LOCUS       XM_039112228            9755 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus secretory blood group 1 (Sec1),
            transcript variant X10, mRNA.
ACCESSION   XM_039112228
VERSION     XM_039112228.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9755
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..9755
                     /gene="Sec1"
                     /gene_synonym="Ftc; RGD1562499"
                     /note="secretory blood group 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 4 ESTs, 9 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:308586"
                     /db_xref="RGD:1562499"
     CDS             810..1709
                     /gene="Sec1"
                     /gene_synonym="Ftc; RGD1562499"
                     /codon_start=1
                     /product="fucosyltransferase 10 isoform X2"
                     /protein_id="XP_038968156.1"
                     /db_xref="GeneID:308586"
                     /db_xref="RGD:1562499"
                     /translation="MFTINVRGRLGNQMGEYATLFALARMNGRLAFIPASMHSTLAPI
                     FRISLPVLHSDTARRIPWQKYHLNDWMEERYRHIPGHYVRFTGYPCSWTFYHHLRPEI
                     LKEFTLHDHVREEAQAFLRGLRVNGSQPSTFVGVHVRRGDYVHVMPKVWKGVVADRGY
                     LEKALDMFRARYSSPVFVVTSDDMSWCRKSIVASRGDVAFAGNGLQGSPAKDIALLMQ
                     CNHTVITLGTFGIWAAYLTGGDTVYLANFTQPSSPFHKVFKPEAAYLPEWVGIAADLE
                     QPNRGAPGHASARAPKSHQRTLL"
ORIGIN      
        1 tcagcttctc gggaactgga gattttgagc ctgtaccagc atgctaagct aagtccagag
       61 cattagtgta acagagtgag aagattccca ggactggggg cctcaggaga ggtccccagg
      121 gccacatttc tcttagctgt ggtcatactc atggatacag cctccctaac acccacgccc
      181 tgtccaagcc ctgcgtgaag cctgcccagc atcaggacag gcgtatagcc agaaaacaga
      241 gctgagggaa ggtcgtggtg agggagctgg aaacgaacaa tgccttggag ttgaagagca
      301 gacccctcag aggcccctgc cagccatgcc acccgagact gcgtgggaca ggagcactgt
      361 cgcccccagc aggcttgcag cctggtggtc ccggacaaac tggcctagaa ggatccaagc
      421 aggacctgac ttcaggagag ctcaagcctc tttgctctcc acagtaactc tggtggaggg
      481 tctctgtcag cagcctcagt ttggaaagga gccgcacttg accctgagta attgaaactc
      541 taggtcagac tgtgaatgat gaggggcttc tgtatcacac cagatttcca tgtcctccct
      601 gaagtaactg ttggatcata cagtggctgc agtcagctct ccaaggactc aaggccatct
      661 gcccacctct ctccaccttt tacctcttct ttgtgatctt cgtgttgtct accattttcc
      721 actgccaccg gcgcctcagt ctagtgcctg ccccctgggc ctcgtcagcc cttgtggtct
      781 tatccccaag acacctgccc cgggaaggca tgttcaccat caatgtcaga ggccggctgg
      841 ggaaccagat gggcgaatac gccacattgt ttgcactggc caggatgaac ggacggcttg
      901 cttttatccc cgcatccatg cacagcactc tagcgcccat cttcaggatc agcctcccgg
      961 tgttacacag tgacacagcc agaaggatac catggcagaa ataccatctc aacgactgga
     1021 tggaggagcg ttaccgccac attccgggac actatgtgcg cttcacggga tacccgtgct
     1081 cctggacctt ctaccaccac ctgcgcccag agatcctgaa ggagttcact ctgcatgacc
     1141 acgtgcggga ggaggcccag gccttcctgc gtggtctgcg ggtgaatggg agccagccga
     1201 gtacttttgt gggtgtccat gtgcgtcgag gggactatgt gcatgtcatg cccaaggtgt
     1261 ggaagggcgt ggtggctgac cggggttacc tggaaaaggc cctggatatg ttccgggcac
     1321 gctattcatc tccagtcttc gtggtcacca gtgatgacat gtcctggtgc cggaagagca
     1381 tcgttgcttc ccgaggggac gtggcatttg ctggcaatgg ccttcaagga tcgcctgcca
     1441 aggacattgc attactcatg cagtgcaacc ataccgtcat caccttgggt acctttggta
     1501 tctgggctgc ctatctcaca ggtggggata ctgtttacct ggctaacttt acccagccca
     1561 gctccccttt ccataaggtt ttcaagccag aagcagctta tctgcctgag tgggtgggca
     1621 ttgctgctga tctggaacag ccaaacagag gagcccctgg ccatgcctca gcaagagccc
     1681 ccaagagtca ccagaggacc ttgctgtagt gcacatgctc agaggggcgg tgggggggag
     1741 ggtatgttgt tgtcgtgctc gtgctcgtgc tcgggacctc acagggattc ccagttctgt
     1801 tttgcatgct tctcagctga gtgattgcag gtcaatgatg tcacctcact gccttcctga
     1861 aactctgagc acagcctgga cttagctcag cagcaacagc acaggtactt tgagctcctc
     1921 catgcccaca ctgttagcca tcataggcct aacattggct gcatctggag tgctgtgtca
     1981 cggaggccag tgtgtagtta gggtttctgc ggctctgata aaacaccatg gccatggaca
     2041 agttgaggag tgaagagcct acttcagctc atacttccac atcacagcac atcactgagg
     2101 gaagtcacgg caggaacctg gagacaggag ctggtacagg ggctatggag ggtgctgctt
     2161 actggtttgc tctttgtgcc ttgctcagcc ggctgcctca taccacccag agggtgtagg
     2221 aggacatttc caggacactt tcctggagca caaagcctct gaggctatct cagccctggc
     2281 tggggacttg gttactgttc cctgctctgg tctcctcagg tgtgatggga cgcagaggct
     2341 ctttaggagg tgagcagatg gcagtgggag ccgtgagatg aagggcgccc tgcccagctt
     2401 cgtgtttgct cggccttgct tgaacaaaga tacaaacggc cttttctttg caaaagcccc
     2461 aggaaaggct ggtaatatgc cagtggcaat aaatggcaca tccatcagca aatatttact
     2521 cagctcttga gtgggttgaa gatgccccag tccctcaaca gtggcgagga agaggaagcc
     2581 aagtaagcag acactcactg cctaggctaa aggtggctta gcccatagcg tctgctcctc
     2641 agactcagat atgaaataat gtcaccatga ctgtaactgg ttaggatggg gaggtccttg
     2701 acacattaga gctagtgact acagacgcac gcacacaaaa ggtgacataa tggcagagtg
     2761 gagactgagt tctaagagta ggcaatgttc tgcagcgctg actaccccat tggccttgcc
     2821 ccatcccatc acacaggcac taagggaaaa cacagtggag tacacaccac atgaatgaca
     2881 ggcgcacaga gcaaacacct attgtgctct ggctgacagg ctgggtacgt ctgccatatg
     2941 tttagctctt agaggccttg gcttccattc tcagtaatac gcgcgcgcac acacacacac
     3001 acacacacac acacacacac acacacacac acaaagttaa tttcctgttg accttggcag
     3061 aagtttttca atcagtgtga gtgtcaagtg ataggggaat attggggtga gtcaggcagg
     3121 gtgtgatcct cactataccg ggaagcagtc agcgcctgac aagaaatgcc aagaaggacc
     3181 caagaacttt tgcttatgtg taagtgacct caatctttgt gcccatgcac tcaggattgt
     3241 gagccttctg gaagaaagat gtccacctct cactgcatct gagtatcatg taggtgagaa
     3301 agtacctgat ggctcagccc aagtgagctc aatcagaagt aggctcatga ctgaacagcc
     3361 ctctccaccc tcctcagcca gagagcagag gctgtggctg gatcgatcct gagttgtgct
     3421 gcgcagtaca caagctctgc ataccagctg tcacgtccgg ctgcaccctt cttagctgtg
     3481 tgcttctggg aaaatggctg cactgaggag catggatatg acccaggcaa agagacatga
     3541 attagatgct ccagtagagc ggattcatag gggcagaaag gtctgtgggc tttgagcagg
     3601 tcagggagga gttgtttctt gggcacaggg ttttggtttt tataagacgg ttctagaggg
     3661 ctggttggac cacggtgtga acaccacccc cagtgaatgg cacgcttaaa aaatgttcca
     3721 gaacaccaga cctggtggaa catgcctaca ctctcaggaa ctggttagaa gaagcgggaa
     3781 gatggtcaag aattcaggga ctaaaaagtg agacccttgg gccagtgagg cgactcagtg
     3841 gaaaagatgc ttgccactaa gcttatcaac ctggggtcca ttcgacaaca gaactggggc
     3901 tttttcctat ggctttcact cacaccttgt gaggcatgca catgcacatg tgcacacaca
     3961 cacacacaca cacacacaca cacacacaca cacacacaca gccgtgagac tggttcaaga
     4021 aaagaatggc taagatttgc aacaatcgga aactacagac tgggcccaga gtttgactcc
     4081 cacttcactg ttactgactt aggcaggtaa caaatctctc tgggcctcag cttccttctc
     4141 tgtttggtgt tagaattttt tagtgctttt attcaaggta cagtgtaggt atgaaacagt
     4201 tctggagaaa gaattgcagg actatggtct ctggagaagt ctccagaggc accaggagca
     4261 ggggaacagg gtatcgagag tgaacaagtt agctttccct ccctccctgc ctctgtgttc
     4321 tcagcttctc agtggccttc agtggcttcc ctgccttgat gcctagagaa ggcacaggca
     4381 gtgagcagct cacatcactg gggtctgggg tgaaggaatg gcgaacacat ttccaaaagg
     4441 aaactagacc atgacttcca tgtctgtgcc aggttggtgc ttctaggctg cgctggggac
     4501 gcagtgggtt cctaggagcc agaatctgga gggaggagcc agatttggga acagagcttt
     4561 cagcaggaag atgccaaggg tcaacctcgt ggaatcaaag ctaggcaggg cctgagactt
     4621 tgagagccct aggaaggctc ctgggggcca caggagccat ggggatgcat gatagaggga
     4681 ggacagggaa ggggcttggg tccaggtggg agacgaggcc aggagatccc aggtgggacc
     4741 ggggacagat caggtgataa aggacacgct gttggggcca gactcaaatt tacccagacc
     4801 cagcaataac tcagggtggc ttagaaccaa ggctttcatc tccaggagct ccaataccct
     4861 tctctggctt tggcaggcat cttcacactc aagtgcgcag acccacacat gtacagacac
     4921 ctaaaatcta taaagttacc tttatcatac acatttttcc tgagataaaa ctcacatatt
     4981 ataaagttca ttaccttgaa atgctaagta cagccatttc tattacattc atattaggca
     5041 aacattattt tcaagttcca gaactttgcc attttacaca tcccaaggaa acctccaggt
     5101 tttccctccc tgcccctctc tgcccttgca ccgagatatg tttctatgga tttgcctggc
     5161 tgggatttct gcttcagtgg aatccgacaa tagcatcttt ttgtgtcaga ctctgttcca
     5221 aggttcatca cccaggagtg catgtgtttc acgtccttgt attgcacagt atccgatggt
     5281 catgtgcaaa accacagtac cacccacact cattattacc aggtcattac acatagaagt
     5341 ggaatgggta tggtgctgcg tcctgggaag cagagtcatc aggctccccc attcaacaaa
     5401 gacaagagaa agcactcaag ctgggcactg tgtttcctaa atcagaggtc cccggcgctg
     5461 ctcccatgac acccagcaca cagtaaatgc tattgagtga ccagaggagc cactcaggga
     5521 agcagaggct gaggacagtg ggacctgtgg gcagagagag tgacagagct gtccctcccc
     5581 ttctgtgagc ctttgtctgg ggcctgagaa cagagcccca gctgggacac ttggcatcag
     5641 cattgtggtg ttggaagctg tggtttaatc ataaccaaga tctacatgaa atgttacacg
     5701 gcccaatctg atcccagcac tttagagaca ggcaggagga ctccaagtct aaggtcagcc
     5761 tggactccct aaggtgatta cagaggacta cgctattaca tatataatgt gatatgtatg
     5821 taatacatat gggatatgta tgtgtctgag atgtacatat attcatatcc caaaccaagg
     5881 agtctggggt ggttccgtgc cctggttagt atctgcaccc tggttattgt ctctctcaca
     5941 ccaaggcagc tccaggttgt ttagctctgc cctcaggctc ttttttgttt tcatgttttt
     6001 ttaagagaca gggtttctct gtgtagccct ggctgtctaa gacttgttct gtataccaag
     6061 ctgttcttga gctcagagtt ctgcctctga gagctgggat taaatgcatg ggccatgcct
     6121 ggcatgtcct tgggctcctt aggtactctg tgcagctctt gtccctccca tgttctctga
     6181 tccgaggtct gtggttttgg gtgagccaca cagggtgtgc tcctaaagtc agacgtggct
     6241 cacaggttcc gtgtctgtgg agaagcattt cttggtgttt accagctcag ccctggtttg
     6301 aacacagaag aacaaaggag ttggacaaga actctagacc agagcattgg cccatggggc
     6361 acagtgggtc attttgtttt cataacccta accaagcatt ctggtggatg gaagcaggat
     6421 gcccaacacc acaccatagg cacatatttt tctcaaccaa cttttttttt tcttttctat
     6481 tttttggagc tggggaccga acccagggcc ttgcgcttgc taggcaagcg ctctaccact
     6541 gagctaaatc cccaacccct caaccaactt ttaataaggg ttcaacctcc cctctagcct
     6601 accacctacc aaaaggtagt ggaaaagaac ggttattagg atatggggga agtggacctg
     6661 tttagaaata gttatttggg gacaattcct gtcttcgtta tttgtgtagg gaagttgtga
     6721 tactaatgtc ctgttcctca attggttctt gatttgtcag taaagaaact cgggggccaa
     6781 ttgctgggtg gaaggtacag gtgggacttc caggtccgag gaagaaaagg cagatgcaag
     6841 gaaggaggga ggagtttctg ccatgcttcg gagaaagaag aatgcagcaa tggtgtgaag
     6901 cctcaggggg agctggagcc tgaggcctcc actacagggg gctggccaag gatgtttggc
     6961 agaggctagg tggggctagc cactgaagtt tagggcaagt ggagagacag aggtaataga
     7021 ttgttaagag gcgcccaggc gggagatagt aacacccagc aattgtgcca agaaggcaca
     7081 ttgtaaagga attaactgtg tctttaatcc atgaattcca ggggctcagg tgggtgggca
     7141 ctcctggggc taaagatggg tagaacaaaa ggaaagacgg gaggggctgg gctgctaaca
     7201 aggccaatcc aggcaaaggt tgtagcacat agaactacac gcaacagttg ttctcagttc
     7261 agtccactag caaaggccga acacaaatca gcagcttcag ttcagcccac tcggcaggca
     7321 ccacacagga accagcaagg cagttcaatc cagaagaaac cctgaggctc accaactgac
     7381 ccaagtctac agaagatgca agaagccgca ggaacctcac aggaagttct ttggtgagtt
     7441 tctctccatg gagtcaccac aagcggagct cagcactgca gggtaaggcg aaccatgcga
     7501 agtcaacgat gactagtgag gcagagcaag gcaaccccaa gctccagctc ccgctgtctg
     7561 tgaggtcata attgcatccc ttccgaatat catgcatcct aagcatcctc tcacatgcgt
     7621 ctgcttcagc caaacatcgt tcaacataac tgacttgcta aagaaatcag atgttttcag
     7681 ttcattacac agtgaagaag agttccgaac ctcgatggct ttgcatttgg gagtcttgtt
     7741 tgttttcttc tgcacagccc aggcaggcct tcaactccca gcaatcctgc ccctgcctcc
     7801 tcactgggat tgcagacaaa accgccacac ctggctttcc ccgtgccttt gagcagtcgg
     7861 tgtatggcag cacaaggcaa accctgctgg tctctcagcc cagaatcagg tttgcacacc
     7921 tgctaagtac ctgtttctct tctccatgac gtgaatggat gagggaaaat ggccttttgt
     7981 acttccactg cctcacattc tggacttggc agatgccatg atgtccactc acccttccgt
     8041 tgttccaaac tgaggagcca gggtggaaag gcagctctga tgggaacttt ttatgtttgg
     8101 gttttatttg tttgtttgca atgtggtggc atggacccga ggcctctggc attgtaggca
     8161 ggcactttgc aacggagcca tgcctgatgc cctatctttt aggtattact gttgtacgtt
     8221 tacttttgag attgttgtga acgcatgtgt acgtgttcct gtttgtgtgt gcacaggcac
     8281 atatggagcc agagcgatta atgtttagtg tcagttgtca actgtgttgg cccaagttca
     8341 gagtaatttt ggaagactgc acctccattg ggaaaatgtc ccaccagatt agcctgtgtg
     8401 caaacctgtg gtaaattttc ttgatgtaag agggcccaca tccctggggt ggtgctgaca
     8461 cttctgggca gtcgggcctg gagggcataa gaaagtaggc tgagcaagcc atagggagca
     8521 agacagtcag cagcattcct ccatggcctc tgcttccagg gtcctgcctt gagtttctgc
     8581 ccaaactgcc ctggataatg aactataagc tataaagtga aatacactct ttcctcacca
     8641 gctcgctttt ggtcatggta gttttcatag taatggctag tgtcgggagt catctaggaa
     8701 acacaagtga cattctggag atgacacatt gtatcgaatt gtctggaatg aataattctg
     8761 aattgtaaag ctttcagaaa tctcaactca ggattgatta ttgcagctaa tatgcctttc
     8821 ctgtccttat aaaattaatc taacgatccc tgggcatatt gggcatattt tctgcagatc
     8881 accaaagatg tactgtttgt agtgatgcta tatagacaga tgaattctta attcctacta
     8941 attactctgt agaatttcta aatttatact agtaattatt gaatccttta tagaaagggc
     9001 agcgattaag gccccgcaaa acttcatgtg tctcaagcta attgcactag gatagaaatc
     9061 gagagtgtaa tggatttaca atcaaacatc cctttaggca aactgtgaag ccattatctg
     9121 gtaactaaag tttgtaaaag ggaatgaaaa ttttattgta ggtccaagga cagaagataa
     9181 aatattgttt atctctacaa aacttaaata ctaatgagaa acaaggattt gcctcatgaa
     9241 aaaaaaatac ttagacttaa gagttattgt tttaaacttt tttttttcgg agctggggac
     9301 cgaacccagg gccttgtgct tgttaggcag gtgctctacc actgagctaa atccccaacc
     9361 cctgttttaa acttttaata aacccgtgga gctggtggca gctaaggaag tttagtgata
     9421 accagtctta ctgggaacac gtgagcatct ctgttgaatt ccttattcaa tttatgattt
     9481 aatttatgtc tgaacttgtt acgaactttt gaaaaaaggt gcttagatta ccatgtgatc
     9541 atgtatcctg aggaaatacg agaaccagga acaatgacaa taagaaagca gagagagcag
     9601 aggaagagcg ggcaaggttt ttcttaccac gagacaggat ttctcttagt agcaggtttc
     9661 tttttactga caagaacagg gctttttcat actcaataaa aagctggact tttttttcct
     9721 ttctctgagt aataaaggtt ggagcttagt gttca
//
