LOCUS       XM_039105165             812 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus secernin 3 (Scrn3), transcript variant
            X4, mRNA.
ACCESSION   XM_039105165
VERSION     XM_039105165.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039105165.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..812
                     /gene="Scrn3"
                     /note="secernin 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 29 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:311731"
                     /db_xref="RGD:1305064"
     CDS             119..679
                     /gene="Scrn3"
                     /codon_start=1
                     /product="secernin-3 isoform X4"
                     /protein_id="XP_038961093.1"
                     /db_xref="GeneID:311731"
                     /db_xref="RGD:1305064"
                     /translation="MQPYSCDTFVALPPATVGNRVIFGKNSDRLFDEVQEVIYFPAAV
                     HSDLEKRLKCTYIEVDQVPETYAVVLSRPAWLWGAEMGANEHGVCIGNEAIWGREDIS
                     KEEALLGMDLVRLGLERADTAEKALNVIVDLLGKYGQGGNCAEGEEFSYYNSFLIADR
                     NEAWILETSGKFWAAEKVQELYHVSS"
ORIGIN      
        1 ttccgaggtc ggaggtgact acttccgtag attagcgtta ggggccgccc ctcctgctct
       61 cttccggtag ttgcttctcg tcgctgttac ccggcgtccg cgcgtgcgca gcagagaaat
      121 gcagccctat tcctgtgaca cgtttgtggc attacctcca gcaacagttg gaaatagggt
      181 tatttttgga aaaaattcag acagactctt tgatgaagta caagaagtaa tttactttcc
      241 agctgcagtt catagtgatc tggaaaaacg tctcaagtgt acttatatag aagtcgatca
      301 ggttcctgaa acatatgctg ttgttcttag tcgcccagct tggctgtggg gggcagaaat
      361 gggtgccaat gagcatggag tctgcattgg gaatgaggct atctggggaa gagaagatat
      421 ttctaaggag gaggcacttc tgggcatgga ccttgtcagg ctcggccttg aaagagctga
      481 tacagctgaa aaagctctca acgtcattgt tgacttatta ggaaaatatg gccaaggtgg
      541 aaactgtgca gagggtgaag aattcagcta ttataacagt ttcctgatag ctgacaggaa
      601 tgaagcctgg attctggaga cttcagggaa gttctgggca gcagagaaag tccaagaatt
      661 gtatcacgtg agttcgtaat atttccaatc agttttccat aacaaccaag attgaccggg
      721 agcatccaga catgaggaac tatgctaagc agaggggctg gtgggatggc aaagaggagt
      781 tcgattttgc tgcagcgtat tcttacactg ac
//
