LOCUS       NM_001168527            4522 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus SECIS binding protein 2-like (Secisbp2l), mRNA.
ACCESSION   NM_001168527 XM_001077702 XM_215843
VERSION     NM_001168527.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4522)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 4522)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On or before Dec 12, 2009 this sequence version replaced
            XM_215843.4, XM_001077702.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.18280.1,
                                           SRR26643284.4674.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760389,
                                           SAMEA5760393 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-275               JAXUCZ010000003.1  133489017-133489291 c
            276-454             JAXUCZ010000003.1  133480691-133480869 c
            455-779             JAXUCZ010000003.1  133475661-133475985 c
            780-915             JAXUCZ010000003.1  133473705-133473840 c
            916-1142            JAXUCZ010000003.1  133471251-133471477 c
            1143-1167           JAXUCZ010000003.1  133470955-133470979 c
            1168-1283           JAXUCZ010000003.1  133470507-133470622 c
            1284-1418           JAXUCZ010000003.1  133464900-133465034 c
            1419-1499           JAXUCZ010000003.1  133463655-133463735 c
            1500-1667           JAXUCZ010000003.1  133462892-133463059 c
            1668-1809           JAXUCZ010000003.1  133462621-133462762 c
            1810-1976           JAXUCZ010000003.1  133459015-133459181 c
            1977-2109           JAXUCZ010000003.1  133457935-133458067 c
            2110-2272           JAXUCZ010000003.1  133456511-133456673 c
            2273-2493           JAXUCZ010000003.1  133453584-133453804 c
            2494-2648           JAXUCZ010000003.1  133452256-133452410 c
            2649-2868           JAXUCZ010000003.1  133450333-133450552 c
            2869-4522           JAXUCZ010000003.1  133445317-133446970 c
FEATURES             Location/Qualifiers
     source          1..4522
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..4522
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /note="SECIS binding protein 2-like"
                     /db_xref="GeneID:296115"
                     /db_xref="RGD:1559930"
     exon            1..275
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
     CDS             252..3521
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /codon_start=1
                     /product="selenocysteine insertion sequence-binding
                     protein 2-like"
                     /protein_id="NP_001161999.1"
                     /db_xref="GeneID:296115"
                     /db_xref="RGD:1559930"
                     /translation="MDRAPAEQNVKLSAEVEPFIPQKKNLDAFVLPMALPTDNGSVSG
                     VEPTPIPSYLITCYPFVQENQSNRQFPLYNNDIRWQQPSPSPTGPYLAYPILSAQPPV
                     STEYTYYQLMPAPCAQVMGFYHPFPTPYSSTFQAANTVNAITTECTERPNQLGQPFPL
                     SSHRSRNGNRGPVVPKPQLLQQHIKNKRPQVKNVATQKETSAAGPDSRSKIVLLVDAS
                     QQTDFPSDIANKSLSESTATMLWKGKGRRRRASHPAAESSSEQGASEADIDSDSGYCS
                     PKHNNQPAPGTLRDPASGTISHSESSGCTGGVNWPKVTCQATQKRPWMEKNQAFSRGG
                     RQTEQRNNSQVGFRCRGHSTSSERRQNLQKRQDNKHLNSTQSHRSDPNSESLYFEDED
                     GFQELSESGNSKDETIQQKLSSKVLDDLPENSPINIVQTPIPITTSVPKRAKSQKKKA
                     LAAALATAQEYSEISMEQKKLQEALSKAAGKKNKTPVQLDLGDMLAALEKQQQAMKAR
                     QITNTRPLAHPVVTTGTFHTKDSNRKTLTRSQPCLTSFNSLDITSSKAKKGKEKEIAK
                     LKRPTALKKVILKEREEKKGRLTVEHSVLGAEELTETNLDLANDLPQETISQEDTGLS
                     MPSDASLSPASQNSPYCMTPVSQGSPASSGIGSPMASSTITKIHSKRFREYCNQVLSK
                     EIDECVTLLLQELVSFQERIYQKDPVRAKARRRLVMGLREVTKHMKLNKIKCVIISPN
                     CEKIQSKGGLDEALYNVIAMAREQEIPFVFALGRKALGRCVNKLVPVSVVGIFNYFGA
                     ESLFNRLVELTEEARKAYKDMVAATEQEQAEEALRSVKAVPHHMGHSRNPSAASAISF
                     CSVISEPISEVNEKEYETNWRSMVETSDGLETSESEKAVPCKHDPAEKPSKLTPDTTQ
                     VGKQPLPPTGSITSAPSQGKPTVDKDELKPDDLEWASQQSTETGSLDGSCRDLLNSSI
                     TSTTSTLVPGMLEEEDDEEEEEEDYIHEPTSEEVQLNSRIESWVSETQRTMETLQLGK
                     ALPGSEEDSAEQSGEEAVEMAEGLESVVDSETWTPDQQPKPSRNVSKEHPDFSSPPPS
                     T"
     exon            276..454
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
     exon            455..779
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
     exon            780..915
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
     exon            916..1142
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
     exon            1143..1167
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
     exon            1168..1283
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
     exon            1284..1418
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
     exon            1419..1499
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
     exon            1500..1667
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
     exon            1668..1809
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
     exon            1810..1976
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
     exon            1977..2109
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
     exon            2110..2272
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
     exon            2273..2493
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
     exon            2494..2648
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
     exon            2649..2868
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
     exon            2869..4522
                     /gene="Secisbp2l"
                     /gene_synonym="RGD1559930"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 catttcctac tgcgcctccg cccttttggc cccgctcggc ttccgtccca gatgatccct
       61 ccccggggcg gccgccgccg cctccaccgc cttgagctag agccgcctcc ccagccagtg
      121 gcgtagccga gtcggcgtct agccggcggt gtgaagcgga cggagcccgg cgggaccgag
      181 cggggggcca tggagaaagc ggcccacggc tctgcgcaca ccgactagag ccggcgcccg
      241 ccgccggcgc catggaccga gcgccggccg agcagaatgt gaagctttct gctgaagtag
      301 agccctttat tccccagaag aagaatctgg atgcgtttgt gctccccatg gctctcccaa
      361 ctgacaatgg aagtgtttct ggggtcgaac caactccaat ccccagttat ctgattactt
      421 gttacccatt tgttcaggaa aaccagtcca atagacaatt tcctttatat aataatgata
      481 tacgatggca gcagcccagc ccaagcccta ctggacccta cctggcctac cccattctat
      541 ctgctcagcc acctgtttcc acagagtaca cctattacca gctgatgcca gcaccctgtg
      601 cccaagttat gggcttctat catcctttcc ctacacctta ctccagcacc ttccaggctg
      661 caaacactgt caatgccata accacagaat gcaccgagcg tccaaatcag ctggggcagc
      721 ctttcccgtt gtccagtcat cggagcagga atggtaatag agggccagtt gtgccaaaac
      781 cacagctttt acaacaacat ataaaaaaca aaagaccaca ggtgaagaac gtggctactc
      841 agaaagaaac aagtgcagca ggtcctgata gccgatcaaa gattgtgctt ctggttgatg
      901 cctcacagca aactgatttc ccatcagaca ttgctaataa gtctctctcg gagagcacag
      961 ccacaatgct ctggaaaggc aaaggcagga ggagaagagc gtcccaccct gctgcagagt
     1021 cctccagtga gcagggggcc agtgaagctg acattgacag cgacagcggt tactgcagcc
     1081 ccaagcacaa caaccagcct gcaccaggga ctctgcgtga ccctgcctct gggaccataa
     1141 gtcattcgga gtcctcgggc tgcacaggtg gtgtaaactg gcccaaagta acttgccagg
     1201 caactcagaa aagaccttgg atggaaaaaa accaggcatt ttctagaggt ggaaggcaaa
     1261 ctgaacaaag aaataattca caggttggat tcagatgccg aggacacagt acttcctcag
     1321 aaagaagaca gaatttgcaa aaaagacaag acaataagca cttaaactct actcagtctc
     1381 acagaagtga cccaaattct gagtctttat attttgagga tgaagatggg tttcaagaac
     1441 taagtgagag cggaaattct aaagatgaga ctattcaaca gaaactttct tcaaaagtat
     1501 tggatgacct acctgagaac tcacccatca atatagttca gactccgatc cccattacca
     1561 cctcagttcc taaacgagct aagagtcaga agaaaaaggc cttagctgca gcccttgcca
     1621 cagcacagga atactcagaa ataagtatgg agcaaaaaaa gttgcaggaa gctctatcaa
     1681 aagcagctgg aaaaaagaat aaaaccccag tgcagctgga tttaggggat atgctggctg
     1741 ctctggagaa gcaacagcag gcaatgaaag cccgtcagat caccaacacc agaccgctgg
     1801 cacatccagt tgtcaccaca ggcacttttc acactaaaga ctctaacaga aaaaccctga
     1861 ccagaagtca gccgtgcttg acatccttta attctctgga cattacttcc tctaaagcaa
     1921 aaaagggaaa agagaaggaa attgcaaagc tgaaacgacc cacagcgctg aaaaaggtta
     1981 ttttgaaaga aagagaggag aagaaaggac gtctgacggt ggaacatagt gttttgggag
     2041 ccgaagaact gacggagacg aatttggacc tagccaatga cttacctcag gagactatct
     2101 cccaggaaga tactggactg agcatgccca gtgatgcttc tctttctcca gcaagtcaga
     2161 actctccata ctgtatgaca cctgtgtcgc aaggctcacc tgctagttct ggcataggta
     2221 gtccaatggc atcgtcaacg ataaccaaaa tccacagcaa aagatttcga gaatattgta
     2281 accaggttct ttctaaagaa attgatgaat gtgtgaccct ccttctgcaa gaacttgtca
     2341 gtttccagga acgcatctac caaaaggacc ctgtgagagc caaagccaga cggcggctgg
     2401 tcatggggct tcgggaagtc accaagcaca tgaagctgaa caagatcaag tgcgtcatca
     2461 tctccccaaa ctgtgagaag atccagtcaa agggtggcct tgatgaggcc ctctacaatg
     2521 tcatagccat ggcccgggag caagagattc cttttgtgtt tgcccttgga aggaaagctc
     2581 tgggacgctg cgtgaacaag ctggttcctg ttagtgttgt aggaatcttc aattattttg
     2641 gtgctgagag cctgtttaat agattagtgg agctcacgga ggaagccagg aaggcatata
     2701 aggacatggt tgccgcaaca gagcaggagc aagcagagga ggcattgagg agtgtgaagg
     2761 ccgtgcctca ccacatgggc cactcgcgca acccctcggc agcaagcgcc atttctttct
     2821 gcagtgttat ttctgaaccc atttctgaag taaatgaaaa ggaatatgaa actaattgga
     2881 gaagcatggt ggagacttca gacggcttgg aaacatcaga aagcgagaag gcggttccct
     2941 gtaagcacga ccctgctgag aagcccagca aactcacccc tgacaccacc caggtgggta
     3001 agcagccact gccgcccaca ggcagcatca cctcagcgcc aagccagggg aaacccacgg
     3061 ttgacaagga tgagctgaag ccagacgacc tggagtgggc ctcgcagcag agcacagaga
     3121 cgggctcctt ggatggcagc tgccgggatc ttttgaattc ctccatcacc agcaccacca
     3181 gcactcttgt tcctggcatg cttgaagaag aggatgatga ggaggaggag gaggaagatt
     3241 atattcatga acccacgtca gaagaagtac agctcaatag taggattgag tcctgggtct
     3301 ccgagaccca gaggactatg gagacgctgc agcttggcaa agcccttcct ggctccgagg
     3361 aagacagtgc agagcaaagt ggagaggaag cagtggaaat ggccgagggg ctggagtcgg
     3421 tggtcgacag tgagacctgg actcctgacc agcagccgaa gcccagcagg aacgtgagca
     3481 aagagcaccc tgatttcagt tcccctcccc caagtaccta actcaggaag tgctggctgc
     3541 ggccatgtcc ctgacctcca tctccgcatc ttccactgtc cagtccctca ctgtgtttat
     3601 aattcccaac agacttttta tagctcttat tttgttatga tctctggctt cgcttttaac
     3661 agtgtccaag tcaatttcta agaattgttt agaaaactca gacttgtttc aacttacttt
     3721 gtaatgaaaa ataatgacta aagaaagaag accaaattct aaagaaaaac aaaagcaaaa
     3781 ctaaaaaaaa aaaaaacaaa aaaacaaaaa caaaacaaga aacccaaata aacaaaaacc
     3841 tagtggctac ttaaggtcat tttacaaatt aaagatgggg gttctaagga ccagtgtttg
     3901 ctcgcatacc catctccttc agggtaatct gtctgtcccg gttatggaag ctgcttgtga
     3961 agagagctgg aagtagcatc aggactaagg gctgaggcag caaggctgta cagtgctgct
     4021 gtgcgctaaa aatggatgca gattttattt tgtccactga tcattgtaac ccgtgaaagt
     4081 tgggatgggc taaagcggct tgcaggagtt aggtgagcac tggcgtgtta ccatgctgct
     4141 ctcgtttgtg ggaaggggta gatgtctgga agagcaaaca gtcaccatgg tgggacttgc
     4201 caggttcagt ctaacacttg ccttttacct caggaatgct cttgtacata gtatgtaaag
     4261 ctaggcaagc tctgacaggc gagcagagcg caggtttata ccagggcagc acttccctgc
     4321 agacaccaga agcaaggctg tcctgctgtg ctctgatgct agcatttgct gtaggaccct
     4381 cttggtttga ggtgtggatc tgtttgcata ttcaaatgcg tccacattgg aaatcatttc
     4441 atctgttttt taaacataca tttctacacc ttcctcagag caagaaccac agttacagga
     4501 agtcagggaa agaattttgc ac
//
