LOCUS       XM_341223               4188 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SEL1L family member 3 (Sel1l3),
            transcript variant X1, mRNA.
ACCESSION   XM_341223
VERSION     XM_341223.9
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 18, 2024 this sequence was replaced by
            NM_001427327.1.
            
            On Jan 21, 2021 this sequence version replaced XM_341223.8.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4188
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4188
                     /gene="Sel1l3"
                     /note="SEL1L family member 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 12
                     ESTs, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 52 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:360945"
                     /db_xref="RGD:1562860"
     CDS             144..3554
                     /gene="Sel1l3"
                     /codon_start=1
                     /product="protein sel-1 homolog 3 isoform X1"
                     /protein_id="XP_341224.5"
                     /db_xref="GeneID:360945"
                     /db_xref="RGD:1562860"
                     /translation="MQWRGAGLWWPRRRQQQQQQPPPPAFGPRAAAMVPPSGGVPLSL
                     GGRPASALLFLCYLNFVPSLGRQTSLTTSVLPRTEQSTTYTDFIYFTAFEGSVRNVSE
                     VSVEYLCSQPCVVNLEAVVSSEFRSSIPVYKKRWRNEKHLHTSRTQIVHVKFPSIMVY
                     RDDYLIRHPISVSPVILRAWITHWHSGGGLNVRGEENLLHAVAKNYTLLQTVPPFERP
                     FKDHQVCLEWNMDYLWSLWANRIPQCPLESDAVPLLSFPYASSGENTGIVKKLPKFQN
                     RELEATRSQRVDYPMVTISLWLYLLHYCEASLCGILYFVDSNEMYGTPSVFLTEDGSL
                     HIQMHLIKGEDLAVKTKFTLPLKEWCRLDISFNGGQIVVTASIGWDLKSYHNQTISFH
                     EDFYYNDTAGYFVVGGSRYVAGIEGFFGPVKYYRLRSLHPAQVLNPFLEKELAEQIKL
                     YYEHCAEVWDIISSYTATVQAGGERRETCDFRNSYLDLKRKYGRAEVCRALPWEKGLR
                     DRHPSLFQTLLQMDLLTAPRNQNDSVLEIGARIFEKAVKRLSGVDGLHQISSAVPLLM
                     YSSCCGYHKASYYLTVFYETGLNGPRDQLQGMLYSLVGGQGSERLSSMNLGYKHYQGV
                     DSYPLDWELSYAYYSNIATKTPLDQHTLQGDQAYVETIRLKDDEILKVQTKEDGDVFM
                     WLKHEATRGNAAAQQRLAQMLFWGQQGVAKNPEAAIEWYAKGALETEDPALIYDYAIV
                     LFKGQGVKKNRRLALELMKKAASKGLHQAVNGLGWYYHKFRKNYAKAAKYWLKAEEMG
                     NPDASYNLGVLYLDGIFPGLPGRNLTLAGEYFHKAAQGGHIEGTLWCSLYYITGNLET
                     FPRDPEKAVVWAKHVAEKNGYLGHVIRKGLNAYLEGLWHEALLYYVLAAETGIEVSQT
                     NLAHICEERPDLAGRYLGVNCVWRYYNFSVFQIDAPSFAYLKMGDLYYYGHQNQSQDL
                     ELSVQMYAQAALDGDSQGFFNLAALIEEGAVIPHHILEFLEIDPSLHPSNTSILRELY
                     ERCWSLGNEESLSPCSLALLYLHLRLLCGALMHSTLIYFLGTFLLSVVIAWMVLYLQC
                     VSASGSSPAPAWVLADPASSTPSPAVPPAADASDHDPPMMANNPEPRG"
ORIGIN      
        1 cggcggcggg tccggtggca gcggcaggtg gccgggcgcg cggcgggccg ccggccgggg
       61 gcgggaagga aggtggcgcc tcgggcgggg gccggtccct gcaccaggtg acctgttccg
      121 gccgggatcc gggcggcctc gccatgcagt ggcgcggcgc ggggctttgg tggccacggc
      181 ggcgacagca gcagcagcag cagccgccgc cgccggcttt cggtccccgg gccgcagcca
      241 tggtcccccc gagcggcggt gtccccctga gcctcggcgg ccgccctgcc agcgcgctgc
      301 tctttctctg ctacctgaat tttgtgccat ctttgggcag gcagacttcc ctgacgacat
      361 cggtgctgcc cagaacagaa cagagcacaa cgtacacaga ctttatttat tttactgcct
      421 ttgaagggag cgtgcgcaat gtctctgaag tctctgtgga gtatttatgc tcccagcctt
      481 gtgttgtcaa tttggaagcg gttgtgtcat ccgagttcag aagtagcatt cccgtgtaca
      541 aaaagaggtg gaggaatgag aagcatcttc acaccagcag gacacagata gtacacgtga
      601 agtttccgag cattatggtg tacagggatg actacctgat cagacacccc atctcggtgt
      661 ccccagtgat tctccgagcc tggatcactc actggcacag tggcgggggc ttgaacgtgc
      721 gaggggagga gaatttgctg cacgcagtag ccaagaatta caccctgctg cagacggtcc
      781 cgcctttcga acggcctttc aaagatcatc aggtgtgcct ggagtggaac atggactatc
      841 tctggagtct ctgggccaat aggatcccac agtgtcctct ggaaagtgat gcagttcccc
      901 tcctcagctt tccctatgct tccagtggag aaaacacagg catcgtaaag aagctcccaa
      961 agttccagaa ccgagaacta gaggccaccc gaagccagcg cgtggactac cccatggtca
     1021 ccatttcact gtggctttat ttactccatt attgcgaggc cagcctctgt ggaattctgt
     1081 actttgttga ttctaatgag atgtacggca cgccttctgt ttttcttacg gaagacggca
     1141 gtttgcatat tcaaatgcat ctcatcaaag gagaagacct ggctgtaaaa acaaaattca
     1201 ccctcccttt gaaggagtgg tgccgactgg acatctcttt caatggaggc cagatagtgg
     1261 tcactgccag cattggatgg gacttgaaaa gctaccataa tcagaccatt agcttccatg
     1321 aagatttcta ttacaatgac acagctggat acttcgttgt tggagggagc aggtatgtgg
     1381 caggcatcga agggtttttt ggaccagtga aatactatcg cctccgcagc ctacaccccg
     1441 cacaggttct taatcccttc cttgagaagg aactggctga acaaatcaag ttatattatg
     1501 agcattgcgc cgaggtctgg gacataatat cctcgtatac tgcaacagtc caggctgggg
     1561 gtgagaggcg agagacatgt gacttccgta actcctacct ggacctcaag cgcaagtatg
     1621 ggagagccga ggtgtgcaga gccttaccct gggagaaggg gctgagagac aggcacccca
     1681 gcttgttcca gactctgctg cagatggacc tgctgaccgc gccacggaac caaaatgact
     1741 ccgtattaga aatcggtgcg aggatatttg agaaggctgt aaagagactc tctggcgttg
     1801 atggccttca ccaaattagc tctgccgtcc cccttctgat gtattccagc tgctgtggat
     1861 accataaagc atcctactac ctcaccgtct tctatgaaac tgggttaaat ggacctcggg
     1921 atcagctgca gggcatgcta tacagtctgg ttggaggcca aggcagtgag aggctgtcat
     1981 caatgaatct cgggtacaag cactaccagg gtgttgacag ctaccccctg gactgggaac
     2041 tgtcatatgc ctactacagc aacattgcta caaagacacc ccttgaccag cacacactgc
     2101 agggagacca ggcgtatgtt gaaactatta gactcaaaga tgatgaaata ctcaaggtcc
     2161 aaaccaaaga agacggagat gtctttatgt ggctgaagca cgaagccacc cgcggcaacg
     2221 cggcagcaca gcaacgattg gctcagatgc tcttctgggg acagcaaggg gtggccaaga
     2281 accctgaggc tgctatcgag tggtacgcta agggggccct ggagactgag gatccggcgc
     2341 tgatatacga ctatgccatt gtgttattca agggtcaagg agttaaaaag aacagacggc
     2401 ttgccttaga gctcatgaag aaagctgctt ccaagggatt gcatcaggct gtcaatggcc
     2461 tgggatggta ttaccacaaa ttcaggaaaa attatgccaa agcagcaaag tactggttaa
     2521 aagctgaaga aatgggaaac ccagatgcat cttacaatct tggggtccta tatttggacg
     2581 gcattttccc aggacttcct gggaggaatc tgacactagc tggcgaatac ttccataaag
     2641 ctgcacaagg tgggcacatc gaagggacat tgtggtgttc tctttactat atcaccggaa
     2701 acctggagac cttccctaga gatccggaga aagctgttgt atgggcaaaa catgtggctg
     2761 agaaaaacgg atacttggga catgtcattc gcaaaggcct caatgcctac ctggagggtc
     2821 tgtggcacga ggctttgctg tattatgttt tagcagcaga aactggaatt gaagtgtcac
     2881 agacaaattt agcacacatc tgcgaggagc ggccagacct ggctgggaga tacttgggcg
     2941 ttaattgtgt ttggcgatac tataatttct ctgtttttca aatcgatgct ccttcatttg
     3001 catatttgaa aatgggagac ctttactact atggccacca aaaccagtcc caagatctgg
     3061 agctgtctgt gcagatgtac gcccaagcag ccctggatgg agactcccag ggatttttca
     3121 accttgctgc actgatagag gaaggtgctg tcatcccaca ccacattctg gagttcttgg
     3181 aaatcgaccc atcactccat cccagtaaca cctccatact ccgggagctg tacgaaaggt
     3241 gctggagtct cggtaacgag gaatccctga gcccctgctc cctggctttg ctctaccttc
     3301 acctgcggct tctctgcggt gcccttatgc actccaccct gatctacttc ctggggacct
     3361 tcctgctgtc tgtggtgatc gcctggatgg tgctttatct ccagtgtgtc tcagccagtg
     3421 gctcctctcc agcaccagcc tgggtcttgg cagaccccgc ctcatccacc ccaagtccag
     3481 ctgtgcctcc agctgcagat gcctccgacc acgacccacc tatgatggct aacaaccccg
     3541 agcctcgtgg gtgaactgtg cacctctgac ctctccagct gagagaccac cctttcaaca
     3601 gttggttctg gaaggctggg gccaggcgtt atactgataa ataccttaaa ggtcttgtga
     3661 actggatgcc gactttgccc ttggtgtctt tttgtttaag tttaaacaag aacataccca
     3721 gagcaaacaa attcaaggat tactttgaga acaggggcat ggagggaggt gagctgaggc
     3781 atccgacttt cattcttggt gattgttctg ggaaccacag tccgccttgc caagcgttcg
     3841 tattcccacc catggagaga catttttaaa agttttagtc tttcttcatc cccttttacc
     3901 agggaactgg ctgatgaggc ttcagtacct ctgcttgcca catcctgctc ctcagaggcc
     3961 caactggcag attgctctct gagtcccaaa cccagcagat agaaagagcc ttgaaacaaa
     4021 cggaacagca tatattggga aggcgatagc attgcacatt ggtttacatt tctttccctg
     4081 cggatttttc tagaggtcat agtgcttcca aatcgtttga tgacattatt gggtatcatt
     4141 tatgtttctg tcataataca tgcaataaca tctagagaat cttcgcaa
//
