LOCUS       NM_001025063            1584 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus secernin 1 (Scrn1), mRNA.
ACCESSION   NM_001025063 XM_578274
VERSION     NM_001025063.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1584)
  AUTHORS   Lindhout,F.W., Cao,Y., Kevenaar,J.T., Bodzeta,A., Stucchi,R.,
            Boumpoutsari,M.M., Katrukha,E.A., Altelaar,M., MacGillavry,H.D. and
            Hoogenraad,C.C.
  TITLE     VAP-SCRN1 interaction regulates dynamic endoplasmic reticulum
            remodeling and presynaptic function
  JOURNAL   EMBO J 38 (20), e101345 (2019)
   PUBMED   31441084
REFERENCE   2  (bases 1 to 1584)
  AUTHORS   Hoja,M.R., Wahlestedt,C. and Hoog,C.
  TITLE     A visual intracellular classification strategy for uncharacterized
            human proteins
  JOURNAL   Exp Cell Res 259 (1), 239-246 (2000)
   PUBMED   10942595
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079152.1.
            
            On Jun 25, 2005 this sequence version replaced XM_578274.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079152.1, SRR8487227.329367.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760396, SAMN12840109
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q24"
     gene            1..1584
                     /gene="Scrn1"
                     /note="secernin 1"
                     /db_xref="GeneID:502776"
                     /db_xref="RGD:1560999"
     exon            1..173
                     /gene="Scrn1"
                     /inference="alignment:Splign:2.1.0"
     exon            174..333
                     /gene="Scrn1"
                     /inference="alignment:Splign:2.1.0"
     CDS             175..1419
                     /gene="Scrn1"
                     /codon_start=1
                     /product="secernin-1"
                     /protein_id="NP_001020234.1"
                     /db_xref="GeneID:502776"
                     /db_xref="RGD:1560999"
                     /translation="MSGAPPSYSFVALPPRAKDGLVVFGKNSARPRDEVQEVVYFPAV
                     DHEAESKVECTYISIDQVPRTHAIVISRPAWLWGAEMGANEHGVCIANEAINAREPAA
                     ETEALLGMDLVRLGLERGTTAKEALDIIVSLLDEHGQGGNYYEDAHSCHSFQSAYLLV
                     DRDEAWVLETVGKYWAAERITEGVRCICNHLSLTTKMDEEHPELRTYAQSQGWWTGED
                     EFNFAQVFSPADDHLDCCAGKDSLEKQEESITVQTMINILRDKASGVCIDSESFLTTA
                     SIVSVLPQNRSSPCIHYFTGTPDPSRSIFKPFIFVDDVKLVPKAQSPCFGDDDPAKKE
                     PRFQEKPDRRHELYKAHEWARAVIESDQEQGRTLRKTMLELEKQGLEAMEEILSSPEP
                     PDPAEVGDLFYDCVDTEMKFFK"
     exon            334..515
                     /gene="Scrn1"
                     /inference="alignment:Splign:2.1.0"
     exon            516..718
                     /gene="Scrn1"
                     /inference="alignment:Splign:2.1.0"
     exon            719..913
                     /gene="Scrn1"
                     /inference="alignment:Splign:2.1.0"
     exon            914..1079
                     /gene="Scrn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1080..1260
                     /gene="Scrn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1261..1516
                     /gene="Scrn1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaccaaacca gctgttagca gggggctgga gagcctggag tctggggagc tggagcgcca
       61 gcggtcttct gcgctactga tgcggaggct gtaacctagc tgccgcagcg cccccaactc
      121 cgcaatcgca gcatcagcac cgctggaccc ggctggagcc ggctgcttgg caggatgtct
      181 ggtgcacctc cgagttactc cttcgtggct ttgccacctc gagccaagga tggtctggtg
      241 gtgtttggga aaaattcagc gcggcccaga gatgaagtgc aggaggtcgt gtacttccca
      301 gctgttgacc atgaagctga gagcaaagtt gagtgcactt acatctcaat tgaccaagtt
      361 cccaggaccc acgccatagt gataagcaga cctgcctggc tctggggggc agaaatggga
      421 gccaatgaac atggggtatg catagccaat gaagccatca atgccagaga accagctgct
      481 gagacagaag ccttactggg gatggatctg gtcaggcttg gtttagaacg agggacaaca
      541 gctaaagaag ccttagacat catcgtctcc ttattggatg agcatggaca aggtggaaat
      601 tattatgaag atgcccattc ctgccatagc ttccaaagtg catatctgct ggtggatcgt
      661 gatgaagcct gggtgctgga gactgtaggg aagtattggg ctgctgagag aatcacagag
      721 ggagtgaggt gcatttgcaa tcacctttca ctcactacta agatggacga agaacaccca
      781 gaactcagga cgtatgctca gagtcaaggc tggtggaccg gagaggatga attcaatttt
      841 gcccaagtct tttctcccgc tgatgaccat ttggactgct gtgcaggcaa agacagctta
      901 gaaaagcaag aagaaagcat cacggtgcag acgatgatta acatcttacg agataaagcc
      961 agtggcgttt gcatagattc tgagtctttc cttaccacag ccagtatagt gtctgtcctg
     1021 cctcagaaca gaagttcacc gtgcattcac tacttcaccg ggaccccaga tccttccagg
     1081 tccatattca agcctttcat ctttgttgat gatgtaaaac ttgtccccaa agcacagtcg
     1141 ccctgttttg gggacgatga cccagccaaa aaggaacctc ggttccagga gaagccagac
     1201 cggcggcacg agctgtacaa ggcacatgag tgggcacgtg ctgtcatcga gagcgaccag
     1261 gagcaaggcc gcacactgag gaagaccatg ctggagttgg agaagcaagg cttggaggcc
     1321 atggaagaga ttctgagcag ccctgaaccc ccagaccctg ctgaggtggg ggaccttttc
     1381 tatgactgtg tggacaccga gatgaaattc tttaagtgat gtaagcaccc tcgcccttac
     1441 ttaaaacttc ccacccgact aaattaccag cagataaaca ctcttctgtt tgagtaaaac
     1501 gagagttacc atgttaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1561 aaaaaaaaaa aaaaaaaaaa aaaa
//
