LOCUS       NM_001130570            1725 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus scratch family transcriptional repressor 1
            (Scrt1), mRNA.
ACCESSION   NM_001130570 XM_001075117 XM_345848
VERSION     NM_001130570.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1725)
  AUTHORS   Itoh,Y., Moriyama,Y., Hasegawa,T., Endo,T.A., Toyoda,T. and
            Gotoh,Y.
  TITLE     Scratch regulates neuronal migration onset via an
            epithelial-mesenchymal transition-like mechanism
  JOURNAL   Nat Neurosci 16 (4), 416-425 (2013)
   PUBMED   23434913
REFERENCE   2  (bases 1 to 1725)
  AUTHORS   Jolma,A., Yan,J., Whitington,T., Toivonen,J., Nitta,K.R.,
            Rastas,P., Morgunova,E., Enge,M., Taipale,M., Wei,G., Palin,K.,
            Vaquerizas,J.M., Vincentelli,R., Luscombe,N.M., Hughes,T.R.,
            Lemaire,P., Ukkonen,E., Kivioja,T. and Taipale,J.
  TITLE     DNA-binding specificities of human transcription factors
  JOURNAL   Cell 152 (1-2), 327-339 (2013)
   PUBMED   23332764
REFERENCE   3  (bases 1 to 1725)
  AUTHORS   Nakakura,E.K., Watkins,D.N., Schuebel,K.E., Sriuranpong,V.,
            Borges,M.W., Nelkin,B.D. and Ball,D.W.
  TITLE     Mammalian Scratch: a neural-specific Snail family transcriptional
            repressor
  JOURNAL   Proc Natl Acad Sci U S A 98 (7), 4010-4015 (2001)
   PUBMED   11274425
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001130570.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB546540.1, SRR26643298.40617.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840105, SAMN12840116
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-401               JAXUCZ010000007.1  110124890-110125290 c
            402-1725            JAXUCZ010000007.1  110121640-110122963 c
FEATURES             Location/Qualifiers
     source          1..1725
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..1725
                     /gene="Scrt1"
                     /note="scratch family transcriptional repressor 1"
                     /db_xref="GeneID:366951"
                     /db_xref="RGD:1306236"
     exon            1..401
                     /gene="Scrt1"
                     /inference="alignment:Splign:2.1.0"
     CDS             287..1333
                     /gene="Scrt1"
                     /note="scratch homolog 1, zinc finger protein; scratch
                     family zinc finger 1"
                     /codon_start=1
                     /product="transcriptional repressor scratch 1"
                     /protein_id="NP_001124042.1"
                     /db_xref="GeneID:366951"
                     /db_xref="RGD:1306236"
                     /translation="MPRSFLVKKVKLDTFSSADLDSSYGRARSDLGVRLQDKGYLSDY
                     VGPASVYDGDAEAALLKGPSPEPMYAAAVRGELGPAASGSAPPPTPRPELATAAGGYI
                     NGDAAVSEGYAADAFFITDGRSRRKAANANAASAPSTASVAAPDSDAGGGGGPGTRGS
                     GSGSASRGGTRVGAGTEARAGPGATGAGGRHACGECGKTYATSSNLSRHKQTHRSLDS
                     QLARRCPTCGKVYVSMPAMAMHLLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPF
                     GCAHCGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYESACFKGGASG
                     PATPAPPQLSPVQA"
     exon            402..1725
                     /gene="Scrt1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggaaggaag gaaggaaaga agagaaaaga agagaagagg aggaaggaag gaaagaagga
       61 aggaaggaga gagagagaga aagagaggag ggatccggag aggaagaaga aaagacgcag
      121 ggcagaaaga agagagagga ccacactcgc cgagcagcat ccacaggcca gactggggac
      181 agtgctgctt ccaccgctcc tcggatggtg acggggcctc gccgcggacg cagtccccct
      241 gagccccggc tctgcaggcc ctcactgccg gagccccgca ggaatcatgc ccaggtcctt
      301 cctggttaag aaggtcaaac ttgacacatt ctcttcggca gacctcgaca gctcctacgg
      361 gcgcgcccgc agcgatctcg gagtgcgact gcaagataaa ggatacctca gtgactacgt
      421 ggggcctgcg tcggtctacg atggcgacgc tgaggcggca ttgctcaaag ggccatcccc
      481 ggagcctatg tatgctgcgg ctgtgcgggg agagctgggt cccgcggcct ctggctcagc
      541 accgccgccc acccctcgcc cagagctggc tactgctgct ggcggctaca tcaacggcga
      601 cgcggcggtc agcgaaggct acgcggccga cgccttcttc atcactgacg ggcgctcacg
      661 ccgtaaggct gctaatgcca acgctgcctc ggccccctcg acagcctcgg tggcagcccc
      721 cgacagcgac gctggaggtg ggggcgggcc gggcacgcga ggctctggat cagggtccgc
      781 tagtcggggt ggtacgcgcg tgggggcggg caccgaggcg cgtgcggggc cgggagccac
      841 gggcgctggt ggccggcacg cgtgcggaga gtgtggcaaa acttacgcca cgtcgtcgaa
      901 cctgagccgc cacaagcaaa cgcaccgcag cttggacagc cagctggcaa ggcgttgccc
      961 aacgtgtggc aaggtgtacg tgtccatgcc ggccatggct atgcacctgc tcacgcacga
     1021 cctgcgccac aagtgcggcg tgtgcggcaa agccttctcc cggccctggc tgctgcaggg
     1081 ccatatgcgc tcgcacacgg gcgagaaacc cttcggctgt gcgcactgcg gcaaggcctt
     1141 cgcagaccgc tccaacctgc gcgcacacat gcagacgcac tccgccttca agcacttcca
     1201 gtgcaagcgc tgcaagaaga gcttcgcgct caagtcttat ctcaacaagc actacgagtc
     1261 agcctgcttc aagggcggcg ccagcggccc cgcaacccct gcgccgccgc agctcagccc
     1321 ggttcaagcc tagggcagcg gggcctccgc cagccaggtc ggctctcagc aatacgggcc
     1381 cccagggaag tctccgctgg cgtccgggcg gaggggctgg agggcaggcc cctcctcaca
     1441 gcaatagggg cagggagccg gccccacccc gccccgctcg ccaggagcct tgccagcccc
     1501 ttcaagcaat agggtcccga ggggagaccc atcccgaaaa ccctcccctc tcctccaggg
     1561 tgccccaggc tttctcccag caatagggtc gaccagaccc agaaccgaac ctcatctctt
     1621 agttgggtct ctgaagacag gggtgaggtg aggtaaggag cgccctcctc cctcctctgc
     1681 gcctctggat cgcgttgcag agactcaggt cttccccacc ccttc
//
