LOCUS       NM_001393861            1730 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus short coiled-coil protein (Scoc), transcript
            variant 2, mRNA.
ACCESSION   NM_001393861 XM_006255293
VERSION     NM_001393861.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1730)
  AUTHORS   McKnight,N.C., Jefferies,H.B., Alemu,E.A., Saunders,R.E.,
            Howell,M., Johansen,T. and Tooze,S.A.
  TITLE     Genome-wide siRNA screen reveals amino acid starvation-induced
            autophagy requires SCOC and WAC
  JOURNAL   EMBO J 31 (8), 1931-1946 (2012)
   PUBMED   22354037
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Mar 19, 2021 this sequence version replaced XM_006255293.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.2217379.1, CF977323.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-97                JAXUCZ010000019.1  41587647-41587743
            98-169              JAXUCZ010000019.1  41590564-41590635
            170-253             JAXUCZ010000019.1  41590957-41591040
            254-1730            JAXUCZ010000019.1  41592456-41593932
FEATURES             Location/Qualifiers
     source          1..1730
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q11"
     gene            1..1730
                     /gene="Scoc"
                     /note="short coiled-coil protein"
                     /db_xref="GeneID:364981"
                     /db_xref="RGD:1311860"
     exon            1..97
                     /gene="Scoc"
                     /inference="alignment:Splign:2.1.0"
     exon            98..169
                     /gene="Scoc"
                     /inference="alignment:Splign:2.1.0"
     CDS             148..396
                     /gene="Scoc"
                     /note="isoform 2 is encoded by transcript variant 2; short
                     coiled-coil protein A"
                     /codon_start=1
                     /product="short coiled-coil protein isoform 2"
                     /protein_id="NP_001380790.1"
                     /db_xref="GeneID:364981"
                     /db_xref="RGD:1311860"
                     /translation="MMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAV
                     KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK"
     exon            170..253
                     /gene="Scoc"
                     /inference="alignment:Splign:2.1.0"
     exon            254..1730
                     /gene="Scoc"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggcgggaag ggcggggctg atgctgtcag ttggtcggag agccgcggcc tgaggcgtcc
       61 tacctatccc gccttttccc ggcgcctcaa acgcaagacc attcattaaa gagtttgcat
      121 tcgggagctg aacgtctgtt ccccaagatg atgaatgctg acatggacgc agttgatgct
      181 gaaaatcaag tggaactgga agaaaagact cgactcatta atcaggtgtt ggagctccag
      241 cacacacttg aagatctttc tgcaagagta gatgcagtta aggaagaaaa tctgaagcta
      301 aaatcggaaa atcaagttct tggacaatat atagaaaacc tcatgtctgc ttctagtgtt
      361 tttcaaacaa ctgatacaaa aagcaaaagg aagtaaaggg ttcccctccc tctcttctgt
      421 ggattgctgc ttttttcctt ccccttaagg cttggatatg acccaaaagt tagagtacct
      481 ttgtttgctt ccctgagtat ttataaagag aatgtcagat ctcggtaata ctgatgccta
      541 acagaagagg tagcgtcctg tgtatacggt agtctatgag tgtgcacttg tagagacttt
      601 atattacaat tacagatatt tatgaaactt gaagatgaat gttttgccaa tttgcttata
      661 tatataggtt tagcactgtc ttatcatatg cttaattagt aaaatataca agaaaataac
      721 catgttgtga aaaagtgacc aaaaccatgt actgaatgca cagcttctgt accttgtgca
      781 ccatcttgtg cctctcctcc tccgtctgcc tcctccttcc catctccctc cctgacagta
      841 acttcgtctc ctacaagagt aacctgaact gtaatcattg acacttaacc aatgagacac
      901 tttcttatct atggcttgcc atttgtgata tttagtaata agataggatt gctggtttct
      961 atttaatcaa ttgaaaatag attgaagtta taaaaaatta agggttttct ttgaaatgta
     1021 aactgttaca ttgagaaggt aaaaactccc tactgcaaaa aatagtccat ttggtgttga
     1081 aaagatagga atgctggtgt gtgaggaaag atagaaatag gaaggaaaac tggataaaca
     1141 gaaataacta actcccaatg ttttccctcc agatgtgtgt tacctctgac ccacagctgc
     1201 acttttggga catatatgaa agtggactga gtctaatgta agtggattaa gagagaccag
     1261 ttaagagttt ggtctcaagg tttgtttgta cccaggagat gaacttttgc aaaattaatt
     1321 gagagtatat tagtataaga atcatgaata taagagagtt ttgtatatgt gataattatt
     1381 aaccttagta ttttatctca gttgttttct cagaatttct gtaaactcaa ctacttagtt
     1441 tgcagaattt tagtcattct tttaacaaag tttaaaaatt gagtttgtag cttccatttg
     1501 ataaggagct gctatcagaa atcatagtaa ggtctataac aggaaagacc cactaatgca
     1561 gcttgacttg gatcatctcc tgtattagtg tgagccttga gtgacttagc tatatggacg
     1621 tgtaatcctt acattgcaga cattttgcaa cccttttgtg accttgttat aactatttaa
     1681 aattgtgttc aagttctgct ttgctgttta ataaaaagct gtttcagagg
//
