LOCUS       NM_001271269            2635 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus short chain dehydrogenase/reductase family 42E,
            member 1 (Sdr42e1), mRNA.
ACCESSION   NM_001271269 XM_001078486 XM_226509
VERSION     NM_001271269.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2635)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            FQ103187.1, FN798906.1, BI295943.1, JAXUCZ010000019.1 and
            BQ196592.1.
            
            On or before Sep 13, 2012 this sequence version replaced
            XM_001078486.3, XM_226509.6.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data from different strains because no single
            transcript from the same strain was available for the full length
            of the gene. The extent of this transcript is supported by
            transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.64872.1,
                                           SRR26360172.1742801.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-655               FQ103187.1         2-656
            656-857             FN798906.1         538-739
            858-1298            BI295943.1         21-461              c
            1299-1966           JAXUCZ010000019.1  62624799-62625466   c
            1967-2635           BQ196592.1         17-685              c
FEATURES             Location/Qualifiers
     source          1..2635
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..2635
                     /gene="Sdr42e1"
                     /gene_synonym="Hspc105; RGD1308481"
                     /note="short chain dehydrogenase/reductase family 42E,
                     member 1"
                     /db_xref="GeneID:307897"
                     /db_xref="RGD:1308481"
     exon            1..79
                     /gene="Sdr42e1"
                     /gene_synonym="Hspc105; RGD1308481"
                     /inference="alignment:Splign:2.1.0"
     exon            80..173
                     /gene="Sdr42e1"
                     /gene_synonym="Hspc105; RGD1308481"
                     /inference="alignment:Splign:2.1.0"
     CDS             106..1287
                     /gene="Sdr42e1"
                     /gene_synonym="Hspc105; RGD1308481"
                     /codon_start=1
                     /product="short-chain dehydrogenase/reductase family 42E
                     member 1"
                     /protein_id="NP_001258198.1"
                     /db_xref="GeneID:307897"
                     /db_xref="RGD:1308481"
                     /translation="MDSPRFPEETVLITGGGGYFGFRLGCALNQKGVRVILFDIIEPA
                     QNLPEGITFVRGDIRCLSDVEAAFQDADIACVFHIASYGMSGREQLNKTRIEEVNVGG
                     TENILQACLGRGVPSLVYTSTFNVIFGGQVIRNGDESLPYLPLHLHPDHYSRTKSIAE
                     KKVLEANGLAFKQGDGVLRTCAIRPAGIYGAGEQRHLPRVVSYIERGLFRFVYGDPQS
                     LVEFVHVDNLAKAHILASEALKADKGHIASGQPYFISDGRPVNNFEFFRPLVEGLGYT
                     FPTTRLPLTLIYYFAFLIEMTHLIVGRLYNFQPFLTCTEVYKTGVTHYFSLEKAKSEL
                     GYAPQPFDLQEVVEWFKAHGHGRRPRGQDSEFILWDGILVLLLAFSVLTWIPPSTILS
                     L"
     exon            174..2635
                     /gene="Sdr42e1"
                     /gene_synonym="Hspc105; RGD1308481"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttttgctcca gagccggggc agcgaggcac cagccgctct ctcatcttgc ttctacaagc
       61 cacactgtca tctgcctctg tccagttgtc ctttcactgt ctcgtatgga ctccccaagg
      121 ttcccggagg aaaccgtcct cattaccgga ggaggaggat attttggctt ccgcctcggc
      181 tgcgctctga accagaaagg agtccgtgtg attctgttcg acatcatcga accggcccag
      241 aaccttccag agggaatcac attcgtccgc ggggatatcc gctgcctctc tgacgtggag
      301 gcggccttcc aggatgctga catcgcatgc gtcttccaca tcgcctctta cggcatgtct
      361 gggagggagc aactgaacaa aacccggatt gaagaggtca acgtgggtgg cacagagaac
      421 atcctccagg cctgcctagg gagaggagtg cccagcttgg tctacacgag cacatttaac
      481 gtcatcttcg gaggtcaagt catcagaaac ggggacgagt ctctgcctta cctacctctt
      541 cacctgcacc cagatcacta ctccaggacc aaatccattg cagagaagaa ggtcctggaa
      601 gccaatggct tggccttcaa gcaaggggat ggcgtactca gaacctgtgc gataaggcca
      661 gctggcatct acggggctgg agagcagagg caccttccca gggtggttag ctacattgag
      721 aggggcctgt tcagattcgt gtatggggat ccccaaagcc tggtcgagtt tgtccacgtg
      781 gataacctgg cgaaggctca cattctggcc tccgaggctc tgaaagctga taagggccac
      841 attgcctccg ggcagcccta cttcatctcg gacggtaggc ccgtaaataa ctttgagttc
      901 tttaggccac tggttgaggg tctgggctac acattcccaa ccacccgcct gccactaacc
      961 ctcatctact acttcgcttt cctgatagag atgacccacc tcattgtggg caggctctac
     1021 aacttccagc ccttcctcac ctgcaccgag gtttataaaa ctggtgtcac acattacttc
     1081 agcctagaga aagccaagag tgagctaggc tatgcacctc agccgtttga cctgcaggag
     1141 gtggtcgagt ggtttaaagc ccatggtcat ggccgaaggc ctcgaggtca agactcagag
     1201 tttattctgt gggatggaat tctggtccta ctcttggcgt tttctgttct gacctggatc
     1261 cctccttcca caatcctgtc cctatgaaga gaaaaactat acacaggagc cgagcctcct
     1321 tcctgggatg gttttcaagg atgcaggttt tgaaagatgt gtcatattat ctagtaccat
     1381 tcctgggtct tcagattatt tcctaacaat gagtcttcaa acatcatggc cagggctacc
     1441 tccttatgag tggttgatca gggagactgc tgaggcctcc aagacagcat tgactcttgc
     1501 caatgctctt ggttgcccac cagaactagg tagtaagcct ctgttgccta aggtgccatg
     1561 caccttaact acagcacata aagaagtcca actggaactg aactggaagc ttcctccctg
     1621 cctgctagat ttcatagttc cggaagggtc tatactagcg actggaggaa aacagtcttg
     1681 ttcagctgtg gagcctgcat gtagcactac caagtgggca aggcataccc tcgagtacac
     1741 tcctggcatg tctgttaggg gataaccaac tgcttccgag ttggattgga ggctggctcc
     1801 ctaggaggga gttcgttcct ggttcctggt ataaacctgg cctgaagctc atggatagag
     1861 aggtcacagg ccaagtgtag tctacttctg ttgttttgct ggatagagaa gtcgtgccca
     1921 cgaaactgct ctataaatgt ttatgtttat atctgtagat tagtgctact ctcagctgta
     1981 atcagagacg cttctctcca ccgtgggcac cagtcatgct tccgaggctc ataactggtc
     2041 caagtgctaa gtgttgagtg ttcatccaga gacaggacgt ctgtatcatt ccctgaaagc
     2101 ctcacaggac tttgtagcaa aagggaaaga atgcataagc tggaggaggt ggacggggag
     2161 aggttgctgg tgttgctggt gttagggaga ctgtctcctg agaatgacat gacttctgtc
     2221 ctcatgaact aactataact gtgatacagt actagactcc gtacgatgag gcctaccccc
     2281 attccgccat gggaaggaga gaagctccca atactcactc ctcctgagaa gatgagggtg
     2341 gttgatagtt tctggggagg tggagacagt ttctctagcg atttagtccc ttctaagttg
     2401 ccccattctc ctgtaagcaa gcttaatgaa actctttgac acacacacac acacacacac
     2461 acacactgac atggattaga aagcaatcta gatgggaaga ggtaagagtt ctgtgggaat
     2521 gggacataac agggtgtggg gggaatccga tcggactacc ttatatacat gttcgaacat
     2581 gtcataatga aactcttata cactgaatcc atactaataa aaaaagaaaa atgaa
//
