LOCUS       NM_001195414             566 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus secretory calcium-binding phosphoprotein
            proline-glutamine rich 1 (Scpppq1), mRNA.
ACCESSION   NM_001195414 XM_002724942 XM_002728079
VERSION     NM_001195414.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Moffatt,P., Wazen,R.M., Dos Santos Neves,J. and Nanci,A.
  TITLE     Characterisation of secretory calcium-binding
            phosphoprotein-proline-glutamine-rich 1: a novel basal lamina
            component expressed at cell-tooth interfaces
  JOURNAL   Cell Tissue Res 358 (3), 843-855 (2014)
   PUBMED   25193156
  REMARK    GeneRIF: the gene, protein and pattern of expression of a related
            protein called secretory calcium-binding
            phosphoprotein-proline-glutamine-rich 1 (SCPPPQ1), is reported.
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Moffatt,P., Smith,C.E., Sooknanan,R., St-Arnaud,R. and Nanci,A.
  TITLE     Identification of secreted and membrane proteins in the rat incisor
            enamel organ using a signal-trap screening approach
  JOURNAL   Eur J Oral Sci 114 Suppl 1, 139-46 (2006)
   PUBMED   16674676
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On or before Sep 10, 2010 this sequence version replaced
            XM_002728079.1, XM_002724942.1.
            
            Sequence Note: This RefSeq record was created from genomic sequence
            data to make the sequence consistent with the reference genome
            assembly. The genomic coordinates used for the transcript record
            were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: HM015624.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN06680412,
                                           SAMN06680414 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-45                JAXUCZ010000014.1  5969992-5970036
            46-162              JAXUCZ010000014.1  5970951-5971067
            163-195             JAXUCZ010000014.1  5972655-5972687
            196-264             JAXUCZ010000014.1  5972775-5972843
            265-303             JAXUCZ010000014.1  5973815-5973853
            304-330             JAXUCZ010000014.1  5974349-5974375
            331-360             JAXUCZ010000014.1  5976624-5976653
            361-372             JAXUCZ010000014.1  5976735-5976746
            373-408             JAXUCZ010000014.1  5977472-5977507
            409-566             JAXUCZ010000014.1  5978605-5978762
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14p22"
     gene            1..566
                     /gene="Scpppq1"
                     /gene_synonym="EO463"
                     /note="secretory calcium-binding phosphoprotein
                     proline-glutamine rich 1"
                     /db_xref="GeneID:100359907"
                     /db_xref="RGD:2323137"
     exon            1..45
                     /gene="Scpppq1"
                     /gene_synonym="EO463"
                     /inference="alignment:Splign:2.1.0"
     exon            46..162
                     /gene="Scpppq1"
                     /gene_synonym="EO463"
                     /inference="alignment:Splign:2.1.0"
     CDS             106..378
                     /gene="Scpppq1"
                     /gene_synonym="EO463"
                     /note="secretory calcium-binding phosphoprotein
                     proline-glutamine rich 1-like; secretory calcium-binding
                     phosphoprotein proline-glutamine-rich protein 1"
                     /codon_start=1
                     /product="secretory calcium-binding phosphoprotein
                     proline-glutamine-rich protein 1 precursor"
                     /protein_id="NP_001182343.1"
                     /db_xref="GeneID:100359907"
                     /db_xref="RGD:2323137"
                     /translation="MKLLLLASLLSAAAALPIPLGQSGGSSSEQRFNLYPPQILPFFP
                     QFPLPQAPLIPIPFPFPFDPNQVLTPNQLLALITSILNQLQGFLGR"
     exon            163..195
                     /gene="Scpppq1"
                     /gene_synonym="EO463"
                     /inference="alignment:Splign:2.1.0"
     exon            196..264
                     /gene="Scpppq1"
                     /gene_synonym="EO463"
                     /inference="alignment:Splign:2.1.0"
     exon            265..303
                     /gene="Scpppq1"
                     /gene_synonym="EO463"
                     /inference="alignment:Splign:2.1.0"
     exon            304..330
                     /gene="Scpppq1"
                     /gene_synonym="EO463"
                     /inference="alignment:Splign:2.1.0"
     exon            331..360
                     /gene="Scpppq1"
                     /gene_synonym="EO463"
                     /inference="alignment:Splign:2.1.0"
     exon            361..372
                     /gene="Scpppq1"
                     /gene_synonym="EO463"
                     /inference="alignment:Splign:2.1.0"
     exon            373..408
                     /gene="Scpppq1"
                     /gene_synonym="EO463"
                     /inference="alignment:Splign:2.1.0"
     exon            409..566
                     /gene="Scpppq1"
                     /gene_synonym="EO463"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acactgcttc cgaatctgtg gctccaagga ccatttgaag caaaggacaa ggaaggaaac
       61 tagactccat cacctagttc tttacctcca agctctccct tcagaatgaa gcttttgctc
      121 ctggcctccc tgctgagtgc tgcagccgct ctgccaatcc ctcttggaca atctggaggg
      181 agttccagtg aacagagatt taacttgtac ccaccacaaa tcctgccgtt ctttcctcag
      241 tttccccttc cgcaggctcc tctgatcccg attccttttc ccttcccttt tgatcctaat
      301 caggttctga cacctaacca acttctggcg ttaatcactt ctattttgaa ccaactgcag
      361 ggcttccttg ggagataatc ttcccggcta catctgaaga cgcgcacgat ggggcagctg
      421 tccaggttcc ctgccctgtt atctgcagct tggaatggtc ttaacgtctt gtagactcta
      481 tagaacgttc tgtgaaacac caaataccac aggcaaatct actatctaca gccatacgct
      541 ctaaataaaa ttctcactaa aacgcc
//
