LOCUS       XM_039111503            1718 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sodium channel epithelial 1 delta
            subunit (Scnn1d), mRNA.
ACCESSION   XM_039111503
VERSION     XM_039111503.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 18% of CDS bases
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-82                JACYVU010000162.1  81075581-81075662   c
            83-243              JACYVU010000162.1  81069017-81069177   c
            244-557             JACYVU010000162.1  81067729-81068042   c
            558-899             JACYVU010000162.1  81066987-81067328   c
            900-1392            JACYVU010000162.1  81066316-81066808   c
            1393-1394           "NN"               1-2
            1395-1718           JACYVU010000162.1  81065992-81066315   c
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1718
                     /gene="Scnn1d"
                     /note="sodium channel epithelial 1 delta subunit; The
                     sequence of the model RefSeq transcript was modified
                     relative to its source genomic sequence to represent the
                     inferred CDS: inserted 2 bases in 1 codon; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 75% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:103692528"
                     /db_xref="RGD:9368664"
     CDS             1..1452
                     /gene="Scnn1d"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:469..471,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: amiloride-sensitive sodium
                     channel subunit delta"
                     /protein_id="XP_038967431.1"
                     /db_xref="GeneID:103692528"
                     /db_xref="RGD:9368664"
                     /translation="MDRQLGTALRYYSLPPLHNRTKVPGEAGLPHGSQGLYFFIFFCA
                     NATIHSSICLVCSHQNQLQSSQGNAAPGCLWMLYWQLCKEIRCPLLVYLKTATVYLYI
                     INNLKKKKKERKEDFSGRDRQWSVVDLTLCPLCNSTGGHCFYCAYSSGMSTAQGXYCF
                     CYTDILALFPNSWEDSHQNHGDLVSSLKCKDTSLFCGWRLELRSWFTATTHSSGAQVT
                     SYCRWTHATVGIREVSRVIGLPVKARHCGGGGPQVGVNKAEAPFPQDKVHWLGSPCCF
                     CTGGAKSVDLGLLYNTLNTTRVSGQSLLMGSLNSSSGHCFYRRYQNLEPHQLPCISHC
                     PRPCRQEGTMMLGIGHQFPGRHRGMTGGAVSPKMSLYRIFAGTSRWPSAKSNVSLTGN
                     GGRGLANVPSAPHRPLRYWSGEGCSLTSLLYAGLDPNWLRARPVVLKLEQEPEVGISL
                     SPHPRGSVTKVNILXKGLNYHVVDEVMAGEIQG"
ORIGIN      
        1 atggatcgac aactggggac agccttacgc tactacagcc tgcctcctct tcacaacaga
       61 accaaagtgc ctggggaagc aggtctgccc catggctctc aaggtctgta cttcttcatt
      121 ttcttctgtg caaatgccac catccacagc tccatctgcc ttgtctgctc ccatcagaac
      181 cagcttcaga gttcccaggg gaatgctgct cctgggtgcc tctggatgct ctactggcag
      241 ctttgtaagg agatccggtg ccctcttctg gtgtatctga agacagctac agtgtactta
      301 tatataataa ataatcttaa aaaaaaaaaa aaagaaagaa aagaagactt ttctggcagg
      361 gacagacaat ggtctgtggt agacctaacc ctgtgtcctc tctgtaatag cactggtggc
      421 cactgtttct attgtgccta ctcctcaggt atgtcaactg ctcagggatg atattgcttc
      481 tgttacacgg acattttggc cctattcccc aattcctggg aagacagtca ccaaaatcat
      541 ggtgatcttg tctcatcgct aaaatgcaag gacacctctc tcttctgcgg ttggaggctg
      601 gaattgaggt catggttcac agctacaaca cactcttctg gagcacaagt gacttcatat
      661 tgccgttgga ctcatgctac cgttggaatt cgagaggtaa gcagggttat cggacttcct
      721 gtcaaagcca ggcactgcgg tgggggaggg cctcaggttg gagtgaacaa agctgaagca
      781 cctttccccc aagacaaggt gcattggctt ggaagtccct gttgcttctg caccggcggt
      841 gccaagagcg tggatttggg actgctgtat aacaccttaa acactacgcg ggtgagtggt
      901 cagtcactcc taatgggctc tctcaacagt tcctcaggtc attgcttcta ccgacgctac
      961 cagaacctgg aaccccacca gcttccttgc atttcccact gccccaggcc ttgcaggcaa
     1021 gaggggacaa tgatgttggg aattgggcat cagttccctg gaaggcaccg cgggatgact
     1081 ggtggtgctg tctctcccaa aatgtctttg tatagaatct ttgcagggac ttccaggtgg
     1141 ccttcagcca aatcaaatgt gagtcttaca gggaatggtg ggagaggact agccaatgtc
     1201 ccttctgctc ctcacagacc attgaggtat tggagtgggg aagggtgtag ccttacaagc
     1261 cttctctatg caggactgga tcccaactgg cttagagcaa gacctgtggt gctcaagttg
     1321 gagcaagaac cagaggtggg tatatctctg tccccccatc caagaggcag tgtgaccaaa
     1381 gtgaacattc tcnntaaggg gcttaactac catgttgtgg atgaggtgat ggctggagag
     1441 atccagggct agggttggga atacggccta tggttgacca ccttttctga ggtgatttga
     1501 gtagaggcag gctctacaca gtcctgctca taggtggggt ctgggaggcc ctgatggatt
     1561 tacccacagg ttccacaggg gcaccgtgcc atgggaagcc tctggaaact ggttccgctt
     1621 atctgtcctc tgtgctggag ctggttgtta ccgtccttgc tctttatttc cactggttct
     1681 gctgtgagga aggtgtcctg gcttggggtc ggtactgc
//
