LOCUS       XM_039079545            5430 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus scribble planar cell polarity protein
            (Scrib), transcript variant X6, mRNA.
ACCESSION   XM_039079545
VERSION     XM_039079545.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039079545.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5430
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5430
                     /gene="Scrib"
                     /gene_synonym="RGD1565055"
                     /note="scribble planar cell polarity protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 36 ESTs, 5 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     51 samples with support for all annotated introns"
                     /db_xref="GeneID:362938"
                     /db_xref="RGD:1565055"
     CDS             355..5199
                     /gene="Scrib"
                     /gene_synonym="RGD1565055"
                     /codon_start=1
                     /product="protein scribble homolog isoform X6"
                     /protein_id="XP_038935473.1"
                     /db_xref="GeneID:362938"
                     /db_xref="RGD:1565055"
                     /translation="MLKCIPLWRCNRHVESVDKRHCSLQVVPEEIYRYSRSLEELLLD
                     ANQLRELPKPFFRLLNLRKLGLSDNEIQRLPPEVANFMQLVELDVSRNDIPEIPESIK
                     FCKALEIADFSGNPLSRLPDGFTQLRSLAHLALNDVSLQALPGDVGNLANLVTLELRE
                     NLLKSLPASLSFLVKLEQLDLGGNDLEVLPDTLGALPNLRELWLDRNQLSALPPELGN
                     LRRLVCLDVSENRLEELPVELGGLALLTDLLLSQNLLQRLPEGIGQLKQLSILKVDQN
                     RLCEVTEAIGDCENLSELILTENLLTALPRSLGKLTKLTNLNVDRNHLEVLPPEIGGC
                     VALSVLSLRDNRLAVLPPELAHTAELHVLDVAGNRLRSLPFALTHLNLKALWLAENQA
                     QPMLRFQTEDDAQTGEKVLTCYLLPQQPLPSLEDPGQQSSPSESCSDAPLSRVSVIQF
                     EDPLEGEEDAEEAAAEKRGLQRRATPHPSELKVMKRGIEERRNEAFVCKPDPSPPSPS
                     EEERRLSAESALSGNSVPSASTASDGEPETLPAEVQGLGQQEAMPGQEEYPEEDYNEP
                     TVHFAEDTLIPREDGEGEEGQPEAPWPLPSGRQRLIRKDTPHYKKHFKISKLPQPEAV
                     VALLQGVQTDREGPTAGWHNGPHTPWAPRAHEEEEEEENRDEEEGEASMEEDDKEEAV
                     ASAPSVKGVSFDQANNLLIEPARIEEEELTLTIVRQTGGLGISIAGGKGSTPYKGDDE
                     GIFISRVSEEGPAAHAGVRVGDKLLEVNGVALQDAEHHEAVEALRGAGAAVQMRVWRE
                     RMVEPENAVTITPLRPEDDYSPREWRGGGLRLPLLQPETPVPLRQRHAACLVRSEKGL
                     GFSIAGGKGSTPYRAGDAGIFISRIAEGGAAHRAGTLQVGDRVLSINGVDMTEARHDH
                     AVSLLTAASTTISLLLERETGGAYPPSPPPHSSSTPTATVAATMTTAIPGEPLLPRLS
                     PSLLATALEGPYPVEEICLPRAGGPLGLSIVGGSDHSSHPFGVQDPGVFISKVLPRGL
                     AARCGLRVGDRILAVNGQDVREATHQEAVSALLRPCLELCLLVRRDPPPPGMRELCIQ
                     KAPGEKLGISIRGGAKGHAGNPCDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQ
                     QSLLGLTHAEAVQLLRSVGDTLTVLVCDGFDTSTTTALEVSPGVIANPFAAGLGHRNS
                     LESISSIDRELSPEGPGKEKELASQTLPWEPESAETTGRNQEPLKLDYRVLAAVPSAG
                     SLQRPPSPDELPANVKQAYRAFAAVPTVHPPENSATQPPTPGPAASPEQLSFRERQKY
                     FELEVRVPQAEGPPKRVSLVGADDLRKMQEEEARKLQQKRAQMLREEAVTSGPDTGLA
                     SDRESLDDEQEAEQPWAGPSHAGGLSPSSPTPLGGSAPVRTAKAERRHQERLRMQSPE
                     LPAPERALSPAERRALEAEKRALWRAARMKSLEQDALRAQMVLSKSQEGRGKRGPLER
                     LAEAPSPAPTPSPTPLEDFGLQTSTSPGRLPLSGKKFDYRAFAALPSSRPVYDIQSPD
                     FVEELRTLDPSPSPGPQEEDGEVALVLLGRPSPGTVGPEDMTLCSSRRAMRPGRRGLG
                     PVPS"
ORIGIN      
        1 gggcggttgt cgcgggcagc ggcggcggtt ccggctgcgg tgctgcgggc ggatgagctg
       61 ctaggtgagc aggccgggcg ggatgcggag ccgccgccgc gcccccaccg cctaagaaag
      121 cgctgccggg tcaggccgcg ctgccagctg tgtgccgcca ttcgagccta cagctcgtat
      181 tgaacgcggg ccgagcctag cgccgacccc ggccgcagtc cgggtccggg ctgcccgccc
      241 cacccccgcg cgcgccgctc cgcccgcgct cggcgctcat gcgggccgag ccccgccccc
      301 cggcccgagc ccgccgagcg cctcccgagc ccgcgctcac tgccggcccg catcatgctg
      361 aagtgcatcc cgctctggcg ttgcaaccgg cacgtggagt cggtggataa gcggcattgc
      421 tcgctgcagg ttgtaccaga ggagatttac cgctacagtc gtagcctgga ggagctgctc
      481 ctcgacgcca accagctgcg cgagctacct aagcccttct tccggctatt gaacttgcgg
      541 aagttgggcc tcagtgacaa cgagatccag cggctgcctc ctgaagtggc taacttcatg
      601 caactggtgg agctggatgt gtcccggaat gatatccccg agatacctga gagcataaag
      661 ttctgtaagg ctctggagat tgcagacttc agcgggaacc ccctctccag gcttcccgat
      721 ggcttcacac agctgcgcag cctggctcac ctggctctga atgatgtgtc cctgcaggca
      781 ctgcctggag atgtgggcaa cctggccaat ttggtgacct tggaactgcg ggagaacctg
      841 cttaaatctc tccctgcgtc cctgtctttc cttgtgaagc tagaacagct ggatctggga
      901 ggcaatgacc tggaagtgct gcctgacact ctgggggctc tgcctaacct acgggagctg
      961 tggctagacc gaaaccaact gtcagcgctg cccccggagc taggcaacct gcggcggctg
     1021 gtatgcctgg acgtgtcaga gaacaggctg gaggagctac ccgtggagct gggtgggctg
     1081 gcactgctca cagatctgct gctttcccag aatttgcttc agcggctgcc agagggcatt
     1141 ggtcagctga agcagctgtc tatcctgaag gtggaccaga accggctatg tgaggtcact
     1201 gaggccatag gggactgtga gaacctctcg gaactgatcc tcacagagaa cctgttaacg
     1261 gctttacccc gctctctggg caaactgacc aaactgacga accttaatgt ggaccggaat
     1321 catcttgagg tgctgccacc tgaaatcgga ggctgcgtag cccttagtgt cctctccttg
     1381 agagacaatc gcctggctgt ccttcctcct gagcttgccc atacagctga gctgcatgtg
     1441 cttgacgtag ctgggaaccg gctgcggagt ctgccgtttg cactcaccca cctcaacctc
     1501 aaggcactgt ggctggctga gaaccaggca caacccatgc tccgcttcca gaccgaggat
     1561 gatgcccaaa ctggtgaaaa ggtgcttacc tgctacctgc tgccccagca gcccttgcca
     1621 agtctcgaag accctggaca gcagagcagt ccctcagaga gctgcagtga tgcccctctg
     1681 agccgtgtca gtgtcatcca gtttgaggac ccccttgaag gtgaagaaga tgctgaggaa
     1741 gctgcagccg agaagcgggg cctacagcgt agggccacac ctcatcccag tgagctcaag
     1801 gtgatgaaga ggggcattga ggagcgccga aacgaggcct tcgtctgcaa gcctgacccc
     1861 agcccaccct caccttcaga ggaggagagg aggctgagcg cagagtctgc cctgagtggt
     1921 aactctgtcc cgtcggcaag cacagcctcc gatggtgaac ctgagaccct cccggctgag
     1981 gtacaagggc taggccagca agaggccatg cctggtcagg aagagtatcc agaggaagac
     2041 tataatgagc ccacagtgca ctttgcagag gacacactga tccctaggga agatggtgaa
     2101 ggtgaagagg gacagcccga ggctccctgg ccgctgccca gtggccgaca gaggctcatc
     2161 cgcaaagaca caccccacta caagaagcac ttcaagatct ctaagctccc acagcccgaa
     2221 gctgttgtgg ccctgctgca aggggtgcag acagacaggg agggccccac tgcgggttgg
     2281 cacaatggcc cacacacacc ttgggctcct cgagcccatg aggaggaaga ggaggaggag
     2341 aacagggatg aagaagaagg cgaggccagc atggaagaag atgacaaaga agaggctgtg
     2401 gcttctgctc cctctgtcaa gggggtgtcg tttgaccagg ccaataacct gctgatagag
     2461 cctgctcgca ttgaggagga agagttaaca ctcacgatcg tgcggcagac agggggcctg
     2521 ggcatcagca tcgcaggggg aaagggctct accccctaca aaggagacga tgagggcatt
     2581 ttcatctctc gagtgtctga ggagggtcct gcagcccatg ctggagtccg agtcggtgac
     2641 aaacttctcg aggtgaatgg tgtggccttg caagatgcag aacaccatga ggctgtggaa
     2701 gcacttcggg gggccggtgc tgctgtgcaa atgcgagtgt ggagggaaag aatggtggag
     2761 cctgagaatg cagtcaccat cacccctctc cgccctgaag atgactatag tccccgggag
     2821 tggcggggag ggggcctgcg cctgcccctg cttcagccag agactcctgt acccctccgc
     2881 cagcgccacg ctgcctgtct tgtgcgcagt gaaaaggggc tgggcttcag cattgctggt
     2941 gggaagggct ccacacctta ccgggctggc gatgcgggca tttttatatc tcgcattgca
     3001 gagggagggg ctgcccaccg ggcaggcact ctacaggttg gcgaccgtgt tctctcgatc
     3061 aatggagtgg acatgactga ggcacggcac gatcatgctg tctccctgct gactgctgct
     3121 tccactacca tctccctgct tctggagagg gaaactggag gggcttatcc acccagcccc
     3181 ccaccacatt cctcttcaac ccctactgct actgttgctg ctaccatgac cactgccatc
     3241 cccggagaac ctctgctacc tagactgtcc cctagcctct tggccactgc cttggaagga
     3301 ccataccctg tggaggaaat ttgcctgccc agggctggtg gcccattggg gcttagcatt
     3361 gtaggaggtt ctgatcactc cagccatccg tttggtgtcc aggatcctgg tgtattcatc
     3421 tccaaggtgc ttcctcgggg ccttgctgct cgctgtggcc ttcgggttgg ggaccgcatc
     3481 ctagcagtga atgggcagga tgttcgggag gccacacatc aggaggcagt tagtgccctg
     3541 ctcaggccct gcctggagct gtgtctgctt gtacggaggg acccaccacc cccaggcatg
     3601 cgggaactct gcatccagaa ggcccctgga gagaagctgg gtatcagcat ccgaggaggc
     3661 gccaagggtc atgcggggaa cccgtgtgat cctacagatg agggcatctt tatctccaag
     3721 gtgagcccta caggagctgc cgggcgtgac gggcggctgc gtgtggggct gcggctgcta
     3781 gaagtgaacc aacagagcct cctgggcctc acgcatgctg aggcggtgca gctgctgcgc
     3841 agcgtgggtg acaccctcac cgtgcttgtc tgtgatggct ttgacaccag caccaccaca
     3901 gccctggagg tgtccccagg tgtcatagcc aacccatttg cagcaggcct tggccacagg
     3961 aacagtctgg aaagcatttc atccattgac cgggagctga gtcctgaagg cccaggcaag
     4021 gagaaagagc tggccagtca aaccctaccc tgggagcctg agtctgcaga gaccacgggt
     4081 cggaatcaag agcccctcaa gctggattac cgtgtcctgg ctgctgtgcc cagtgctggg
     4141 agtttgcaaa gaccgccctc ccctgacgaa ctgccagcca atgtgaagca ggcgtacagg
     4201 gccttcgcag ctgtgcccac cgtacatcct cctgagaaca gtgctaccca gcctccaaca
     4261 cctggtcccg cagcctcccc agagcagctg tccttccgtg aacgacaaaa gtactttgag
     4321 ctggaggtac gggtgcctca agcagagggt cccccaaagc gtgtgtccct ggtgggtgct
     4381 gacgacttgc ggaagatgca ggaggaggaa gctcgcaagc tgcagcagaa gagggcacag
     4441 atgcttcggg aagaggcagt aacctcagga cctgacacgg ggctcgcctc agacagggag
     4501 tccctggatg atgagcagga ggctgagcag ccctgggccg ggccaagcca tgcaggaggc
     4561 ctcagcccct cttcacccac acccctggga ggcagcgccc ctgtgaggac agccaaagct
     4621 gagcgacgtc atcaggagcg gctgcgtatg cagagccctg agctgcccgc cccagagcgg
     4681 gccctgtctc ctgcagagcg aagggctcta gaggccgaga agcgagcact gtggagagca
     4741 gccagaatga agtctctgga gcaggatgcc ctccgtgcac agatggtcct cagcaagtcc
     4801 caggaaggcc gtggcaagag aggacccttg gagcggctgg ctgaggcccc ttcacctgca
     4861 cccacaccat cacctacacc attagaagac tttggcctcc agaccagtac ctcccctgga
     4921 cgcttgcctt tgtctggaaa gaagtttgac tacagggcct tcgcagccct gccttcttcc
     4981 aggcctgtgt atgacatcca gtcaccagat ttcgtggagg agctgaggac tttggaccca
     5041 tctcccagtc ctggcccaca ggaagaagat ggagaggtgg ctctggtgct ccttggcagg
     5101 ccctcacctg gcactgtggg ccctgaagac atgacgctat gcagtagtcg tcgggccatg
     5161 cggccaggac gccggggcct gggccctgtg ccctcctagg gccaggtgct tccccagact
     5221 tagggtgggg agcctgccag cttcatcacc tcccctaccc caggtctttt agccttggtg
     5281 ttagcatttt aaagagaccc ctcaggagtt atggcttctg attaactgcc cccatagccg
     5341 ggatctcgtg gcgagactgt aactagtgat gtttgtacaa ccaaagactc tattttgtgg
     5401 tttaagaaga ataaagttaa ctacgtttta
//
