LOCUS       NM_001399566            3065 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus secernin 3 (Scrn3), mRNA.
ACCESSION   NM_001399566 XM_006234358
VERSION     NM_001399566.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3065)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 12, 2022 this sequence version replaced XM_006234358.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.13295.1,
                                           SRR26643294.13528.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-48                JAXUCZ010000003.1  78596398-78596445
            49-209              JAXUCZ010000003.1  78599132-78599292
            210-391             JAXUCZ010000003.1  78601103-78601284
            392-588             JAXUCZ010000003.1  78602032-78602228
            589-798             JAXUCZ010000003.1  78604948-78605157
            799-961             JAXUCZ010000003.1  78613301-78613463
            962-1136            JAXUCZ010000003.1  78614506-78614680
            1137-3065           JAXUCZ010000003.1  78619204-78621132
FEATURES             Location/Qualifiers
     source          1..3065
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q23"
     gene            1..3065
                     /gene="Scrn3"
                     /note="secernin 3"
                     /db_xref="GeneID:311731"
                     /db_xref="RGD:1305064"
     exon            1..48
                     /gene="Scrn3"
                     /inference="alignment:Splign:2.1.0"
     exon            49..209
                     /gene="Scrn3"
                     /inference="alignment:Splign:2.1.0"
     CDS             51..1307
                     /gene="Scrn3"
                     /codon_start=1
                     /product="secernin-3"
                     /protein_id="NP_001386495.1"
                     /db_xref="GeneID:311731"
                     /db_xref="RGD:1305064"
                     /translation="MQPYSCDTFVALPPATVGNRVIFGKNSDRLFDEVQEVIYFPAAV
                     HSDLEKRLKCTYIEVDQVPETYAVVLSRPAWLWGAEMGANEHGVCIGNEAIWGREDIS
                     KEEALLGMDLVRLGLERADTAEKALNVIVDLLGKYGQGGNCAEGEEFSYYNSFLIADR
                     NEAWILETSGKFWAAEKVQGVRNISNQFSITTKIDREHPDMRNYAKQRGWWDGKEEFD
                     FAAAYSYTDTATMMTSPSRYCQGHKLLNKHKGNITYETMVEILRDRPSGINMKGEFLT
                     TASMVSILPQDPSLPCIHLLTGTPHPERSVFKPFIFVPHVSPLLDTKSPTFELERPVA
                     KKPYVKPDRRHLLYQNHQQALEMISNHKEKGKTILDNVRKLEKEVFEEIESILQNRHL
                     DMDKTVNLFPQYVRDEIKIYQPNISS"
     exon            210..391
                     /gene="Scrn3"
                     /inference="alignment:Splign:2.1.0"
     exon            392..588
                     /gene="Scrn3"
                     /inference="alignment:Splign:2.1.0"
     exon            589..798
                     /gene="Scrn3"
                     /inference="alignment:Splign:2.1.0"
     exon            799..961
                     /gene="Scrn3"
                     /inference="alignment:Splign:2.1.0"
     exon            962..1136
                     /gene="Scrn3"
                     /inference="alignment:Splign:2.1.0"
     exon            1137..3065
                     /gene="Scrn3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttgcttct cgtcgctgtt acccggcgtc cgcgcgtgcg cagcagagaa atgcagccct
       61 attcctgtga cacgtttgtg gcattacctc cagcaacagt tggaaatagg gttatttttg
      121 gaaaaaattc agacagactc tttgatgaag tacaagaagt aatttacttt ccagctgcag
      181 ttcatagtga tctggaaaaa cgtctcaagt gtacttatat agaagtcgat caggttcctg
      241 aaacatatgc tgttgttctt agtcgcccag cttggctgtg gggggcagaa atgggtgcca
      301 atgagcatgg agtctgcatt gggaatgagg ctatctgggg aagagaagat atttctaagg
      361 aggaggcact tctgggcatg gaccttgtca ggctcggcct tgaaagagct gatacagctg
      421 aaaaagctct caacgtcatt gttgacttat taggaaaata tggccaaggt ggaaactgtg
      481 cagagggtga agaattcagc tattataaca gtttcctgat agctgacagg aatgaagcct
      541 ggattctgga gacttcaggg aagttctggg cagcagagaa agtccaagga gttcgtaata
      601 tttccaatca gttttccata acaaccaaga ttgaccggga gcatccagac atgaggaact
      661 atgctaagca gaggggctgg tgggatggca aagaggagtt cgattttgct gcagcgtatt
      721 cttacactga cacggccaca atgatgactt caccaagcag atactgccag ggccacaagc
      781 ttctgaataa acacaaagga aacataactt atgaaacgat ggtggaaatt cttcgcgaca
      841 gacccagtgg catcaacatg aagggagaat tcctgaccac cgcaagcatg gtttccattt
      901 taccccagga tcccagcctt ccctgcattc acctccttac agggactcca caccctgaga
      961 ggtctgtttt taagcctttc atatttgtac cacatgtttc gccactgttg gatacaaaat
     1021 caccaacatt tgaacttgag aggcccgtgg caaagaagcc atatgtcaag cccgacagaa
     1081 gacacctact ctaccaaaac catcaacagg ccttggaaat gataagtaac cataaggaaa
     1141 aaggcaagac aatattggac aacgtgagga agctggaaaa agaagtgttt gaagagatag
     1201 aatcaatcct ccaaaacaga catcttgaca tggataaaac tgttaatctc tttcctcaat
     1261 atgtaagaga tgaaattaaa atttatcagc caaatattag ttcttaatga tcatttaagt
     1321 ggccagaaac cttcctcact gccctggata tgatacttct ttaaggagac ctgactgttc
     1381 cctcagtatc ctgtggtatt ctggctgcta agaccacagt attagcttcg gttggataaa
     1441 gcctgaaaca taagcatgac gcatgtctgt gctatcatta tgtattataa agaaagctca
     1501 gggtttttcc taagcaatgg acagtatgtc aagtgcattt tttgtgcttt aggcaaatat
     1561 tgaccagctt caacagatgt ccagatttac gctgtttgac actgccacac attctgcaga
     1621 agccctttca ttaaactcaa aagtgacctt tgtcaggact tggctgagtg gcaaacttac
     1681 agctccaact gtttggcctt ttctctccct catcccctca gaagccatca ttctgtttgt
     1741 tatctgggtc attgtatctt acagtaggtc tgttgggact ggcttcttca gcacacagct
     1801 ctcatcatgc ctctctatgc cacggctgcc cttccttctt aactcgaaca gcgctttcag
     1861 atggctgtgt caccactgaa gagccttctg ggtgcttcca aattttggca attgcgagta
     1921 aacatccatg tgcaagttgc tgtgcagttc taagcattcg acccgttttg gatggaactg
     1981 aggtattgca gaccctaggg tgcgagtgag aaactgccat gctcttctac accctgcagc
     2041 ggcactgttc cgtgtcctgg tcagtgtgtt gggatttggt cgttctgagt gcagcttctc
     2101 acctatgtag gtgacaggga tagaggcgat ggctttgcac tttgtttttc agtggatctg
     2161 taactccaat cagcataaga cgctgaggtt ttctccattt tccatctgtt caccttctct
     2221 gatgagttgt ggagatcttg gcccattctt taatcaggtt tttatttatt tatcttacta
     2281 aggagcctaa acttttttct ttaatttaaa acttttattt tattgtatat gcgtgttttg
     2341 cctccatgta caaagcacat gcctggtgcc ctcagagcgt gtgaactcct cttgtactgg
     2401 agttacagat ggctatgagc catcatgtgg gtgccaggca ccaaacctag atcctgagcc
     2461 atcgctccag cccctcccac cactcatgtc taaacctctt tgaatctcat tgttcttcag
     2521 gtaaagtcgc agtccttaca gacgccaaca atagatgctt gcttacctgc ttgtgcctcc
     2581 ctttcataga agtagttcat tttagtctta gaacttgcta acaatcgagt tccctaggcg
     2641 ttttcctccc atataatcaa gatcatatgt ggctccgaat ctgtcatgca tttaattatc
     2701 tatctcataa gagaatagag aagttccacg aaagcccact gttcagtatc atagttggat
     2761 gctttgatat tatataatat ttgctaaatg aacattcaga tgaaaagaat ttatacagac
     2821 gtgtaaggtt gagtaaatta gctaatttat ctgtgtaact tagtagccat ggaagtttcc
     2881 aacccagaaa atacaaggat tatatggata tgtgagttaa cttgtacaga ttttcactgc
     2941 agtagacgca gtgtggatac tcatgttggt aattaatgcc ttggagtgtg ttttagaaat
     3001 tttaatgttt tcttaaattt caactgttgt gaaaataaaa agtaataaac tcattttaca
     3061 gaaaa
//
