LOCUS       XM_039082762            6697 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SEC22 homolog C, vesicle trafficking
            protein (Sec22c), transcript variant X3, mRNA.
ACCESSION   XM_039082762
VERSION     XM_039082762.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082762.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6697
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6697
                     /gene="Sec22c"
                     /note="SEC22 homolog C, vesicle trafficking protein;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 36 ESTs, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 33 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:687022"
                     /db_xref="RGD:1590146"
     CDS             995..1915
                     /gene="Sec22c"
                     /codon_start=1
                     /product="vesicle-trafficking protein SEC22c isoform X1"
                     /protein_id="XP_038938690.1"
                     /db_xref="GeneID:687022"
                     /db_xref="RGD:1590146"
                     /translation="MSMILFASIVRVRDGLPLSASTDFYHAQEFLECRRQLKALAQRL
                     AQHPGRGSAESCDFRIYFLSSGDVACMAICSRQCPAAMAFCFLEALWWDFIASYDTTC
                     IGLASRPYTFLEFDSVIQKTKWHFNHMSSSQMKSGLEKIQEELKSQPPAVVSLEGTDV
                     ANGLLNGHAPAHSEPAPNLRMKPVTALGVLSLVLNIMCAALNLIRGVHLAEHSLQVAQ
                     EEVGNILAFFIPSVACIVQSNPDSEGAVDAGLHLPGQCVPARAEEHLANPLPRRGGFS
                     VFISDPDQTAAGEAVRLRSVRRTSCTGWHL"
ORIGIN      
        1 ggggagcaag ttctgtgctt cattgaattg cacttggcct cagaatcagg aaagctgggg
       61 ctaaggatgt ggctcagtgg gtaatgctct tgtctaggag gcaggaaacc ctggggttga
      121 gctgcagcgc acaagctggc tgtggaagca cacattggca atcccagcac ccgggaaata
      181 gaggcagcag gatcaactgc tacatagtga attcaaggtc agcttaggat acatagactc
      241 tgtctcaagg agtaaaaatg aagtatccgt gaagttgatg gtgtagtgtt agagagaagc
      301 tgaggtcctg agaaccagac ttccaaggag agcctggagt tctgacgtat ggagagggtg
      361 acagggctga tccggggttt tctagttcag gcattctatc aaaatcgatg catcctcagc
      421 cccacagagt actgtgcaca agtgaatgtc tctgaaacac aagaactctc ttttgcccaa
      481 cagcctgaga cttggggaac cttcccctga ccccgaactc caagtcaagt gtaaattctc
      541 tttggaaccc atggttctgt gaagcatgac ttctgtttag acacctttcc tgcctggttc
      601 cctaccccct tctcttgata tggtttctgt gttcacacgt gctgtgtaca cagtgagcgg
      661 cacacaatgg tgctcagcat ttgtcaaaac agttaagggc ctaactttgc tacccaatct
      721 ccctccagcc acgtagagag ggtgtgttgc tcggagatcg gactttggca cctcctccag
      781 gctggcagaa ggctatatgc tcttcggatc ttctatctcg ggcctcctgc ccaactgcat
      841 agcctgcaag aacccacgcc cagggagtgt cactccagtc aaggggcctg gacgcctccg
      901 gagaacagcc ctgtccgctc ccgggcagga atcgagggga catcggagcc tctacacacg
      961 gttcgaggtg tcctcatgac ttctctctcg gaccatgtcc atgatccttt ttgccagcat
     1021 agtacgggtg agggatggat tgcccctctc ggcctccact gacttttacc acgcccagga
     1081 gtttctggaa tgcaggaggc agctcaaggc cttagcccag aggctggctc agcatccagg
     1141 ccgaggctcg gcagagagtt gtgacttccg tatctatttc ttgtcatcgg gggacgtggc
     1201 ctgcatggcc atctgctcac gtcagtgccc agcagccatg gccttctgct tcttggaggc
     1261 tctgtggtgg gacttcatag cttcctatga cactacctgc atcggcctgg cctcccggcc
     1321 ctacactttc cttgagtttg acagtgtcat tcagaaaaca aagtggcatt ttaaccacat
     1381 gagctcctcc cagatgaaga gtggcttaga aaagattcaa gaggagctga agtcccagcc
     1441 tccagcagtc gtgtccctgg agggcacaga tgtggcaaat ggcttgctga atggccacgc
     1501 cccagcgcac tctgaacctg cgccgaatct ccggatgaag ccggtgacag ccctgggcgt
     1561 cctctccctt gttcttaaca tcatgtgcgc ggccctgaac ctcatccgtg gagttcacct
     1621 tgcagagcat tctttacagg ttgcccagga ggaggttgga aacatcctgg ctttctttat
     1681 tccttctgtg gcctgcatcg tccagtccaa cccggactct gaaggtgctg ttgatgctgg
     1741 cctccatctg cctgggcaat gcgtacctgc acgggctgag gaacacctgg caaatcctct
     1801 tccacgtagg ggtggctttt ctgtcttcat atcagatcct gaccagacag ctgcaggaga
     1861 ggcagtccga ctacggagtg tgaggaggac atcgtgtact ggatggcacc tttgatttcc
     1921 cccctcccct ctggaaggcc agtctgtttc cactcctgct tctcaacttc acctcaaacc
     1981 tccatccttg tcgctcccga ggtcacaggt tctggcaggt gcagtggagg acccgggact
     2041 gctggttgcc agtcctggtt tgtgtggacc gtttgtgaag ggccaccagc cgagcacggg
     2101 acagggcagc tggagcaggc aggcgcttgc tcagagagca tcttcaacgg tcagagtggc
     2161 cgcatcttgg tctcctaaat ctaatgataa cctcaaacca ctagattcca caatggtaga
     2221 tttagtaaat ggccggcgtc tgtgaggagg cttcagagtt gacgtcaatt tgcaggttcc
     2281 gtgtaacttt aattttcctt atggtgtcag tacagggtaa attaaagctt agaaatacgg
     2341 ctcacaaata taagctaggt aaattctgtt tacatttttg ataacttggg ttcaataaac
     2401 cttgggaata tttaaatata ttttggatat aaattgaagc tcattcagaa tgaagcaaac
     2461 ttaggctgag aaaatgctaa ggagatccgg gtttatttaa aggacagaga ccctttatgg
     2521 tggccggact tcatggacac agatgtggtt tatctgcagg acctacctga attatgttta
     2581 gattaataac cagtatcgct gggtcagaag cttctaggca tgggcagata cggggccttc
     2641 agggtcctct tagaggaaca gagtggagag gaaatgccag ggttttgggg gtccctggca
     2701 ggaataggga ggccgctgtt atccgccttt gttgtggtag ctgggcactc gccactgtaa
     2761 cactgccgga gacttggccc tgtgcatctc ctcctagaga ggcctcccaa gttaattact
     2821 cctctgcgcc tccctcaagc atcctgatta gatcatgggc ctcgttttat ggacaggtat
     2881 taagtaggta ttaacactca aaagctttgt gtaactggca cacgctctgt aaagcggctc
     2941 cacgtgcttc tgagtaagac cccctgtatc tccactgtgg gcatctggtg gtactcaaga
     3001 ggccatgttg gggttcacct ctctggcttg ttcttggagt gtacctacaa tttcgtgggt
     3061 tggctcatga ggctccaaaa gcgataaacc ctattttggt agtttttaaa agagaaaact
     3121 accccaaaag ttacagagta atggggaaag ccagagcgta gggttagaga atcctgttaa
     3181 atttggctgt tgccagtacc ctgtgttagt cagccaccag gtatcatttc cggaaagagg
     3241 ttacgtgact cagaattgga ttgaaaaagc atctccgttg tgatttcctt tccttataag
     3301 agaattttct atttttagtc aaatctgcaa tgtctgggta tgagtgttgc atcggcagct
     3361 tccttggaca tgaacttcag ccttgcatca ctttttctca cacccacgtg acacacgtgc
     3421 atacgtttgt gtatactgtg caggcaaatg ctcactctcc ccgaaagaga attttgaagt
     3481 ggaaaggaga aaggcagagg aggaagaaaa ttcttttaat ttaaagcaca cattcaaaaa
     3541 aaaaaaaaaa aaaactccaa actttaaagt aatttaaacg agtcagccta aaactgtatt
     3601 gttttcctcc tcagcctgtg tggtgctgtg ttgctctaca tctggacact gcacacaccc
     3661 gtggttgtca gtccacaagc agtaatgaag cagtccctga gggcgccctt gttacagaca
     3721 tttggcactt cgtagatgcc agtggggtta tccatgcttg gtgacaaggc tcatgactta
     3781 tctagacagg gttccaaact gactcttgca agcggaagga aaaggcatcc tctagggaag
     3841 gagaacgcct ctctcgaagc ccagccaaga gaagcctcac ctccctggag gaagaagctt
     3901 aaatgtttgt agcccagtgg gattcctgat gccaggcaaa ctggttccaa ggcaggagcc
     3961 tttctttgcc catcgatggc tgctcctctg gcccagctgg ctcacgggaa acagtggtgc
     4021 aaacagagct caaactggag gtgctttcct gatcagtgct gcctggctgc tgttagccag
     4081 tcagttggag cagtccagca caggcttagg cagagagcct ttggtttggg ttgtttttcc
     4141 ctcagcgagc ttcaccttga ccagtactct gcctggctct cctttttcaa ggtggagaca
     4201 gctgggccat ctgaggtcga cttccctctc agtctcagat gcctcacaga ccccacggga
     4261 gtggtagggt tatggttctt gctatctatg aaccctgtgg acatgcacag gggccttttt
     4321 ctagaccccc tttctttcct agttaccgtg tgtcccctcc ctcctgatgc ctgtttccac
     4381 ttggcctcct tctaccctcc ctccagatgg agatgcaagc tagagtctgt ggagagacag
     4441 gaagcctagc atcgagtgat ggagagggag gtagctttgg agtcccaccc tctgccctgc
     4501 cttggctcag cactcagggg aagcagcact ttgattgtca gcattgcttg gggtcaaggg
     4561 ccacagccag caggcctaag caggtggctg tttggagcat gaggcgggga agaggtgtgt
     4621 ctgtcttctg caggttccct gggccggtcc aggtctgcat gccgcacttt catttgctcc
     4681 cgtaccgtgc tgcttcccga gggagccact tgtaacagca acacttcaag ctctctcctg
     4741 tgtgttttga caggaatgac tcgtgaccca ggctgtacat ggccgggggc tcactgctgt
     4801 cactgtgtcc aacaaacact tgctaagctg ttgctcgtgt ctgactgtct cccccaggtc
     4861 tggggccacg ccacctgtgt gccgtgagag cccaggaggg tggaagaaga gaaactaggg
     4921 tgtccttgag agctgaggtg gggaaaagca acacacaggt cagccagcct agtggcctgg
     4981 aggtcagcct ggctcttcca ctcagtcctg tgtcacagga gaagtccctg cctgccctcc
     5041 tcagtgccct tggtgaggat tacaagaggt cacggagggg accattgtac gtgtacagga
     5101 agaaagggtt acaaggcctc tgggtgtgtg tgggttgatg tctgtatgca ggtgagggca
     5161 ggcacaaggt aaggcaagag cccgtgactg ggcagtgaaa aaggaaggca ggctgaggat
     5221 cctagagaca ggggagagag tacggagagg gagaagaaaa atggaggaag agaaggacga
     5281 cccagatcct cgtggcttta aagagccaca ggtagctatg aatatcatac acgggatgga
     5341 taattacagg acagttcgtc cagtcttaag tgggcagctt taatcaatat cagttgactc
     5401 tgagttcttt gggcgttttg tgggttgaga atttactcat ataaatctga ttgataaatt
     5461 acaagcctct agagttttga tttttaccgg gttactggga attgtgacta taaccacagg
     5521 ggccagtggc tgggaaagtg agcagagcac acaacaggaa agcctcaagg tgggcggtca
     5581 ctgcctgggg ctagccatgg aggctgcgag accactgggg ccagcgctag cgtgggatgg
     5641 tgcccccatc tttattacac acaggtgtgt gcagcaggca gcagctgcac cagcgtccag
     5701 gcacctacag ggtggcatgt tatgctgctg tgatataaag gccccatgcc ttcaatccgg
     5761 ataggaaatg gctcctttta ttcctgggtc tgcctcatgg tctctgtgtg tggaacccct
     5821 gttatagtca gcatcagtat acctgctcca ggatccaagg acgctggttt tttagatgtc
     5881 tctgatctct acaaggaaag cccctatgcc ccaccatgtc cagcccagaa cagggcaact
     5941 actcttctgt ctcctcctct tgtcttgttt ttcaatacag ggtttctcta accctggttg
     6001 tcctggaact tgctctgtag accaggatgg ccttgaactc atggagaccc acctgctgct
     6061 gcctcccaag tgctgagatt aaaggcgggt gccaccagca cctggctggc actgccaccc
     6121 ttgcgttgct agggagatag atgtcagcag gacagctgtg gaaaggactt ggtcttcaca
     6181 tctgggatag tgggctagag aagtatctgc acatgtgaag tcatgggcag tcgggactca
     6241 gggccccagt cgtgttttac ttaaggtaaa gtgaaaccca ttcttttttc ccctttgagc
     6301 caagtttggt gcatacatgt gaccttgatc cttacatcga tgtgatcctt ggattgcttc
     6361 aggaatgtta tgaggtcttt gtataactct gcctctagga tttgattgga cttaatgggc
     6421 ttttctacta agaacataaa aactgaggct agtttcagca aaaccagtca cccctcacgg
     6481 tcgccctctg tacttgctgc ccacattatg agctgctttc cattgataac aaagatctga
     6541 gtacacgatg ggcacatcct aacccccaca tgctcgaact gaaacgtgtc aacgtgcgga
     6601 tctaatacag ctgtttatat actgtgtata ttaaaattaa aacgacatga ggtggcttaa
     6661 gaagtgtgta gagaataaat ctaaagtgtt ttactaa
//
