LOCUS       XM_039101193            3102 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus short chain dehydrogenase/reductase
            family 42E, member 2 (Sdr42e2), mRNA.
ACCESSION   XM_039101193
VERSION     XM_039101193.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101193.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3102
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3102
                     /gene="Sdr42e2"
                     /note="short chain dehydrogenase/reductase family 42E,
                     member 2; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 ESTs, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100910280"
                     /db_xref="RGD:6504299"
     CDS             521..2383
                     /gene="Sdr42e2"
                     /codon_start=1
                     /product="putative short-chain dehydrogenase/reductase
                     family 42E member 2"
                     /protein_id="XP_038957121.1"
                     /db_xref="GeneID:100910280"
                     /db_xref="RGD:6504299"
                     /translation="MKTNPAGAPLETCQTAGQGEKGYPVCQACGGASSLGSASESGSG
                     LRPGPGVALDSGLGPGAIPGPGPGPGLGPSAVPGSGPQPSSVSVTGLRPGTTSGPNAS
                     LGPGLGTGSLPGPGARSGLRPGCDSVPAPAPQPGSGPVPQSGSGPVPQSGSGPVPQSG
                     AGSVSQPGAGSVPQPVSELVTSPGAAPLPGLGLGPGTRRGSGTGSNPGESVRATVPAL
                     QQKTEAKHTQAPRQKVLVTGGGGYLGFSLGSSLAKKGASVILLDLRRPQWPLPSGTEF
                     IQADVRDEEALYQAFQGVDCVFHVASYGMSGAEKLQKREIESINVGGTKLVINVCVRR
                     RVPRLVYTSTVNVTFGGKPIEQGNEDSIPYFPLDKHMDHYSRTKAIADQLILMANGTP
                     LLGGGTLRTCVLRPPGIYGPEEQKHLPRVASHIKKRLFMFRFGDRRTHMNWVHVQNLV
                     QAHMRAAEGLTLAKGYVASGQAYYIHDGESVNLFEWMAPLFEKLGYSQPWIQVPTSCV
                     YLTAAVMEFLHLALRPICTISPLLTRSEVLSMTVTHTFQIAKARAQLGYAPDKFSFAD
                     AVERYVQATTPQPCCCTVLTLLRLLLLLLLLLGLLGLALYFLGLQPLQAVVERL"
ORIGIN      
        1 tcccccattt ctcctcttgg cctctccttt atttccgtcc tcttctccct ctttcctctc
       61 atcttctctc tctccttgcc tctcctttct cccccctttc cttttcctcc cccacccttg
      121 ccttcctgat gcttagttca gagcaccaca cccagtgtgt aaggccccat aggtatgact
      181 gactctgcct ccttctggtg ctacatggga cctgtggggg aaatcagggg ttctcagtgt
      241 acatctgagt cacacagcat gactttgagc ctcaggtccc ccagctatga ggtcaaagga
      301 caggctgcct tctctgactc cttaaggagc cagcagccac atggaggttc ttgaggctct
      361 gaaagagtct ggagctctga gagatcgatg aggcccaagt tttcctaaag ttcccttcag
      421 tcctacaaac ctggtaacat gagcattggg atgagcctag aacattcctc tggttttctt
      481 cacaggtgga cagcctctag gctgcacggc ttcatagaga atgaagacca accctgcggg
      541 cgccccacta gaaacctgtc aaactgcagg ccagggcgag aagggatacc ctgtatgcca
      601 ggcctgtgga ggggcctcaa gcctggggtc tgcttcagag tcagggtcag gccttaggcc
      661 agggcctgga gtggctctgg actctgggct ggggcctggg gctattccag gacctgggcc
      721 tgggccgggg cttggaccta gtgctgttcc agggtctggg ccacagccta gtagtgtttc
      781 tgtgactggg ctgcgacctg gtactacttc agggcctaat gcttctctgg gacctgggct
      841 aggaacaggg tcattacctg ggccaggagc taggtctgga ctgaggccag gatgtgactc
      901 agtacctgca ccagcacctc agccaggatc tggcccagta cctcagtcag gatctggccc
      961 agtacctcag tcaggatctg gcccagtacc tcagtcagga gctggctcag tatctcagcc
     1021 aggagctggg tcagtacctc aaccagtaag tgagttagta actagtccag gagctgcacc
     1081 attacctggg ctggggctag gacctggaac cagacgaggc tctgggactg gctctaaccc
     1141 cggtgaatca gtgagagcca cagtaccagc actacagcag aagactgaag ccaagcacac
     1201 acaggctccc agacagaagg ttctggtgac cggaggagga ggttacctgg gcttcagcct
     1261 gggttccagc ctggccaaga aaggcgcctc tgtcatcctg cttgacctcc gcagacccca
     1321 gtggccacta ccctcaggaa ctgagtttat ccaggctgat gtccgagatg aagaagccct
     1381 ataccaagcc ttccaggggg tggactgtgt ctttcacgtg gcctcctacg gcatgtctgg
     1441 ggcagagaag ctacaaaaac gggagattga gtctataaat gtcggaggca ccaaactggt
     1501 gattaatgtc tgcgtccgtc ggcgggttcc aaggctcgta tacaccagca cagtcaacgt
     1561 gacatttggt gggaagccca tagagcaagg caatgaggac tccatcccat atttcccctt
     1621 ggacaagcat atggaccact actctcgaac caaagccatc gctgaccagt tgattctcat
     1681 ggccaatggg acacctctcc taggaggagg caccctccgc acctgtgtgc tccgtccccc
     1741 agggatctat ggtcctgaag aacagaaaca cctgccccgg gtggcgagcc acatcaagaa
     1801 gagactgttc atgttccggt ttggggaccg caggacgcac atgaactggg tccacgtgca
     1861 gaatctggtg caggcacaca tgcgggcggc tgagggcctc accttggcta aaggctacgt
     1921 ggccagcggg caggcatact acatccatga cggggagagt gtcaacctct ttgagtggat
     1981 ggccccactg tttgagaagc tggggtacag ccagccctgg atccaggtac cgacctcctg
     2041 tgtgtatctg acagctgcag tgatggagtt tctgcaccta gcactgagac ctatctgcac
     2101 catctcccca ctactcaccc gcagtgaggt gctcagcatg accgtgacgc acaccttcca
     2161 gattgccaag gcccgcgctc agcttggcta cgcgccggac aagttcagct tcgcagacgc
     2221 agtggagcga tatgtgcagg ccacgacccc gcagccctgc tgttgcaccg tgctgacgct
     2281 cctgcggctg ctgctcctgc tgctgctcct gctcggcttg ctcggcctag ccctgtactt
     2341 tctagggctg cagcctttgc aggcggtggt ggagaggctc tgatccggac cccaaagccg
     2401 gatcaagccc acgtaggctc tctgcgcttc ttcctggctt tgacctcccg gtttaggccc
     2461 gcccctgctt tttggccaca ccccgattcc tggccatgcc cctgctcctc tctctaagct
     2521 tgtctttctg gagtttgggc cgactttccc tgcttttcgc tccctgattc agtgtggttc
     2581 tcttctgtga ggttaggcga ggcggttgat gaagtcccag cctcttatct tacttctcct
     2641 tcccagctat ttccagtcct acccagtcta gccctctctt tcctactctt cccgatcctt
     2701 cctttctgcc tccatctgta cacagaaacc ccagcgaggt cgcttctgta aggacaaacc
     2761 ttggccccgc cttcgcggtt ggtctaaatg cttgagttct ggttggtgga gtctttggaa
     2821 ttgaacctgt tttctgcctc cttctgggac ctcctccctg ccatggcttc tttgagttta
     2881 tcctgatgct gaccaccgac ctttgtgttg actagctggg gaaggatagc caagcccaac
     2941 ttgatagctt ttggttccca gttaatggag tggaaatgac tcagcacagt aaacggtctc
     3001 agtactaaag gaggcaatgg gggaagaaag tttgtaaaag aaatggaatg tctcataaaa
     3061 agtaccaata taacagccga aataagaatt tggctgatca ta
//
