LOCUS       NM_001191905            3149 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus scratch family transcriptional repressor 2
            (Scrt2), mRNA.
ACCESSION   NM_001191905 XM_345455
VERSION     NM_001191905.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3149)
  AUTHORS   Itoh Y, Moriyama Y, Hasegawa T, Endo TA, Toyoda T and Gotoh Y.
  TITLE     Scratch regulates neuronal migration onset via an
            epithelial-mesenchymal transition-like mechanism
  JOURNAL   Nat Neurosci 16 (4), 416-425 (2013)
   PUBMED   23434913
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JACYVU010000119.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001191905.3.
            
            On Nov 8, 2022 this sequence version replaced NM_001191905.1.
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132262,
                              SAMD00132270 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-390               JACYVU010000119.1  14236451-14236840
            391-3149            JACYVU010000119.1  14247630-14250388
FEATURES             Location/Qualifiers
     source          1..3149
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q41"
     gene            1..3149
                     /gene="Scrt2"
                     /gene_synonym="RGD1564796"
                     /note="scratch family transcriptional repressor 2"
                     /db_xref="GeneID:366229"
                     /db_xref="RGD:1564796"
     exon            1..390
                     /gene="Scrt2"
                     /gene_synonym="RGD1564796"
                     /inference="alignment:Splign:2.1.0"
     CDS             258..1175
                     /gene="Scrt2"
                     /gene_synonym="RGD1564796"
                     /note="scratch homolog 2, zinc finger protein; scratch
                     family zinc finger 2"
                     /codon_start=1
                     /product="transcriptional repressor scratch 2"
                     /protein_id="NP_001178834.1"
                     /db_xref="GeneID:366229"
                     /db_xref="RGD:1564796"
                     /translation="MPRSFLVKKIKADGFQCSGVPAPTYHPLETAYVLPGTRGPPGDN
                     GYVAHCMPPSGYDGEQKPGLELAPTEPAYPAAASEEYSDPESPQSSLSARYFRGEAAV
                     TDSYSMDAFFISDGRSRRRRAGAGGDAAGAGDGGGGGERAGRSGATAGGGHRHACAEC
                     GKTYATSSNLSRHKQTHRSLDSQLARKCPTCGKAYVSMPALAMHVLTHNLRHKCGVCG
                     KAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKS
                     FALKSYLHKHCEAACVKAAEPPPSAGPAS"
     exon            391..3149
                     /gene="Scrt2"
                     /gene_synonym="RGD1564796"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acagctccag cgaccgcctg tgtgcgcgcc gccgccgccg ccgccgccgc cgccgccgcc
       61 gccgccgccg ccgccgctgc cgcgcccgag cggcaccgga gcccgagccg cgaccgtcgc
      121 caccccgccg gctccgcggc cgcccgcccg ctgggagctg tccagtgctg aagcccgtgc
      181 cgacagccaa tcgcgccggc cggccgcctc ccccaccggg cctccggtgc cccgcgagcc
      241 ccccgcccgg ctgcaccatg ccgcgttcct tcctggtgaa gaagatcaaa gcggatggct
      301 tccagtgcag cggggtgcca gcccccacct accaccccct ggagactgcc tacgtgctgc
      361 ccggtacccg cgggcctccg ggggacaacg gttatgtggc gcactgcatg ccccccagcg
      421 gttatgatgg cgagcagaag cctgggctgg agctggcgcc cacagagccc gcctacccgg
      481 ccgcggcgtc cgaggagtac agcgaccccg agagcccaca gtccagcctg tcggcgcgct
      541 acttccgcgg ggaggcggcc gtgaccgaca gctactccat ggacgccttc ttcatttctg
      601 atgggcgttc gcggcggcgc cgggccgggg ctggcgggga cgcggcaggc gcaggggatg
      661 ggggcggcgg cggggagcgc gcggggcgct cgggggcgac ggcgggaggc gggcaccggc
      721 acgcatgcgc agagtgcggc aagacgtacg ccacgtcgtc gaacctgagc cgccacaagc
      781 agacgcaccg cagcctggac agccagctgg cgcgcaagtg cccgacgtgt ggcaaggcct
      841 acgtgtctat gcccgcgctc gccatgcacg tgctcacgca caacctgcgc cacaagtgcg
      901 gcgtgtgcgg caaggccttc tcccggccct ggttgctcca gggccacatg cgctcgcaca
      961 ccggcgagaa gccctttggt tgcgcgcact gcggcaaggc cttcgccgac cgctccaacc
     1021 tgcgcgcgca catgcagacg cactcggcct tcaagcacta ccgctgccgc cagtgcgaca
     1081 agagcttcgc gctcaagtcc tacctccaca agcactgcga ggctgcctgc gtgaaggccg
     1141 ccgagcctcc gccttccgcc ggcccggcca gctgagcctc tgccatgcgg gatgcccgca
     1201 gaggcttctc ccatccctca gtctgcgtct cccctgcctg cgccctgggt ggggtgggga
     1261 tgaaccctat cttggcctag aactttcttt tcaaccccga ctaagcccac cattcatttc
     1321 ctgcatctga tcttccttcg cacccaccta ctttgtccat tctggccacc actcggacct
     1381 tgaccccatg tctggccttt aaggctccca actcaggcac caggtccgta cctcttccag
     1441 gtcccggcgc tggaagtttc tccggccccg actctaggct gtgttccttc actagatctc
     1501 tcttcgcatt tctcagctga gtcattggcc attcctttat tggagccctc aatctaaacc
     1561 caaatgtacc cttgatttcc tatctgcctc agtttccctg ttcacacagt cctatccttg
     1621 ggtctctgct gaatttctgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gcgcgcgcgc
     1681 gcgcgcgcgc gagctcatgc atgcgtgcag gtgtctgtct gtctgtctgt gtctgtccat
     1741 ccaggaatct aatcttcacc attcttggtg tcatttgcct gtccatccct gagcccttcc
     1801 atgcttgggc cttagctcca gccacttaag cgattccacc tgacattctc agtctaaccg
     1861 gatctctcca gttccttctt ccttctagta gctccccagt cctcagtttt cctagccggg
     1921 aacagacttg ggaggcagcc cagggctctg ccctctcagg tgacccctct tggcccagga
     1981 caattcccgc ctaggcctca ggcctggagc tgcgatttcc cagtttctga gcactttccc
     2041 tcaccccggg cctacaggtt cgcctcggcc attgctagag gacagcctgg agcagcacct
     2101 cacccatgga cacatcccct cgtccggcag ggccccttcc actatttatt tgtgtattta
     2161 tttatttatc tatttattat tctatttaat ctcttggctt cacccaggga ctgtctggct
     2221 tccccagctg gactgggaag tcaaagggca gagtcagcaa ggccgtcgct cgctgctcct
     2281 ccccttatgg gtctagggag aagcccaccc acatcagagc ctgaactcct taggaagagg
     2341 cctggagaaa tggggggagg cggagcctgc tgatcctcat ctggcagggg aggggccatc
     2401 agaaggtcct atttgggggc aggtccccgg ccttctgagc cttccactcc tgtcccagga
     2461 agcccttctg gagcctctcc ctttgtttct tatttattcc tctttcagag ggaccccagg
     2521 ttccagggac cgactgagcc ccggaccccg ctggggcctc tggcctgttc ccgggaggag
     2581 tgctctctcc cggccacgac tatgcaactc tcccgggcag aggggccggg actgccagcc
     2641 aggcgcctat tggccaccac tacctcctcc accgcgcttt tgcatgcccg ggcgaggacc
     2701 gaagcacaca cctccgcgcg caccggcccg gccccctctg ctttaagcac acgcctcttc
     2761 ccacgtccct ctgtgttccc tttgtgggca agagccctgg acgctcagac ctccttcccc
     2821 tccccctagc cacaaaagag ggtggagact gcagaccgcc ccaggttgct ctctagggct
     2881 tcggaggggg tggagcttca ttgagcccca ggctcccgga gggaggctgc agagatggtg
     2941 ggagagagag gggtcaccag aagcaattat ggagggtgct gaccctgtaa ataggaactt
     3001 ctgacagcaa taatttccca tgcatgctaa atcttttgga ccctcccttg tcgtaccccc
     3061 aactcacccc ctcaccccta ttcctttccc atcttcagca gtattacttg taacgcaatt
     3121 cagggatatt aaagggactt tggccactc
//
