LOCUS       XM_017589141            9567 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus secretory blood group 1 (Sec1),
            transcript variant X4, mRNA.
ACCESSION   XM_017589141
VERSION     XM_017589141.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017589141.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017589141.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9567
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..9567
                     /gene="Sec1"
                     /gene_synonym="Ftc; RGD1562499"
                     /note="secretory blood group 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 4 ESTs, 25 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     5 samples with support for all annotated introns"
                     /db_xref="GeneID:308586"
                     /db_xref="RGD:1562499"
     CDS             352..1521
                     /gene="Sec1"
                     /gene_synonym="Ftc; RGD1562499"
                     /codon_start=1
                     /product="fucosyltransferase 10 isoform X1"
                     /protein_id="XP_017444630.1"
                     /db_xref="GeneID:308586"
                     /db_xref="RGD:1562499"
                     /translation="MPPETAWDRSTVAPSRLAAWWSRTNWPRRIQAALQGLKAICPPL
                     STFYLFFVIFVLSTIFHCHRRLSLVPAPWASSALVVLSPRHLPREGMFTINVRGRLGN
                     QMGEYATLFALARMNGRLAFIPASMHSTLAPIFRISLPVLHSDTARRIPWQKYHLNDW
                     MEERYRHIPGHYVRFTGYPCSWTFYHHLRPEILKEFTLHDHVREEAQAFLRGLRVNGS
                     QPSTFVGVHVRRGDYVHVMPKVWKGVVADRGYLEKALDMFRARYSSPVFVVTSDDMSW
                     CRKSIVASRGDVAFAGNGLQGSPAKDIALLMQCNHTVITLGTFGIWAAYLTGGDTVYL
                     ANFTQPSSPFHKVFKPEAAYLPEWVGIAADLEQPNRGAPGHASARAPKSHQRTLL"
ORIGIN      
        1 tcagcttctc gggaactgga gattttgagc ctgtaccagc atgctaagct aagtccagag
       61 cattagtgta acagagtgag aagattccca ggactggggg cctcaggaga ggtccccagg
      121 gccacatttc tcttagctgt ggtcatactc atggatacag cctccctaac acccacgccc
      181 tgtccaagcc ctgcgtgaag cctgcccagc atcaggacag gcgtatagcc agaaaacaga
      241 gctgagggaa ggtcgtggtg agggagctgg aaacgaacaa tgccttggag ttgaagagca
      301 gacccctcag ccagcagcag ccatgccttc ccacagaggc ccctgccagc catgccaccc
      361 gagactgcgt gggacaggag cactgtcgcc cccagcaggc ttgcagcctg gtggtcccgg
      421 acaaactggc ctagaaggat ccaagcagct ctccaaggac tcaaggccat ctgcccacct
      481 ctctccacct tttacctctt ctttgtgatc ttcgtgttgt ctaccatttt ccactgccac
      541 cggcgcctca gtctagtgcc tgccccctgg gcctcgtcag cccttgtggt cttatcccca
      601 agacacctgc cccgggaagg catgttcacc atcaatgtca gaggccggct ggggaaccag
      661 atgggcgaat acgccacatt gtttgcactg gccaggatga acggacggct tgcttttatc
      721 cccgcatcca tgcacagcac tctagcgccc atcttcagga tcagcctccc ggtgttacac
      781 agtgacacag ccagaaggat accatggcag aaataccatc tcaacgactg gatggaggag
      841 cgttaccgcc acattccggg acactatgtg cgcttcacgg gatacccgtg ctcctggacc
      901 ttctaccacc acctgcgccc agagatcctg aaggagttca ctctgcatga ccacgtgcgg
      961 gaggaggccc aggccttcct gcgtggtctg cgggtgaatg ggagccagcc gagtactttt
     1021 gtgggtgtcc atgtgcgtcg aggggactat gtgcatgtca tgcccaaggt gtggaagggc
     1081 gtggtggctg accggggtta cctggaaaag gccctggata tgttccgggc acgctattca
     1141 tctccagtct tcgtggtcac cagtgatgac atgtcctggt gccggaagag catcgttgct
     1201 tcccgagggg acgtggcatt tgctggcaat ggccttcaag gatcgcctgc caaggacatt
     1261 gcattactca tgcagtgcaa ccataccgtc atcaccttgg gtacctttgg tatctgggct
     1321 gcctatctca caggtgggga tactgtttac ctggctaact ttacccagcc cagctcccct
     1381 ttccataagg ttttcaagcc agaagcagct tatctgcctg agtgggtggg cattgctgct
     1441 gatctggaac agccaaacag aggagcccct ggccatgcct cagcaagagc ccccaagagt
     1501 caccagagga ccttgctgta gtgcacatgc tcagaggggc ggtggggggg agggtatgtt
     1561 gttgtcgtgc tcgtgctcgt gctcgggacc tcacagggat tcccagttct gttttgcatg
     1621 cttctcagct gagtgattgc aggtcaatga tgtcacctca ctgccttcct gaaactctga
     1681 gcacagcctg gacttagctc agcagcaaca gcacaggtac tttgagctcc tccatgccca
     1741 cactgttagc catcataggc ctaacattgg ctgcatctgg agtgctgtgt cacggaggcc
     1801 agtgtgtagt tagggtttct gcggctctga taaaacacca tggccatgga caagttgagg
     1861 agtgaagagc ctacttcagc tcatacttcc acatcacagc acatcactga gggaagtcac
     1921 ggcaggaacc tggagacagg agctggtaca ggggctatgg agggtgctgc ttactggttt
     1981 gctctttgtg ccttgctcag ccggctgcct cataccaccc agagggtgta ggaggacatt
     2041 tccaggacac tttcctggag cacaaagcct ctgaggctat ctcagccctg gctggggact
     2101 tggttactgt tccctgctct ggtctcctca ggtgtgatgg gacgcagagg ctctttagga
     2161 ggtgagcaga tggcagtggg agccgtgaga tgaagggcgc cctgcccagc ttcgtgtttg
     2221 ctcggccttg cttgaacaaa gatacaaacg gccttttctt tgcaaaagcc ccaggaaagg
     2281 ctggtaatat gccagtggca ataaatggca catccatcag caaatattta ctcagctctt
     2341 gagtgggttg aagatgcccc agtccctcaa cagtggcgag gaagaggaag ccaagtaagc
     2401 agacactcac tgcctaggct aaaggtggct tagcccatag cgtctgctcc tcagactcag
     2461 atatgaaata atgtcaccat gactgtaact ggttaggatg gggaggtcct tgacacatta
     2521 gagctagtga ctacagacgc acgcacacaa aaggtgacat aatggcagag tggagactga
     2581 gttctaagag taggcaatgt tctgcagcgc tgactacccc attggccttg ccccatccca
     2641 tcacacaggc actaagggaa aacacagtgg agtacacacc acatgaatga caggcgcaca
     2701 gagcaaacac ctattgtgct ctggctgaca ggctgggtac gtctgccata tgtttagctc
     2761 ttagaggcct tggcttccat tctcagtaat acgcgcgcgc acacacacac acacacacac
     2821 acacacacac acacacacac acacaaagtt aatttcctgt tgaccttggc agaagttttt
     2881 caatcagtgt gagtgtcaag tgatagggga atattggggt gagtcaggca gggtgtgatc
     2941 ctcactatac cgggaagcag tcagcgcctg acaagaaatg ccaagaagga cccaagaact
     3001 tttgcttatg tgtaagtgac ctcaatcttt gtgcccatgc actcaggatt gtgagccttc
     3061 tggaagaaag atgtccacct ctcactgcat ctgagtatca tgtaggtgag aaagtacctg
     3121 atggctcagc ccaagtgagc tcaatcagaa gtaggctcat gactgaacag ccctctccac
     3181 cctcctcagc cagagagcag aggctgtggc tggatcgatc ctgagttgtg ctgcgcagta
     3241 cacaagctct gcataccagc tgtcacgtcc ggctgcaccc ttcttagctg tgtgcttctg
     3301 ggaaaatggc tgcactgagg agcatggata tgacccaggc aaagagacat gaattagatg
     3361 ctccagtaga gcggattcat aggggcagaa aggtctgtgg gctttgagca ggtcagggag
     3421 gagttgtttc ttgggcacag ggttttggtt tttataagac ggttctagag ggctggttgg
     3481 accacggtgt gaacaccacc cccagtgaat ggcacgctta aaaaatgttc cagaacacca
     3541 gacctggtgg aacatgccta cactctcagg aactggttag aagaagcggg aagatggtca
     3601 agaattcagg gactaaaaag tgagaccctt gggccagtga ggcgactcag tggaaaagat
     3661 gcttgccact aagcttatca acctggggtc cattcgacaa cagaactggg gctttttcct
     3721 atggctttca ctcacacctt gtgaggcatg cacatgcaca tgtgcacaca cacacacaca
     3781 cacacacaca cacacacaca cacacacaca cagccgtgag actggttcaa gaaaagaatg
     3841 gctaagattt gcaacaatcg gaaactacag actgggccca gagtttgact cccacttcac
     3901 tgttactgac ttaggcaggt aacaaatctc tctgggcctc agcttccttc tctgtttggt
     3961 gttagaattt tttagtgctt ttattcaagg tacagtgtag gtatgaaaca gttctggaga
     4021 aagaattgca ggactatggt ctctggagaa gtctccagag gcaccaggag caggggaaca
     4081 gggtatcgag agtgaacaag ttagctttcc ctccctccct gcctctgtgt tctcagcttc
     4141 tcagtggcct tcagtggctt ccctgccttg atgcctagag aaggcacagg cagtgagcag
     4201 ctcacatcac tggggtctgg ggtgaaggaa tggcgaacac atttccaaaa ggaaactaga
     4261 ccatgacttc catgtctgtg ccaggttggt gcttctaggc tgcgctgggg acgcagtggg
     4321 ttcctaggag ccagaatctg gagggaggag ccagatttgg gaacagagct ttcagcagga
     4381 agatgccaag ggtcaacctc gtggaatcaa agctaggcag ggcctgagac tttgagagcc
     4441 ctaggaaggc tcctgggggc cacaggagcc atggggatgc atgatagagg gaggacaggg
     4501 aaggggcttg ggtccaggtg ggagacgagg ccaggagatc ccaggtggga ccggggacag
     4561 atcaggtgat aaaggacacg ctgttggggc cagactcaaa tttacccaga cccagcaata
     4621 actcagggtg gcttagaacc aaggctttca tctccaggag ctccaatacc cttctctggc
     4681 tttggcaggc atcttcacac tcaagtgcgc agacccacac atgtacagac acctaaaatc
     4741 tataaagtta cctttatcat acacattttt cctgagataa aactcacata ttataaagtt
     4801 cattaccttg aaatgctaag tacagccatt tctattacat tcatattagg caaacattat
     4861 tttcaagttc cagaactttg ccattttaca catcccaagg aaacctccag gttttccctc
     4921 cctgcccctc tctgcccttg caccgagata tgtttctatg gatttgcctg gctgggattt
     4981 ctgcttcagt ggaatccgac aatagcatct ttttgtgtca gactctgttc caaggttcat
     5041 cacccaggag tgcatgtgtt tcacgtcctt gtattgcaca gtatccgatg gtcatgtgca
     5101 aaaccacagt accacccaca ctcattatta ccaggtcatt acacatagaa gtggaatggg
     5161 tatggtgctg cgtcctggga agcagagtca tcaggctccc ccattcaaca aagacaagag
     5221 aaagcactca agctgggcac tgtgtttcct aaatcagagg tccccggcgc tgctcccatg
     5281 acacccagca cacagtaaat gctattgagt gaccagagga gccactcagg gaagcagagg
     5341 ctgaggacag tgggacctgt gggcagagag agtgacagag ctgtccctcc ccttctgtga
     5401 gcctttgtct ggggcctgag aacagagccc cagctgggac acttggcatc agcattgtgg
     5461 tgttggaagc tgtggtttaa tcataaccaa gatctacatg aaatgttaca cggcccaatc
     5521 tgatcccagc actttagaga caggcaggag gactccaagt ctaaggtcag cctggactcc
     5581 ctaaggtgat tacagaggac tacgctatta catatataat gtgatatgta tgtaatacat
     5641 atgggatatg tatgtgtctg agatgtacat atattcatat cccaaaccaa ggagtctggg
     5701 gtggttccgt gccctggtta gtatctgcac cctggttatt gtctctctca caccaaggca
     5761 gctccaggtt gtttagctct gccctcaggc tcttttttgt tttcatgttt ttttaagaga
     5821 cagggtttct ctgtgtagcc ctggctgtct aagacttgtt ctgtatacca agctgttctt
     5881 gagctcagag ttctgcctct gagagctggg attaaatgca tgggccatgc ctggcatgtc
     5941 cttgggctcc ttaggtactc tgtgcagctc ttgtccctcc catgttctct gatccgaggt
     6001 ctgtggtttt gggtgagcca cacagggtgt gctcctaaag tcagacgtgg ctcacaggtt
     6061 ccgtgtctgt ggagaagcat ttcttggtgt ttaccagctc agccctggtt tgaacacaga
     6121 agaacaaagg agttggacaa gaactctaga ccagagcatt ggcccatggg gcacagtggg
     6181 tcattttgtt ttcataaccc taaccaagca ttctggtgga tggaagcagg atgcccaaca
     6241 ccacaccata ggcacatatt tttctcaacc aacttttttt tttcttttct attttttgga
     6301 gctggggacc gaacccaggg ccttgcgctt gctaggcaag cgctctacca ctgagctaaa
     6361 tccccaaccc ctcaaccaac ttttaataag ggttcaacct cccctctagc ctaccaccta
     6421 ccaaaaggta gtggaaaaga acggttatta ggatatgggg gaagtggacc tgtttagaaa
     6481 tagttatttg gggacaattc ctgtcttcgt tatttgtgta gggaagttgt gatactaatg
     6541 tcctgttcct caattggttc ttgatttgtc agtaaagaaa ctcgggggcc aattgctggg
     6601 tggaaggtac aggtgggact tccaggtccg aggaagaaaa ggcagatgca aggaaggagg
     6661 gaggagtttc tgccatgctt cggagaaaga agaatgcagc aatggtgtga agcctcaggg
     6721 ggagctggag cctgaggcct ccactacagg gggctggcca aggatgtttg gcagaggcta
     6781 ggtggggcta gccactgaag tttagggcaa gtggagagac agaggtaata gattgttaag
     6841 aggcgcccag gcgggagata gtaacaccca gcaattgtgc caagaaggca cattgtaaag
     6901 gaattaactg tgtctttaat ccatgaattc caggggctca ggtgggtggg cactcctggg
     6961 gctaaagatg ggtagaacaa aaggaaagac gggaggggct gggctgctaa caaggccaat
     7021 ccaggcaaag gttgtagcac atagaactac acgcaacagt tgttctcagt tcagtccact
     7081 agcaaaggcc gaacacaaat cagcagcttc agttcagccc actcggcagg caccacacag
     7141 gaaccagcaa ggcagttcaa tccagaagaa accctgaggc tcaccaactg acccaagtct
     7201 acagaagatg caagaagccg caggaacctc acaggaagtt ctttggtgag tttctctcca
     7261 tggagtcacc acaagcggag ctcagcactg cagggtaagg cgaaccatgc gaagtcaacg
     7321 atgactagtg aggcagagca aggcaacccc aagctccagc tcccgctgtc tgtgaggtca
     7381 taattgcatc ccttccgaat atcatgcatc ctaagcatcc tctcacatgc gtctgcttca
     7441 gccaaacatc gttcaacata actgacttgc taaagaaatc agatgttttc agttcattac
     7501 acagtgaaga agagttccga acctcgatgg ctttgcattt gggagtcttg tttgttttct
     7561 tctgcacagc ccaggcaggc cttcaactcc cagcaatcct gcccctgcct cctcactggg
     7621 attgcagaca aaaccgccac acctggcttt ccccgtgcct ttgagcagtc ggtgtatggc
     7681 agcacaaggc aaaccctgct ggtctctcag cccagaatca ggtttgcaca cctgctaagt
     7741 acctgtttct cttctccatg acgtgaatgg atgagggaaa atggcctttt gtacttccac
     7801 tgcctcacat tctggacttg gcagatgcca tgatgtccac tcacccttcc gttgttccaa
     7861 actgaggagc cagggtggaa aggcagctct gatgggaact ttttatgttt gggttttatt
     7921 tgtttgtttg caatgtggtg gcatggaccc gaggcctctg gcattgtagg caggcacttt
     7981 gcaacggagc catgcctgat gccctatctt ttaggtatta ctgttgtacg tttacttttg
     8041 agattgttgt gaacgcatgt gtacgtgttc ctgtttgtgt gtgcacaggc acatatggag
     8101 ccagagcgat taatgtttag tgtcagttgt caactgtgtt ggcccaagtt cagagtaatt
     8161 ttggaagact gcacctccat tgggaaaatg tcccaccaga ttagcctgtg tgcaaacctg
     8221 tggtaaattt tcttgatgta agagggccca catccctggg gtggtgctga cacttctggg
     8281 cagtcgggcc tggagggcat aagaaagtag gctgagcaag ccatagggag caagacagtc
     8341 agcagcattc ctccatggcc tctgcttcca gggtcctgcc ttgagtttct gcccaaactg
     8401 ccctggataa tgaactataa gctataaagt gaaatacact ctttcctcac cagctcgctt
     8461 ttggtcatgg tagttttcat agtaatggct agtgtcggga gtcatctagg aaacacaagt
     8521 gacattctgg agatgacaca ttgtatcgaa ttgtctggaa tgaataattc tgaattgtaa
     8581 agctttcaga aatctcaact caggattgat tattgcagct aatatgcctt tcctgtcctt
     8641 ataaaattaa tctaacgatc cctgggcata ttgggcatat tttctgcaga tcaccaaaga
     8701 tgtactgttt gtagtgatgc tatatagaca gatgaattct taattcctac taattactct
     8761 gtagaatttc taaatttata ctagtaatta ttgaatcctt tatagaaagg gcagcgatta
     8821 aggccccgca aaacttcatg tgtctcaagc taattgcact aggatagaaa tcgagagtgt
     8881 aatggattta caatcaaaca tccctttagg caaactgtga agccattatc tggtaactaa
     8941 agtttgtaaa agggaatgaa aattttattg taggtccaag gacagaagat aaaatattgt
     9001 ttatctctac aaaacttaaa tactaatgag aaacaaggat ttgcctcatg aaaaaaaaat
     9061 acttagactt aagagttatt gttttaaact tttttttttc ggagctgggg accgaaccca
     9121 gggccttgtg cttgttaggc aggtgctcta ccactgagct aaatccccaa cccctgtttt
     9181 aaacttttaa taaacccgtg gagctggtgg cagctaagga agtttagtga taaccagtct
     9241 tactgggaac acgtgagcat ctctgttgaa ttccttattc aatttatgat ttaatttatg
     9301 tctgaacttg ttacgaactt ttgaaaaaag gtgcttagat taccatgtga tcatgtatcc
     9361 tgaggaaata cgagaaccag gaacaatgac aataagaaag cagagagagc agaggaagag
     9421 cgggcaaggt ttttcttacc acgagacagg atttctctta gtagcaggtt tctttttact
     9481 gacaagaaca gggctttttc atactcaata aaaagctgga cttttttttc ctttctctga
     9541 gtaataaagg ttggagctta gtgttca
//
