LOCUS       NM_001108378            1335 bp    mRNA    linear   ROD 22-SEP-2024
DEFINITION  Rattus norvegicus short chain dehydrogenase/reductase family 39U,
            member 1 (Sdr39u1), transcript variant 2, mRNA.
ACCESSION   NM_001108378 XM_001061937 XM_341321
VERSION     NM_001108378.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1335)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 1335)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Jan 12, 2022 this sequence version replaced NM_001108378.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.1370452.1,
                                           SRR26360190.50428.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-156               JAXUCZ010000015.1  33350707-33350862   c
            157-263             JAXUCZ010000015.1  33350509-33350615   c
            264-346             JAXUCZ010000015.1  33350340-33350422   c
            347-468             JAXUCZ010000015.1  33349937-33350058   c
            469-612             JAXUCZ010000015.1  33349030-33349173   c
            613-1335            JAXUCZ010000015.1  33348059-33348781   c
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p13"
     gene            1..1335
                     /gene="Sdr39u1"
                     /gene_synonym="RGD1309307"
                     /note="short chain dehydrogenase/reductase family 39U,
                     member 1"
                     /db_xref="GeneID:361044"
                     /db_xref="RGD:1309307"
     exon            1..156
                     /gene="Sdr39u1"
                     /gene_synonym="RGD1309307"
                     /inference="alignment:Splign:2.1.0"
     CDS             129..1025
                     /gene="Sdr39u1"
                     /gene_synonym="RGD1309307"
                     /note="isoform 2 is encoded by transcript variant 2;
                     epimerase family protein SDR39U1"
                     /codon_start=1
                     /product="epimerase family protein SDR39U1 isoform 2"
                     /protein_id="NP_001101848.1"
                     /db_xref="GeneID:361044"
                     /db_xref="RGD:1309307"
                     /translation="MTCVTSASRGGGTGFIGTALTQLLKTKGHEVKLVSRQPGPDRIT
                     WTELSRSGLPLCDVVINLAGENILNPLRRWNETFQKEVLTSRLDTTHLLAKAITEAAQ
                     PPQAWILVTGVAYYQPSLTEEYDEDSPGGDFDFFSNLVTKWEAAARLPGESTRQVVVR
                     SGVVLGRRGGAIGHMLLPFRLGLGGPIGSGHQFFPWIHISDLAGILNHALEANHVQGV
                     LNGVAPASTTTNADFAQALGAALGRPAFIPVPSAVVQAIFGRERAIMLLEGQKVVPRR
                     TLATGYQYSFPELGAALKDVVT"
     exon            157..263
                     /gene="Sdr39u1"
                     /gene_synonym="RGD1309307"
                     /inference="alignment:Splign:2.1.0"
     exon            264..346
                     /gene="Sdr39u1"
                     /gene_synonym="RGD1309307"
                     /inference="alignment:Splign:2.1.0"
     exon            347..468
                     /gene="Sdr39u1"
                     /gene_synonym="RGD1309307"
                     /inference="alignment:Splign:2.1.0"
     exon            469..612
                     /gene="Sdr39u1"
                     /gene_synonym="RGD1309307"
                     /inference="alignment:Splign:2.1.0"
     exon            613..1335
                     /gene="Sdr39u1"
                     /gene_synonym="RGD1309307"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggctgagag ttgcgggcgg cttaggctgc ctcccagagc tggaaaaaca ggcccacagg
       61 tttcaatctc ctaagcaggc aacctagcct tggcttccca gccccaaaag ctgaatctgt
      121 gaaaccccat gacctgtgtc acctctgcat cgcggggtgg cgggacggga ttcattggga
      181 cagccctaac acagctactg aaaaccaagg gccacgaagt taagttggtc tccagacagc
      241 ctggcccgga tcgaattacg tggactgagc tcagcaggtc ggggctgccc ctctgtgatg
      301 ttgtcatcaa cctggctgga gagaacatcc tcaaccctct gcgaagatgg aatgaaacct
      361 tccaaaagga ggttcttacc agccgcctgg ataccaccca cttgctagct aaagccatca
      421 cggaagctgc acaaccacct caggcctgga tactagtcac aggtgtagct tactaccagc
      481 caagcctgac tgaggagtat gatgaagaca gcccaggagg ggattttgac tttttctcca
      541 acctggtaac caaatgggaa gcagcagcca ggcttcctgg agagtctaca cgccaggtcg
      601 tggtacgttc aggggttgtg ctgggccgca ggggcggtgc catcggccac atgcttctgc
      661 ccttccgcct gggcctagga ggccccattg gttcaggtca ccagttcttc ccctggatac
      721 acattagtga cctggcagga attctgaatc atgcccttga ggcaaaccac gtccaaggag
      781 tcctgaatgg agtagctcca gcatctacaa ctaccaatgc cgattttgcc caggccttgg
      841 gtgctgccct gggccgccca gccttcatac ctgtccccag cgctgtggta caagcaatct
      901 ttggacgaga gcgtgccatc atgctgttgg aaggccagaa agtggtcccc cggaggacac
      961 tggccacggg ctaccagtat tccttcccag agttaggagc tgccttaaag gatgttgtaa
     1021 cctaagtaga gaagggagcc ccaaggcagg aggtggggcc tgttcctgca ttctgagaag
     1081 tgagtcaggt gattgctgta cttgactgag atcagaagcc atctggctct tagactctct
     1141 ctctctcccc tttcttccca tgttctgttg atccacctct ctccaagaaa ctccagtctc
     1201 aaggatctaa tctcattcta accttaacct cctcaacttc ttgtggcttc tgtgtcacat
     1261 tgttgccctg gttctcctac atgctatgta gacaaagttc tacagttgtg gcaataaagg
     1321 tagactgtgt ctgta
//
