LOCUS       NM_001135713            3625 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus SEC31 homolog B, COPII coat complex component
            (Sec31b), mRNA.
ACCESSION   NM_001135713 XM_219960
VERSION     NM_001135713.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3625)
  AUTHORS   Fusco,C., Micale,L., Egorov,M., Monti,M., D'Addetta,E.V.,
            Augello,B., Cozzolino,F., Calcagni,A., Fontana,A., Polishchuk,R.S.,
            Didelot,G., Reymond,A., Pucci,P. and Merla,G.
  TITLE     The E3-ubiquitin ligase TRIM50 interacts with HDAC6 and p62, and
            promotes the sequestration and clearance of ubiquitinated proteins
            into the aggresome
  JOURNAL   PLoS One 7 (7), e40440 (2012)
   PUBMED   22792322
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Oct 8, 2008 this sequence version replaced XM_219960.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386
                              [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-77                JAXUCZ010000001.1  253353703-253353779 c
            78-164              JAXUCZ010000001.1  253351669-253351755 c
            165-288             JAXUCZ010000001.1  253351262-253351385 c
            289-484             JAXUCZ010000001.1  253346823-253347018 c
            485-580             JAXUCZ010000001.1  253346529-253346624 c
            581-724             JAXUCZ010000001.1  253345489-253345632 c
            725-867             JAXUCZ010000001.1  253345039-253345181 c
            868-967             JAXUCZ010000001.1  253343397-253343496 c
            968-1132            JAXUCZ010000001.1  253343108-253343272 c
            1133-1267           JAXUCZ010000001.1  253342494-253342628 c
            1268-1498           JAXUCZ010000001.1  253339884-253340114 c
            1499-1573           JAXUCZ010000001.1  253338301-253338375 c
            1574-1672           JAXUCZ010000001.1  253337976-253338074 c
            1673-1772           JAXUCZ010000001.1  253337626-253337725 c
            1773-1951           JAXUCZ010000001.1  253336595-253336773 c
            1952-2078           JAXUCZ010000001.1  253336255-253336381 c
            2079-2224           JAXUCZ010000001.1  253335630-253335775 c
            2225-2398           JAXUCZ010000001.1  253334841-253335014 c
            2399-2560           JAXUCZ010000001.1  253334195-253334356 c
            2561-2732           JAXUCZ010000001.1  253331190-253331361 c
            2733-3047           JAXUCZ010000001.1  253330058-253330372 c
            3048-3106           JAXUCZ010000001.1  253329767-253329825 c
            3107-3256           JAXUCZ010000001.1  253329383-253329532 c
            3257-3373           JAXUCZ010000001.1  253329050-253329166 c
            3374-3445           JAXUCZ010000001.1  253328598-253328669 c
            3446-3625           JAXUCZ010000001.1  253328233-253328412 c
FEATURES             Location/Qualifiers
     source          1..3625
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q54"
     gene            1..3625
                     /gene="Sec31b"
                     /note="SEC31 homolog B, COPII coat complex component"
                     /db_xref="GeneID:309433"
                     /db_xref="RGD:1598329"
     exon            1..77
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            78..164
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     CDS             86..3625
                     /gene="Sec31b"
                     /note="SEC31 homolog B, COPII coating complex component"
                     /codon_start=1
                     /product="protein transport protein Sec31B"
                     /protein_id="NP_001129185.1"
                     /db_xref="GeneID:309433"
                     /db_xref="RGD:1598329"
                     /translation="MKLKELEKPAVQAWSPAKQYPVYLATGTSAQQLDASFSTNATLE
                     IFEVDFRDPSLDLKRKGILSVSSRFHKLIWGSSSSGLLENTGVIAGGGDSGMLTLYNV
                     THILSPGKEPLIAQKQKHTGAVRALDFNPFQGNLLASGASDSEIFIWDLNHLTVPMTP
                     GSKSQNPPEDIKALSWNRQVQHILSSAHPSGKAVVWDLRKNEPIIKVSDHSSRMNCSG
                     LAWNPDIATQLVLCSEDDRLPVIQLWDLRFASSPLKVLESHSRGILSVSWSQADAELL
                     LSSAKDNQIFCWNLSSSEVVYKLPTQSSWCFDVQWCPRNPPAFSAVSFDGWISLYSVM
                     GRSWEAQQHMRQADKISSSFSQGQPLPPLQVPEQVAQASLIPPLKKPPKWMRRPAGVS
                     FAFGGKLVTFGLPSIPVQQVPQPCPRPVFISQVITESEFLTRSVVLQEALGSGNLLNY
                     CQSKIQQASRPSEKTLWQFLKVTLEHDSRLKFLRLLGYSRDELQKKVDTCLKSDSKSQ
                     ESPQLEAVDLKSDRAHTLCSQASRHTAKEASASSAFFDELIPQNMTPWEIPTTEDTDG
                     LLSQALLLGELRSAVELCLKEERFADAIILAQAGDAELLKWTQERYLAKRRTKTSSLL
                     ACVVKKNWKDLVCACSLKNWREALALLLTYSGPEKFPELCDMLGARMEHEGGRELTSE
                     ARLCYVCSGSVERLVESWADSQQASSPVALQELMEQVTVLSRSLELLQGSHKMSPGPA
                     TTHRFTQYASLLAAQGSLAIAMSVLPSDCTQPAVLQLKDRLFHAQGSTVLGRQAPAFP
                     FPRVAVGAALHPKETSSHRMGFQPPRQVPAPSVRPRAAAQPSVMPFLPSHPIPSVGSW
                     TQSSSDYRVPKPQATLPVHFVPGVRPAFSQPQPFGGQSVQAINPVGFCGTWPLPGPTP
                     VMAPPDVMQPGSTHLPETPRLLPLPPVGPPGPTPLSSQPAASPVTFSVAHPPGGPGAP
                     RSSALPSSGILATRPGPQDTWKVAPASQENLQRKKLPETFMPPAPIITAPLMSLGPEP
                     QQALLPQSLVSGASLPPPGAPRECSLQQLQPLPPEKTQKELPPEHQCLKDSFEALLQR
                     CSLTATDLKTKRKLDEAAHRLECLYEKLCEGTLSPHVLAGLHEVARCVDAGSFEQGLA
                     VHAQVVSCSSFSEVSSFMPVLKAVLTIAHKLQG"
     exon            165..288
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            289..484
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            485..580
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            581..724
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            725..867
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            868..967
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            968..1132
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            1133..1267
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            1268..1498
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            1499..1573
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            1574..1672
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            1673..1772
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            1773..1951
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            1952..2078
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            2079..2224
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            2225..2398
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            2399..2560
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            2561..2732
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            2733..3047
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            3048..3106
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            3107..3256
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            3257..3373
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            3374..3445
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
     exon            3446..3625
                     /gene="Sec31b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcactctgaa gcgctaggct gagacaggac cggttcagga ggtcgcccgt gacccctgac
       61 ctgggcgctc ggtacagggc agacaatgaa gttgaaggag cttgagaagc cagctgtcca
      121 agcatggagc ccagcgaagc agtaccctgt gtatctggcc acaggaacat ccgcccagca
      181 actagatgcc tccttcagca caaatgccac cctggaaata tttgaggttg atttcaggga
      241 cccttctctg gacttgaaac gcaaaggaat cctctctgtg tcaagcaggt ttcacaagct
      301 aatctgggga agctccagca gtgggcttct ggagaacact ggggttattg ctggtggagg
      361 agacagtggc atgcttaccc tatacaatgt gacccacatc ctttctccgg ggaaggaacc
      421 cttgattgcc cagaaacaga agcacacagg agctgtcaga gccttggact ttaatccttt
      481 ccagggcaac ctcctggcct caggagccag tgattctgaa atcttcattt gggatttgaa
      541 ccacctgact gttccaatga cacctggatc caagtcacag aaccccccgg aagacattaa
      601 agcattgtct tggaaccgcc aagtccagca cattctgtct tctgctcacc ccagtggcaa
      661 ggcagttgtg tgggatctca ggaagaacga gcccatcatc aaagtcagcg accacagcag
      721 caggatgaac tgctcaggcc tggcctggaa cccagacata gccacacagt tagtgctgtg
      781 ctcagaagat gaccggctcc cagtgattca gctgtgggac ctgcgcttcg cttcctcacc
      841 cctgaaggtg ttggagagcc acagcagggg catcttgtcg gtgtcctgga gccaggctga
      901 tgctgaactg ctgcttagca gtgccaaaga caaccagatt ttttgctgga atctgtcaag
      961 cagtgaggtg gtctacaagc tacccacaca gagcagctgg tgctttgacg ttcagtggtg
     1021 ccctcggaac cctcctgcgt tctctgctgt ctccttcgat ggctggatca gtttgtactc
     1081 tgtgatgggt aggagctggg aagcccagca gcacatgagg caggctgaca agatttcctc
     1141 ttcctttagc caaggccagc ctctcccacc actgcaggtg cctgagcagg tggcccaagc
     1201 atcactaatt cctcccttga agaagcctcc caagtggatg agaaggccgg caggcgtttc
     1261 attcgctttt gggggaaagc tggttacctt tggccttccc agcatccctg tccagcaggt
     1321 gccacagcct tgtccccgcc ctgtcttcat cagtcaagtc atcacagagt cagaattcct
     1381 gactcggtca gttgtgctgc aggaggcctt gggatctgga aatctcctta attattgtca
     1441 gagcaagatt cagcaagctt cacggccaag tgagaagacg ctctggcagt ttctgaaggt
     1501 gaccttggag catgattcca gactgaagtt cctcaggctg ttaggttaca gcagagatga
     1561 acttcagaag aaggtggaca catgcctgaa gagtgactcg aaatcacagg agagccctca
     1621 gcttgaggca gttgacctca aaagtgacag agcacacacc ctttgcagcc aggcctccag
     1681 acacactgcc aaggaagcct ctgcatcctc agccttcttt gatgagctga tacctcagaa
     1741 catgactccc tgggagatcc ccaccacaga agacactgat gggctcctga gccaggccct
     1801 gctgctcggg gaactgcggt ctgctgtgga gctctgtctg aaagaggaac gctttgctga
     1861 cgccatcatc ctggctcagg ctggggacgc agagctactc aagtggacac aagaacgata
     1921 cctagccaag aggagaacca aaacctcctc gcttctagcc tgtgtcgtaa agaagaattg
     1981 gaaggaccta gtatgtgcct gtagcctgaa gaactggaga gaggcgctgg ccttgctgct
     2041 gacgtattca gggccagaga agttccctga gctctgtgac atgctgggag ctcgcatgga
     2101 gcacgaggga ggcagggagc tcacctctga agccaggctg tgctatgtgt gctcagggag
     2161 tgtggagcgg ctggtagaga gctgggcaga ctcccagcaa gcctcgagcc ccgtggctct
     2221 gcaggagcta atggagcagg tgacggtcct cagcaggagc ctggagctcc tccagggttc
     2281 tcacaagatg agcccaggtc ctgccacaac acacaggttc acccagtatg ccagtctcct
     2341 ggcagcccag ggcagcctgg ccattgccat gagtgtccta cccagtgact gtacccagcc
     2401 cgcagtcctg cagctgaaag atcggctttt ccatgcccaa ggttctaccg tcttgggccg
     2461 acaggctcct gctttcccgt ttccccgcgt tgctgtagga gctgctctcc acccaaaaga
     2521 gacatcatca cacagaatgg gattccagcc tcctcgccag gtcccagctc catctgtgag
     2581 gccgagggcc gcagctcagc cgtcagtgat gcctttcctc ccctcccatc ccatcccttc
     2641 tgtgggctcg tggacacagt cctcaagtga ctacagggtc cccaaacccc aagcaacctt
     2701 gcctgtgcat ttcgtccctg gagtaaggcc tgctttctct cagccacagc cattcggagg
     2761 acaaagtgtc caagctataa accctgttgg attctgtgga acatggcctc ttcctggtcc
     2821 tactccagtc atggcacccc cagatgtcat gcagcctggc tctacccacc tgcctgaaac
     2881 tcctagactg ctccctctgc ctcctgtggg accaccaggt cccacccctc tgagctccca
     2941 acctgcagcc tctcctgtca ctttctctgt ggctcaccct cctggcggcc ctggagcacc
     3001 acgctctagt gccctcccga gctctggcat cttggccact cgtccaggac cccaggatac
     3061 ctggaaagtt gctccagcct cccaggaaaa cctccaaagg aaaaagttgc ctgagacatt
     3121 tatgcctcca gcaccaataa ttacagctcc acttatgagc cttggccctg agccacaaca
     3181 ggccctgctg ccacagtccc tagtctccgg tgcaagcctg cctcctcctg gagccccgag
     3241 agaatgcagc ctgcagcaac tccagccact gccccctgag aagacacaga aagagctgcc
     3301 cccagagcat cagtgcctga aggacagctt tgaggcgctc cttcagcgct gttccctgac
     3361 cgccactgac ctaaaaacaa aaaggaagct ggatgaggca gcccaccgtc tagaatgtct
     3421 atacgagaag ctgtgcgagg ggacactctc accccatgtc ctggctgggc tccatgaagt
     3481 cgcccgctgt gtggatgcag gaagctttga acagggcctt gcagtgcatg cccaggtagt
     3541 gagctgcagc agcttcagcg aggtatccag cttcatgcct gtcctgaagg ctgtcctcac
     3601 catcgcgcac aagctgcagg gctaa
//
