc cccagcagca gccgcatgat ggctgggtct gaaatcccaa aaggatccag
     2761 cctgatgtcc tcgcagttgc acatgtgggg aaaaacaagc ccatctccct tctcttccac
     2821 ctttttacaa acagtcaagg ctcagtattc ctcagctctg tcctgggctc cacactccca
     2881 agatttgcct tgaactcagc cgcatggaaa cctgacatca gcccggtccc tgtgtgccat
     2941 ttctttccct ggcctcaccc ggggctcagg cttcaaccat gcagaggagg aaggcaggta
     3001 gactttccct gagtcctact cccccgcctg gccctggggt tgccacatag agccctcctc
     3061 acactctctg gctcccaaga gccttgtctc tgggatgccc tgtgaagatc acatacattt
     3121 tctcataaca aaccatgaac tggaaaattg gccccacttt cagaggatga cattggagtc
     3181 ttagagaagt gactcccagg gtcactcaga ggacgagagt tgtgatccaa acctgcatga
     3241 ctctaaaggt gatgtctcgg gtttgggggt gccctggctc atttacccct gtagtgggaa
     3301 gggaatcctt tcaaatcatc atgtcttctg atctgactaa actgagcggg tgacagcact
     3361 gccaggttct ctgagcagtc ctgtggagag cattgattgc tggggctttg agtcttcatc
     3421 agataacgct gcacatcccc agctgccacc ttgccacccc tctgcctttc ttcctccatc
     3481 cctcagcatg ccctgtaata aaattggaga gcctgaggta
//
