LOCUS       NM_001134859            3697 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus SEC23 interacting protein (Sec23ip), mRNA.
ACCESSION   NM_001134859 XM_001080274
VERSION     NM_001134859.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3697)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   2  (bases 1 to 3697)
  AUTHORS   Arimitsu,N., Kogure,T., Baba,T., Nakao,K., Hamamoto,H.,
            Sekimizu,K., Yamamoto,A., Nakanishi,H., Taguchi,R., Tagaya,M. and
            Tani,K.
  TITLE     p125/Sec23-interacting protein (Sec23ip) is required for
            spermiogenesis
  JOURNAL   FEBS Lett 585 (14), 2171-2176 (2011)
   PUBMED   21640725
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Sep 10, 2008 this sequence version replaced XM_001080274.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.5583.1,
                                           SRR26643287.2393.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-308               JAXUCZ010000001.1  192751381-192751688
            309-838             JAXUCZ010000001.1  192757108-192757637
            839-1049            JAXUCZ010000001.1  192760176-192760386
            1050-1243           JAXUCZ010000001.1  192761562-192761755
            1244-1333           JAXUCZ010000001.1  192764737-192764826
            1334-1454           JAXUCZ010000001.1  192766675-192766795
            1455-1544           JAXUCZ010000001.1  192770122-192770211
            1545-1686           JAXUCZ010000001.1  192770919-192771060
            1687-1895           JAXUCZ010000001.1  192772282-192772490
            1896-2014           JAXUCZ010000001.1  192773677-192773795
            2015-2167           JAXUCZ010000001.1  192774263-192774415
            2168-2263           JAXUCZ010000001.1  192775968-192776063
            2264-2461           JAXUCZ010000001.1  192779510-192779707
            2462-2617           JAXUCZ010000001.1  192785849-192786004
            2618-2720           JAXUCZ010000001.1  192786368-192786470
            2721-2906           JAXUCZ010000001.1  192787438-192787623
            2907-3069           JAXUCZ010000001.1  192788252-192788414
            3070-3171           JAXUCZ010000001.1  192788986-192789087
            3172-3697           JAXUCZ010000001.1  192793165-192793690
FEATURES             Location/Qualifiers
     source          1..3697
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q37"
     gene            1..3697
                     /gene="Sec23ip"
                     /note="SEC23 interacting protein"
                     /db_xref="GeneID:309010"
                     /db_xref="RGD:1309328"
     exon            1..308
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     CDS             152..3151
                     /gene="Sec23ip"
                     /codon_start=1
                     /product="SEC23-interacting protein"
                     /protein_id="NP_001128331.1"
                     /db_xref="GeneID:309010"
                     /db_xref="RGD:1309328"
                     /translation="MADRKANGGGASASSSGTNLLFSSSATEFSFNVPFIPVTQAAAS
                     PASLLLPGEDSTDVGEEDSFLGQTSTHTSTPQTFSYFSQVSSSSDPFGNIGQSPLATT
                     AMSAGQSALPKPPATLPFTTGSQDMLNAFPPSVSKAPYGAAPSSQMGASTYLPSQPSS
                     LPPNFGSPPQGIPQQGHNPYRHTPVSSRANPYITPPQLQQCQTPGHPSYPPPSAPPVQ
                     TYQMPPGPLPPLPTAVQSPAQQQVPARPAGPLVQGPSPFVLQNQYEPVQPHWFYCKEV
                     EYKQLWMPFSVLDSLNLEEIYNSVQPDPENVVLGTDGGRYDVYLYDRMRKSVYWEEEP
                     AEVRRCTWFYKGDTDSRFIPYTEEFSEKLEAEYKKAVTTNQWHRRLEFPSGETIVMHN
                     PKVIVQFQPSSVPDEWGTTQDGQTRPRVVKRGIDDNLDEIPDGEMPQVDHLVFMVHGI
                     GPVCDLRFRSIIECVDDFRVVSLKLLQTHFKKSVDEGKVSRVEFLPVHWHSALGGHAT
                     GVDRNIKKITLPSIGRFRHFTNETLLDVLFYNSPTYCQSIVEKVGVEINRLHSLFMSR
                     NPNFKGKVSVAGHSLGSLILFDILSNQKDMSISKSPGSVAVSNGVTKHSNFQEKQVSE
                     ESKLMSDESCDLDVEDEEPLTLHGTLEALSLFDYISTFEKEKIDMESLLMCTVDDLKE
                     MGIPLGPRKKIANFVKLKAAKLEQKKAASEKKAALAALTKGQGESAPKTKEMASPSSE
                     SNESKRKLSVGAYVSSVRVDYESFEVGTGQVSVAYSSLDFEPEIFFALGSPIGMFLTI
                     RGVDRIDESYRLPTCKGFFNIYHPLDPVAYRLEPMIAPDLDLKAVLIPHHKGRKRLHL
                     ELKESLSRMGSDLKQGFISSLKSAWQTLNEFARAHTSSTQLQEELEKVANQIKEEEEK
                     QVVEAEKIVESPEFSKDEDYLGKVGMLNGGRRIDYVLQEKPIESFNEYLFALQSHLCY
                     WESEDTALLLLKEIYRTMNISPEQPQH"
     exon            309..838
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     exon            839..1049
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1050..1243
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1244..1333
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1334..1454
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1455..1544
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1545..1686
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1687..1895
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1896..2014
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     exon            2015..2167
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     exon            2168..2263
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     exon            2264..2461
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     exon            2462..2617
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     exon            2618..2720
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     exon            2721..2906
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     exon            2907..3069
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     exon            3070..3171
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
     exon            3172..3697
                     /gene="Sec23ip"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcagcttcc ggaagaaaat cggtccctta gtcgctgtcc tgtggtcacc gtgcgcaggt
       61 gcggaagtgc ggtggcatgc tcaggaccgg tttccggtct gtgtgaggca ccgggctcgc
      121 agagccacgt aacggacggg ggtctgcaac catggcggat aggaaggcta acggtggcgg
      181 agcgtccgcc tcctcgtcag gcactaactt actcttctcc tcctcggcca cggagttcag
      241 tttcaacgtg cccttcatcc ccgtcacgca ggccgccgcc tccccggctt ccctgctctt
      301 acccggagaa gactccacag atgttggtga ggaggatagc ttccttggtc agacttcaac
      361 tcacacatcc accccacaga cattcagtta cttctctcag gtatcaagca gtagtgatcc
      421 atttgggaac attggacagt cgcccttagc gaccacagca atgtcggctg gacagtcagc
      481 acttcccaag cccccagcca cactcccttt tacaactgga tcccaagaca tgctgaatgc
      541 atttccaccc tctgtttcca aggctcccta tggtgctgcg ccttcctcac agatgggagc
      601 aagcacctat ttgccttctc agccaagtag tctccctcca aattttggga gcccacccca
      661 agggattcct caacaaggac ataacccgta tcgccacact cctgtcagca gccgggcaaa
      721 tccctatata acacctccac aactacagca gtgtcagacg ccgggccacc cctcctaccc
      781 tccaccctct gcacccccag tgcagacata ccaaatgccg ccaggaccat tgccaccgct
      841 tcctacagca gtgcaatcac cagcgcagca acaagtccca gccagacctg caggacccct
      901 tgtacagggg ccatctcctt ttgtacttca gaaccagtat gaacctgtcc agccacactg
      961 gttttactgc aaggaggtgg aatataaaca actgtggatg cctttcagtg tgcttgactc
     1021 tctgaatctt gaagagatct ataattcagt gcagccagat cctgagaatg tggttctagg
     1081 cacggatggc ggacgctatg atgtgtacct ttatgaccgc atgaggaagt ctgtgtactg
     1141 ggaagaggag ccggctgaag tgagacgctg tacttggttt tacaaggggg acacagatag
     1201 cagatttatt ccctatacag aggagttcag tgaaaaacta gaggccgagt ataaaaaagc
     1261 tgtgaccaca aaccagtggc accgcaggct agagtttcca agtggagaga ctatcgtgat
     1321 gcacaaccca aaggttattg tgcagttcca gccttcttca gtaccagatg agtgggggac
     1381 aacacaagat ggacagacga ggcccagagt tgtaaagcgt ggaattgacg acaaccttga
     1441 tgaaattcct gacggggaaa tgcctcaagt tgaccatttg gtgttcatgg tgcatggcat
     1501 tgggccagtg tgtgacttgc gctttagaag cattattgaa tgtgtggatg attttagggt
     1561 ggtttctctc aagttgctgc agacacactt caagaagtct gtagatgaag ggaaagtcag
     1621 cagagtggag ttcctgccag ttcactggca cagcgccttg ggtgggcacg ccacgggtgt
     1681 tgacaggaac atcaagaaaa ttactttgcc aagtattggt cggttccggc actttaccaa
     1741 tgaaactctg ctggatgtgt tgttttacaa cagccctacc tactgtcagt caattgtgga
     1801 gaaagtggga gtggagataa accggctaca ctcgcttttt atgagtcgga acccaaactt
     1861 caaagggaag gtctcggtcg ctggtcacag cttaggctct ttgatactgt ttgacatatt
     1921 gtctaatcag aaagatatga gtatctctaa gtctccagga tctgtggctg tttctaatgg
     1981 agttacgaaa cattcgaatt ttcaggaaaa gcaggtctcc gaagagtcaa agctgatgtc
     2041 agacgagtca tgtgaccttg atgttgaaga tgaagaaccc ctaactttgc atggaaccct
     2101 ggaagcactc agcctgtttg attacattag cacttttgaa aaggaaaaga ttgatatgga
     2161 atctctgctt atgtgtacag ttgatgacct gaaggagatg gggattcccc ttgggcccag
     2221 aaagaagata gccaattttg taaaacttaa agcagccaaa ctggagcaga aaaaagcagc
     2281 atcagaaaag aaggcagcgc tggctgcttt gacaaaagga caaggtgaga gtgctccaaa
     2341 aactaaggaa atggcctctc catcttcaga atcaaacgag tccaagagga agctctcagt
     2401 tggggcttat gtgtcgtctg tacgtgtcga ttatgaatct tttgaagttg gcacaggaca
     2461 ggtttctgtt gcttacagct cgttagactt tgaaccagag attttctttg ccttgggctc
     2521 tcctattggc atgtttctca ctattcgcgg cgtggacagg attgatgaga gctatcgcct
     2581 ccctacctgc aaaggcttct tcaatattta ccatccgctc gaccccgtgg catacagatt
     2641 agagcccatg attgctccag atttggactt aaaagctgtt ctcattccac atcacaaagg
     2701 cagaaagaga cttcacttag agttgaaaga aagcctttct cgaatggggt ctgatttgaa
     2761 gcagggtttt atcagctctc tgaaaagtgc ttggcagaca ctcaatgaat tcgcacgtgc
     2821 tcacacctct tctactcagc tgcaagaaga attggagaag gtggccaatc agatcaaaga
     2881 ggaagaggaa aagcaagtag ttgaagcaga aaagattgtt gaaagtccag aattttccaa
     2941 ggatgaggac tacttaggaa aggttgggat gttaaatgga ggccgccgga ttgattatgt
     3001 tcttcaagag aagccaatcg agagcttcaa tgagtatctc ttcgctcttc agagtcactt
     3061 gtgctattgg gagtccgaag atactgccct cttgttactt aaagaaattt atcggacaat
     3121 gaacattagt ccagagcagc cccaacactg agcagacttg cattctacca ggaagctcca
     3181 gcttgagtgt cactgctcag aggctccttg gtggctgatg aaggatgaca gaatcgttac
     3241 tcagcaacaa ctgctaacga ggacttctca gatgcaggga tcggttttta aaacagaaca
     3301 taaagatgct gggaaaagtc agtatcatat ttggacagtc tagaaggaga gctgcaacca
     3361 tgaaatgatg ctgtggggaa ttctcgatct gtttagttaa gtagttatct aaattaagtg
     3421 tgtactaatg aagagatatt cgtagcatgc aaatggttat ttctatttct taaaactatt
     3481 gtcaatgggc tattaaactt tatttttctt tgtattaatg caatatgtta tttttattta
     3541 aatatggact tcttgagaaa ctgtagtaac atgattttta agaaacttat gctagactgg
     3601 gcatggtggc acatgccttt aatcccagca ctcaagaagc aaaggcaggt ggatctctga
     3661 gaggaagatg gcctggtctg tatcacaggt ttcagga
//
