LOCUS       NM_001105803            1280 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus stromal cell derived factor 2 (Sdf2), mRNA.
ACCESSION   NM_001105803 XM_001080807 XM_213377
VERSION     NM_001105803.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1280)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1280)
  AUTHORS   Bonaldo MF, Lennon G and Soares MB.
  TITLE     Normalization and subtraction: two approaches to facilitate gene
            discovery
  JOURNAL   Genome Res 6 (9), 791-806 (1996)
   PUBMED   8889548
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CO570263.1, CB326294.1 and BI274683.1.
            
            On Apr 18, 2009 this sequence version replaced NM_001105803.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CO570263.1, CB313913.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-631               CO570263.1         1-631
            632-1254            CB326294.1         4-626               c
            1255-1280           BI274683.1         1-26                c
FEATURES             Location/Qualifiers
     source          1..1280
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q25"
     gene            1..1280
                     /gene="Sdf2"
                     /note="stromal cell derived factor 2"
                     /db_xref="GeneID:287470"
                     /db_xref="RGD:1307274"
     exon            1..439
                     /gene="Sdf2"
                     /inference="alignment:Splign:2.1.0"
     CDS             265..924
                     /gene="Sdf2"
                     /codon_start=1
                     /product="stromal cell-derived factor 2 precursor"
                     /protein_id="NP_001099273.2"
                     /db_xref="GeneID:287470"
                     /db_xref="RGD:1307274"
                     /translation="MIRALGSRMAVLSLLLLGGLWSAVGASNMAVVTCGSVVKLLNIR
                     HNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATVCERGTPIKCGQPIRL
                     THINTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKH
                     SSTDVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSELLRAEVHHAE
                     L"
     exon            440..636
                     /gene="Sdf2"
                     /inference="alignment:Splign:2.1.0"
     exon            637..1263
                     /gene="Sdf2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctgtcacta ggagtgggag ggtcatttcc tgatcttttt ctctccggtg tctagggctt
       61 tggttccgag tccgcgaacg cagactgaag acacataagg aacgcagctg ccacagagca
      121 cccagaacaa agcggggcca gcgtgttcct taagccgctc tagccaaagg aaccataaag
      181 attcaggtta aggagtcttc acttccatct tggcgtagtt ctgcccttgg cttccggttc
      241 cggggaaggg cctaattttc ttggatgatt agggctctcg gatctaggat ggctgtcttg
      301 tcgcttctgt tgttgggtgg tttgtggagc gctgtgggag cgtccaacat ggctgtcgtt
      361 acttgcggct ccgtggtgaa gctactcaat atacgccaca atgtccgact gcactctcac
      421 gacgtgcgct acgggtcagg tagtgggcag cagtcagtga caggtgtgac ctctgtggat
      481 gacagcaaca gttactggag gatacggggg aagacagcta cagtgtgtga aaggggaaca
      541 cccatcaaat gcgggcagcc catccggctg acacacatca acacaggtcg aaacctgcac
      601 agccaccatt tcacttcacc tctctctgga aaccaggaag tgagtgcctt tggtgaagaa
      661 ggtgaaggtg actatctgga tgactggaca gtgctctgta atggacctta ctgggtgaga
      721 gacggggaag tgaggttcaa acattcttcc accgacgtac tcctgtctgt cacaggagaa
      781 cagtacggtc gacccataag tggacaaaaa gaagtacatg gtatggccca gccaagtcag
      841 aacaactact ggaaggccat ggaaggcatt ttcatgaagc ccagtgagtt gctgagggca
      901 gaggtccatc atgcagagct gtgactctaa atcctctgag ccactgtcgc cacacagtgt
      961 ttgtagacat ctgctgctgc ttcaccatgg gatccctgct cctggtcctc tgagtgtgct
     1021 tcatttggac ctgcagtcct tcacacttga aatggttgct ctcccaggtt tagtcagttc
     1081 tcaggagagg actcgtctgt gaaggcaggg ctaccttcat tcatgctggt aaaagaagtt
     1141 gaggaacttg cctgtcttaa gttaagctgg gaaggttaac tccacaggag cttggcatca
     1201 tgattttccc ccgttttgtc tatctccaaa atgatgaata aaaaataaaa agaattttat
     1261 tcaaaaaaaa aaaaaaaaaa
//
