LOCUS       NM_001109356            1642 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus short chain dehydrogenase/reductase family 16C,
            member 6 (Sdr16c6), mRNA.
ACCESSION   NM_001109356 XM_001069696 XM_578441
VERSION     NM_001109356.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1642)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473984.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_578441.2, XM_001069696.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760389
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1642
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q12"
     gene            1..1642
                     /gene="Sdr16c6"
                     /gene_synonym="RGD1562060"
                     /note="short chain dehydrogenase/reductase family 16C,
                     member 6"
                     /db_xref="GeneID:502939"
                     /db_xref="RGD:1562060"
     exon            1..72
                     /gene="Sdr16c6"
                     /gene_synonym="RGD1562060"
                     /inference="alignment:Splign:2.1.0"
     exon            73..419
                     /gene="Sdr16c6"
                     /gene_synonym="RGD1562060"
                     /inference="alignment:Splign:2.1.0"
     CDS             99..1049
                     /gene="Sdr16c6"
                     /gene_synonym="RGD1562060"
                     /codon_start=1
                     /product="short-chain dehydrogenase/reductase family 16C
                     member 6"
                     /protein_id="NP_001102826.1"
                     /db_xref="GeneID:502939"
                     /db_xref="RGD:1562060"
                     /translation="MHAVADTVIFFGKFLYYFLESLVFKVIPKRRKDVSGEIVLITGA
                     GSGLGRLLAMHFANHGATLVLWDINQEGNMETYKLVKQKGDVKVFAYKCDCSNRTEVY
                     RVADQVREEVGDVTILINNAGIVTGKSFLDTPDHLVEKSFLVNAISHFWICKTFLPAM
                     INANHGHLVCISSIAGVVGINGLSDYSSSKFAAFGLAESLFLELTMVRKTNIKSTIVC
                     PYFIKTGMFEGCKTKYPLLLPLLEQEFVAQKIFHAILEDQVYLLIPKFAYFTLFLKQL
                     ISPKMMIALGEYLGVDTCMTSFTGRAEAELLQTETERKEQ"
     exon            420..551
                     /gene="Sdr16c6"
                     /gene_synonym="RGD1562060"
                     /inference="alignment:Splign:2.1.0"
     exon            552..651
                     /gene="Sdr16c6"
                     /gene_synonym="RGD1562060"
                     /inference="alignment:Splign:2.1.0"
     exon            652..796
                     /gene="Sdr16c6"
                     /gene_synonym="RGD1562060"
                     /inference="alignment:Splign:2.1.0"
     exon            797..922
                     /gene="Sdr16c6"
                     /gene_synonym="RGD1562060"
                     /inference="alignment:Splign:2.1.0"
     exon            923..1642
                     /gene="Sdr16c6"
                     /gene_synonym="RGD1562060"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagtttctgc ctcaagttcc taccattaat tcctttcctg acttcccttc atgacagact
       61 gaaacctgta aggacattgc tttcttcaat caatcaatat gcatgcagtg gcagacacag
      121 ttatcttttt tggaaagttt ctatattact ttttagaatc tttagttttc aaggtaattc
      181 ctaaaagaag aaaggatgtt tctggagaga ttgtacttat aacaggagct gggagtggac
      241 ttggaaggct actggccatg cattttgcca accacggggc caccttagtt ctctgggaca
      301 ttaatcaaga aggcaatatg gaaacatata aactggtcaa acaaaaaggt gatgtgaaag
      361 tctttgccta caagtgtgat tgcagcaaca gaacagaggt ctacagagtt gctgatcagg
      421 ttagagaaga agttggtgat gtcaccattc tcattaataa tgcaggtatt gtgacaggaa
      481 agtcgttcct tgatactcca gatcacttgg tggaaaaatc atttcttgtc aatgccatct
      541 ctcacttctg gatttgtaaa acctttcttc ctgccatgat taacgctaac catggtcacc
      601 tggtctgtat ttcaagcata gcaggagtcg ttggtattaa tggactatca gattattctt
      661 caagcaaatt tgcagccttt ggtcttgctg agtctctctt ccttgaatta actatggtac
      721 ggaaaactaa tattaaaagc accattgttt gcccctattt catcaaaact ggaatgtttg
      781 aaggctgtaa aaccaagtat ccacttctct tacctctcct ggagcaggaa ttcgtggccc
      841 aaaaaatttt ccatgctatt ttagaggacc aagtttacct cctcataccc aagtttgcat
      901 attttacatt gtttctcaaa caactgatat ctccaaaaat gatgattgcc ctgggtgagt
      961 accttggtgt ggacacatgt atgacttcgt tcacagggag agccgaagca gaattgctgc
     1021 agactgaaac agaaaggaaa gagcaatagc tcaggcctcg accatgataa cgacatatag
     1081 agatgagaca ggatgctgtt gggaatctcc ctagtggttg cagcatccca gtgtacctgg
     1141 ggccatccag gctttgggaa atatgtaact tgtcttctca ggagacagtt tgcacatggc
     1201 tcttagtctt tttctcttct ctctcctggt tgtttttcta tctctctctc acaaaaagat
     1261 tctcaatata ttgtctagac tggcttttca tatactcctg ctggatttgt agacatttat
     1321 tctctttctc agccacactg atatttttta acatttatat tatctattca gattcccata
     1381 tatttcttca gcatggtaaa taaaaatgtt gtagcctttt cagtgaactc caaaaagact
     1441 acatgatgat catataaaga ctgttataaa gactaaatct gaacatgctt attggattaa
     1501 agaaacctgt aacttaacag ttttgttcgc atcccaatgt gttgaacaat tcttcattct
     1561 tttacttcat atgaaaaata aacaatttag actttctatg ctctgctggc ttgtaaataa
     1621 aacttatttt tgtattaaca tc
//
