LOCUS       NM_001025692            1444 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus syndecan binding protein 2 (Sdcbp2), mRNA.
ACCESSION   NM_001025692 XM_230715
VERSION     NM_001025692.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1444)
  AUTHORS   Yachie,N., Petsalaki,E., Mellor,J.C., Weile,J., Jacob,Y., Verby,M.,
            Ozturk,S.B., Li,S., Cote,A.G., Mosca,R., Knapp,J.J., Ko,M., Yu,A.,
            Gebbia,M., Sahni,N., Yi,S., Tyagi,T., Sheykhkarimli,D., Roth,J.F.,
            Wong,C., Musa,L., Snider,J., Liu,Y.C., Yu,H., Braun,P.,
            Stagljar,I., Hao,T., Calderwood,M.A., Pelletier,L., Aloy,P.,
            Hill,D.E., Vidal,M. and Roth,F.P.
  TITLE     Pooled-matrix protein interaction screens using Barcode Fusion
            Genetics
  JOURNAL   Mol Syst Biol 12 (4), 863 (2016)
   PUBMED   27107012
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1444)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   3  (bases 1 to 1444)
  AUTHORS   Mortier,E., Wuytens,G., Leenaerts,I., Hannes,F., Heung,M.Y.,
            Degeest,G., David,G. and Zimmermann,P.
  TITLE     Nuclear speckles and nucleoli targeting by PIP2-PDZ domain
            interactions
  JOURNAL   EMBO J 24 (14), 2556-2565 (2005)
   PUBMED   15961997
REFERENCE   4  (bases 1 to 1444)
  AUTHORS   Koroll,M., Rathjen,F.G. and Volkmer,H.
  TITLE     The neural cell recognition molecule neurofascin interacts with
            syntenin-1 but not with syntenin-2, both of which reveal
            self-associating activity
  JOURNAL   J Biol Chem 276 (14), 10646-10654 (2001)
   PUBMED   11152476
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC099095.1.
            
            On Jul 22, 2005 this sequence version replaced XM_230715.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC099095.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN09345330, SAMN11044071
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1444
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q41"
     gene            1..1444
                     /gene="Sdcbp2"
                     /note="syndecan binding protein 2"
                     /db_xref="GeneID:311532"
                     /db_xref="RGD:1307709"
     exon            1..58
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            59..130
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
     CDS             77..967
                     /gene="Sdcbp2"
                     /note="syndecan binding protein (syntenin) 2"
                     /codon_start=1
                     /product="syntenin-2"
                     /protein_id="NP_001020863.1"
                     /db_xref="GeneID:311532"
                     /db_xref="RGD:1307709"
                     /translation="MSVLYPSLEDLKVGQVIQAQARASPMMPTVMPTLPASMASAPPL
                     SELYPNLAELESYMGLSLSSQEVQKNLSQIPDGDNMVITSPGPGQVTAPVSGNDLGVL
                     RAEIKPGVREIHLCKDERGKTGLRLQAVDKGLFVQLVQANTPASLVGLRFGDQILQID
                     GCDCAGWSTHKAQKALKKASAEKIVMVVRDRPFQRTVTMHKDSSGQVGFFIKKGKIVS
                     VVKGSSAARNGLLTNHYVCEVNGQNVIGLKDKKIIEILTTAGNVITLTIIPTVIYEHM
                     IKKLSPLLLHHTMDHSIPDT"
     exon            131..212
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            213..313
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            314..472
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            473..648
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            649..820
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            821..912
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            913..1418
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagcacaccc caggaggctg cagtagctgg agaagggcac agagtgggga gccagcagtg
       61 tgcttcagga ggcaatatgt ctgtcctgta cccatctctg gaggatctga aggtgggcca
      121 agtcatccag gcccaggcca gagcctcacc catgatgccc actgtgatgc ccactctgcc
      181 agcttcgatg gcctctgcac ccccactctc agagctgtat ccaaacctag cagaactgga
      241 aagttatatg ggactgtccc tctctagcca agaagttcag aagaatctgt ctcagattcc
      301 agatggtgac aatatggtga tcactagccc tggacctggc caggtgacag cgccagtatc
      361 tgggaacgac ctaggtgtcc tgcgtgcaga gatcaagcct ggtgtgcgag agatccacct
      421 gtgcaaggat gagcggggca agactggact gcgtctgcag gctgttgaca aggggctctt
      481 tgtgcagctg gtccaggcca acaccccagc atcccttgtg ggattgcgct ttggggacca
      541 gatcctgcag atcgatggct gtgactgtgc tgggtggagc acacacaaag ctcagaaagc
      601 attgaagaag gcatcagcag agaagatcgt catggttgta cgggacaggc cgttccagcg
      661 gactgtcacc atgcacaaag acagctcagg tcaagttggc ttcttcatca aaaaggggaa
      721 gattgtctct gtggtcaagg gaagctctgc agcccgcaat ggacttctaa cgaaccacta
      781 cgtgtgtgag gtgaacggac agaacgtcat tgggctaaag gacaaaaaga ttatcgagat
      841 tctgaccaca gctggaaatg ttatcacact gaccatcatc cccactgtga tttacgagca
      901 tatgatcaaa aagttgtctc cattgctgct tcaccacacc atggaccact ccattccaga
      961 cacctgaagt tccaggaggg cagtatgggc ttcccaccat cctgcaggga agacagcagt
     1021 cctcagacga caggctgcag ctggcttgct gcctgggtct gggtattgca ggggtgtgtc
     1081 ccaggtggat atatattgga tgggtctaaa atggccggtc ctaggcctcc tgggatccag
     1141 actcctagct atgctgaggt acaggcggat ttaggcatct gggtctcttt gccctaggtg
     1201 ctgggcactt aggcagaaca gcagaatgtc actgggtgct gctgtgtccc tttgcctcat
     1261 gtaggaagtc agccccttga tctgacagac gggtgccttg tgtgttgtct tcattgatct
     1321 ttgtcacggg ttatgtatag actaatggta accctttcct gtctgtaggc tggttgtaac
     1381 cctttactgt cttttaaata aagagtggat ttaaaacaaa aaaaaaaaaa aaaaaaaaaa
     1441 aaaa
//
