LOCUS       NM_001006958            2244 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus SDA1 domain containing 1 (Sdad1), mRNA.
ACCESSION   NM_001006958 XM_214005
VERSION     NM_001006958.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2244)
  AUTHORS   Jing,L., Li,S., Wang,J. and Zhang,G.
  TITLE     Long non-coding RNA small nucleolar RNA host gene 7 facilitates
            cardiac hypertrophy via stabilization of SDA1 domain containing 1
            mRNA
  JOURNAL   J Cell Biochem 120 (9), 15089-15097 (2019)
   PUBMED   31026094
  REMARK    GeneRIF: Long non-coding RNA small nucleolar RNA host gene 7
            facilitates cardiac hypertrophy via stabilization of SDA1 domain
            containing 1 mRNA.
REFERENCE   2  (bases 1 to 2244)
  AUTHORS   Tarantino,C., Paolella,G., Cozzuto,L., Minopoli,G., Pastore,L.,
            Parisi,S. and Russo,T.
  TITLE     miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic
            stem cells
  JOURNAL   FASEB J 24 (9), 3255-3263 (2010)
   PUBMED   20439489
REFERENCE   3  (bases 1 to 2244)
  AUTHORS   Fox,M., Urano,J. and Reijo Pera,R.A.
  TITLE     Identification and characterization of RNA sequences to which human
            PUMILIO-2 (PUM2) and deleted in Azoospermia-like (DAZL) bind
  JOURNAL   Genomics 85 (1), 92-105 (2005)
   PUBMED   15607425
REFERENCE   4  (bases 1 to 2244)
  AUTHORS   Babbio,F., Farinacci,M., Saracino,F., Carbone,M.L. and Privitera,E.
  TITLE     Expression and localization studies of hSDA, the human ortholog of
            the yeast SDA1 gene
  JOURNAL   Cell Cycle 3 (4), 486-490 (2004)
   PUBMED   14976432
REFERENCE   5  (bases 1 to 2244)
  AUTHORS   Andersen,J.S., Lyon,C.E., Fox,A.H., Leung,A.K., Lam,Y.W., Steen,H.,
            Mann,M. and Lamond,A.I.
  TITLE     Directed proteomic analysis of the human nucleolus
  JOURNAL   Curr Biol 12 (1), 1-11 (2002)
   PUBMED   11790298
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On Mar 16, 2021 this sequence version replaced NM_001006958.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083620.1, SRR22582419.1254975.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-161               JAXUCZ010000014.1  16025787-16025947
            162-266             JAXUCZ010000014.1  16030628-16030732
            267-365             JAXUCZ010000014.1  16031140-16031238
            366-476             JAXUCZ010000014.1  16031405-16031515
            477-548             JAXUCZ010000014.1  16033233-16033304
            549-649             JAXUCZ010000014.1  16033420-16033520
            650-707             JAXUCZ010000014.1  16034499-16034556
            708-782             JAXUCZ010000014.1  16035281-16035355
            783-884             JAXUCZ010000014.1  16036952-16037053
            885-954             JAXUCZ010000014.1  16038550-16038619
            955-1058            JAXUCZ010000014.1  16039484-16039587
            1059-1116           JAXUCZ010000014.1  16040886-16040943
            1117-1175           JAXUCZ010000014.1  16042947-16043005
            1176-1252           JAXUCZ010000014.1  16044293-16044369
            1253-1350           JAXUCZ010000014.1  16044971-16045068
            1351-1427           JAXUCZ010000014.1  16045174-16045250
            1428-1554           JAXUCZ010000014.1  16045800-16045926
            1555-1646           JAXUCZ010000014.1  16047259-16047350
            1647-1922           JAXUCZ010000014.1  16047473-16047748
            1923-2084           JAXUCZ010000014.1  16048719-16048880
            2085-2244           JAXUCZ010000014.1  16052406-16052565
FEATURES             Location/Qualifiers
     source          1..2244
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14p22"
     gene            1..2244
                     /gene="Sdad1"
                     /note="SDA1 domain containing 1"
                     /db_xref="GeneID:289504"
                     /db_xref="RGD:1359112"
     exon            1..161
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     CDS             72..2132
                     /gene="Sdad1"
                     /note="SDA1 domain-containing protein 1"
                     /codon_start=1
                     /product="protein SDA1 homolog"
                     /protein_id="NP_001006959.1"
                     /db_xref="GeneID:289504"
                     /db_xref="RGD:1359112"
                     /translation="MSGRNNNKLPSNLPQLQNLIKRDPPAYVEEFLQQYNHYKSNMEI
                     FKLQPNKPSKELAELVMFMAQIGHCYPEHLSEFPQELKDLLSYNHTVLDPDLRMTFCK
                     ALILLRNKNLINPSDLLELFFELLRCRDKLLRKTLYTHIVTDIKNINAKHKNNKVNVV
                     LQNFMYTMLRDSNATAAKMSLDVMIELYRRNIWNDAKTVNVITTACFSKITKILVAAL
                     TFFLGKDEEEKQDSDSESEDDGPTARDLLVQYATGKKGSKNKKKLEKAMKVLKKQKKK
                     KKPEVFNFSAIHLIHDPQDFAEKLLKQLESCKERFEVKMMLMNLISRLVGIHELFLFN
                     FYPFVQRFLQPHQREVTKILLFAAQASHHLVPPEIIQSLLLTVANNFVTDKNSGEVMT
                     VGINAIKEITARCPLAMTEELLQDLAQYKTHKDKNVMMSARTLIHLFRTLNPQMLQKK
                     FRGKPTEASIEARIQEYGELDAKDYIPGAEVLELEKEENTENDEDGWESASLSEEEED
                     GEWVDVHHSSDEEQQAVAKKLDSMPMEERKAKAAAVSTSRVLTQDDFQKIRMAQMKKE
                     MDAAPGKAQKRKYLDMDSDEESRGELLSLRDIERLHKKPKSDKETRLATAMAGRTDRK
                     EFVRKKTKINPFSSSTNKEKKKQKNFMMMRYSQNVRSKTSRSFREKQLALRDALLKKR
                     KRMK"
     exon            162..266
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            267..365
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            366..476
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            477..548
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            549..649
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            650..707
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            708..782
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            783..884
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            885..954
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            955..1058
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1059..1116
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1117..1175
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1176..1252
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1253..1350
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1351..1427
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1428..1554
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1555..1646
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1647..1922
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1923..2084
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
     exon            2085..2244
                     /gene="Sdad1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caccaggctg agactgacag aggcctacgt tttccaagaa ctgctcgcca gggagcctat
       61 ctacagccac catgtccggg aggaacaaca acaagctgcc cagcaacctg ccgcagttac
      121 agaacctgat caagcgggac ccgccggcct atgtcgagga gttccttcag caatataatc
      181 actataaatc caatatggag attttcaagt tacaacccaa taaacccagc aaagaactcg
      241 cagagctggt gatgttcatg gcacagattg gccactgcta cccggagcat ctcagtgagt
      301 tcccacagga gctgaaggac ctgctctcct acaaccacac tgtcctagac cccgatctcc
      361 gcatgacatt ttgcaaagcg ttgatcttac tgagaaataa gaacctcatc aatccatcgg
      421 atctgctaga gctcttcttt gagctgctgc gctgccgtga caagctcctg cggaagactc
      481 tgtacacaca tattgtgact gacatcaaga acatcaacgc caaacacaag aacaacaagg
      541 tgaacgtggt gctgcagaac ttcatgtaca ccatgctgag agacagcaat gcaaccgcag
      601 ccaagatgtc tttggatgtg atgattgaac tgtacagaag gaacatctgg aacgatgcca
      661 aaactgtcaa tgttattaca accgcatgtt tctccaagat caccaagata ttagttgctg
      721 ctttgacgtt cttcctcgga aaagatgagg aagagaagca ggacagtgac tcagagtccg
      781 aggacgacgg gcccacagca agagacctgc tggtgcagta tgccacggga aagaagggct
      841 ccaaaaacaa gaagaagctg gaaaaggcca tgaaagtgct gaagaaacaa aagaagaaga
      901 agaaaccaga agtgtttaac ttttcagcta ttcacttgat tcatgatccc caagactttg
      961 cagagaagct tctgaagcag ctggagagct gtaaggagag gttcgaagtg aagatgatgc
     1021 tcatgaacct catctccaga ttggtgggca ttcacgagct tttcctcttc aacttctacc
     1081 ctttcgtgca aaggttcctg cagccccacc agagagaagt cacgaagatc cttctgtttg
     1141 ctgcacaagc ctctcatcac ctggtgcccc cagagattat tcagtccttg ctcctgacgg
     1201 tggccaacaa ttttgtcact gacaagaact ctggggaagt catgaccgta ggaatcaatg
     1261 ctataaaaga gatcacagca cgatgtcctc tggccatgac cgaagagctt cttcaggacc
     1321 tggctcagta taagacacac aaagacaaga atgtaatgat gtctgccaga actctgatcc
     1381 atctcttccg gacactgaac cctcagatgc tgcagaagaa gttccggggc aaacccaccg
     1441 aagcctccat cgaagcaagg atacaagaat atggagaact agatgccaag gactacatcc
     1501 cgggagcaga ggttctagag ctggagaagg aggagaatac agaaaacgat gaagatggat
     1561 gggaaagtgc cagcctcagt gaggaggagg aggatggcga gtgggttgat gtgcaccact
     1621 cttctgacga ggaacagcaa gcagttgcca agaagctgga cagcatgccc atggaggagc
     1681 ggaaagccaa agccgccgcc gtcagcacca gtcgggtctt aacgcaggat gacttccaga
     1741 aaatccgcat ggcccagatg aagaaggaaa tggacgctgc cccggggaaa gcccagaaaa
     1801 ggaaatactt ggacatggac agtgacgagg agtccagggg ggagttgctg tctcttcggg
     1861 acattgaacg ccttcataaa aagcccaagt ccgacaagga gacgagacta gcaaccgcta
     1921 tggctggaag gacagaccga aaggagtttg tgaggaagaa aaccaaaata aatccatttt
     1981 ccagttccac aaataaagag aagaaaaagc agaagaactt catgatgatg cggtatagcc
     2041 agaatgtccg gtcaaaaaca tcacgctcct tccgggagaa gcagctagca ctgcgagatg
     2101 cacttctgaa aaagaggaaa agaatgaagt aacttgtcaa caagttagcc atttcctgcc
     2161 cagtgctgtg tgtaccagca tgccaaaaat tagtaaatct ttgcttacat taaaaagtca
     2221 aggaacgcta tattttgtaa acca
//
