LOCUS       NM_199082               2245 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus secreted and transmembrane 1B (Sectm1b), mRNA.
ACCESSION   NM_199082 XM_213545
VERSION     NM_199082.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2245)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   2  (bases 1 to 2245)
  AUTHORS   Matsuda,A., Suzuki,Y., Honda,G., Muramatsu,S., Matsuzaki,O.,
            Nagano,Y., Doi,T., Shimotohno,K., Harada,T., Nishida,E., Hayashi,H.
            and Sugano,S.
  TITLE     Large-scale identification and characterization of human genes that
            activate NF-kappaB and MAPK signaling pathways
  JOURNAL   Oncogene 22 (21), 3307-3318 (2003)
   PUBMED   12761501
REFERENCE   3  (bases 1 to 2245)
  AUTHORS   Slentz-Kesler,K.A., Hale,L.P. and Kaufman,R.E.
  TITLE     Identification and characterization of K12 (SECTM1), a novel human
            gene that encodes a Golgi-associated protein with transmembrane and
            secreted isoforms
  JOURNAL   Genomics 47 (3), 327-340 (1998)
   PUBMED   9480746
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Mar 27, 2023 this sequence version replaced NM_199082.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.44700.1, FM088961.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760494
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-35                JAXUCZ010000010.1  106832070-106832104 c
            36-217              JAXUCZ010000010.1  106825215-106825396 c
            218-526             JAXUCZ010000010.1  106824680-106824988 c
            527-2245            JAXUCZ010000010.1  106822397-106824115 c
FEATURES             Location/Qualifiers
     source          1..2245
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.3"
     gene            1..2245
                     /gene="Sectm1b"
                     /gene_synonym="Sectm1"
                     /note="secreted and transmembrane 1B"
                     /db_xref="GeneID:287884"
                     /db_xref="RGD:735132"
     exon            1..35
                     /gene="Sectm1b"
                     /gene_synonym="Sectm1"
                     /inference="alignment:Splign:2.1.0"
     exon            36..217
                     /gene="Sectm1b"
                     /gene_synonym="Sectm1"
                     /inference="alignment:Splign:2.1.0"
     CDS             124..780
                     /gene="Sectm1b"
                     /gene_synonym="Sectm1"
                     /note="secreted and transmembrane protein 1b"
                     /codon_start=1
                     /product="secreted and transmembrane protein 1 precursor"
                     /protein_id="NP_954513.2"
                     /db_xref="GeneID:287884"
                     /db_xref="RGD:735132"
                     /translation="MMVCWATYSGLFPRMLWALLLLAASLNAYNKEWDEPSCTVPEVS
                     AKRGDRVVMACNISNTFRDVTITLTAGEETRTIFKKMPPGNYSKDSWQLQIQGGQAQL
                     VITDAQDIHAGEYWWKLSGFQKNFTNFTLDVTGLATDNQKPESLPVIAEPQTAVRTKA
                     VSVIIIITALTIIAGMSAFAWYKHRRSLKLRGYKFQQIQTPVPGLSHGSPGGPYLILP
                     "
     exon            218..526
                     /gene="Sectm1b"
                     /gene_synonym="Sectm1"
                     /inference="alignment:Splign:2.1.0"
     exon            527..2245
                     /gene="Sectm1b"
                     /gene_synonym="Sectm1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaggagcag gtgagaagct ggagcacaca tccagggtcc aaaaagcaaa caacaacaac
       61 aaaacaaaac aaaaaacact gaccagaaca attgtctcct gaggcccatc caaggaatga
      121 gccatgatgg tctgctgggc aacatactct ggcctgtttc ccagaatgct ctgggccctc
      181 cttctgctgg cagcctccct gaatgcttat aataaagagt gggacgaacc cagttgcact
      241 gtgcctgagg tgtctgcaaa gagaggtgac cgcgtggtga tggcctgcaa catctctaac
      301 acctttagag atgtcaccat aactttgact gccggtgaag agactagaac catcttcaaa
      361 aaaatgcctc caggaaacta ctctaaggac tcatggcaac ttcagattca aggaggccaa
      421 gcccagctgg tgatcacaga tgctcaggac atccacgcag gggagtactg gtggaagctg
      481 agtggattcc agaaaaattt cacaaacttc accctggatg ttactggtct agccactgac
      541 aaccagaaac cagagagctt gccagtcatt gctgagcccc aaactgcagt caggacaaaa
      601 gctgtctccg tcatcatcat catcaccgcc ctcaccatca tcgcaggaat gagtgcattt
      661 gcttggtaca agcaccgccg ttccctgaag ctccgaggat acaaattcca gcagatacaa
      721 acaccagtac ctggtctgag tcatgggtcc cctggtggcc cctacctgat actgccctaa
      781 agtctcccaa tccctgcccc aaaaagatac gtaagaagcc ctgttagctc caaacaacag
      841 actacagaga acctcacctg acaatccaag ccctgacttg ggacaaggtc acaggagctc
      901 tctgtcccca agccctcatt ttgaccttag gacacccaga ggtcagaatg gggtctgtac
      961 tcctcaggtt cctcccaaga ctctagggaa attcacactg agggcagagc tgtggttttt
     1021 aattgaggat gccctggaaa ttgaccgagc ccctcctgta ctcaaaacgt agactctgtt
     1081 ggaatttgag atacatcaaa gtatttgaga ctatcccaag tgtgtgtggt gtctgtttat
     1141 ctgtgtaagc tctctgtgct ggagtatctg tgccttacac aggcctgagc caggatctca
     1201 ggcaacttct ccctctcctc tcctcttccc tttctttcat atttctttcc tttcttcctc
     1261 cctctctgtc tccctctctc tccagatgag gaggctctaa gctttatggg tgataggatc
     1321 ctgaggggag ccccctgcag aatggatctc tattcttgga ggatccagag caatgccaac
     1381 accatggatt tggagcccct ggagccccca ttaccctgcg aacattcatg gacctatcac
     1441 cacccactgg caacagcaag gaagagcctt gtttgtattt gctagacaca gtaacccatg
     1501 tccgacgcct ggggagaggc acgggatccc accatgtcct aagcagagac tgggacatca
     1561 ggtcaccaga aacaggcctc ataagcgatg atctgggcct ctctctgact ctcaataaca
     1621 cactttcccc tgtgatcgct ggttgctcac tctgctcctc tacttttacc aaaattgggg
     1681 aaattccaag tagcacagcc tttggccctc agggcttatt ccctctgcct tttaaagggg
     1741 aggcctgagc tccttccttg ctaaactcac tccacttccc tatggtctcc ggtgccttca
     1801 ggagcttgtg ggagattccg taccagcttt gctccaggtc cacagagcgt gtcttctaac
     1861 tcacagtacc ttcacaggtc ctgttgttag ggcccaagat gatgcaccac cgcactccta
     1921 ccacaagggg gtggtgtggg cctatacgcg gggagccctc agggacaagg agctcattga
     1981 gggggcagag gcccgctagt gggcactgct tttttagggg gacagctggg ccctcggaac
     2041 tcctcgtgaa cctctctcat tgtagaccct ctccctgact tcctacttac ctccaccctc
     2101 acctgctgtt cctcttgggc ccattatctt ccttgtaata ccaactcgaa taatttcatc
     2161 ttctatacac tataactcat tcttcagtaa aacacttcat gatgcaaatt gttaaatata
     2221 gtaaatcaac aattctataa agcca
//
