LOCUS       NM_001107696            1038 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus sodium channel modifier 1 (Scnm1), mRNA.
ACCESSION   NM_001107696 XM_001055032 XM_227429
VERSION     NM_001107696.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1038)
  AUTHORS   Armour SM, Bennett EJ, Braun CR, Zhang XY, McMahon SB, Gygi SP,
            Harper JW and Sinclair DA.
  TITLE     A high-confidence interaction map identifies SIRT1 as a mediator of
            acetylation of USP22 and the SAGA coactivator complex
  JOURNAL   Mol Cell Biol 33 (8), 1487-1502 (2013)
   PUBMED   23382074
REFERENCE   2  (bases 1 to 1038)
  AUTHORS   Howell VM, Jones JM, Bergren SK, Li L, Billi AC, Avenarius MR and
            Meisler MH.
  TITLE     Evidence for a direct role of the disease modifier SCNM1 in
            splicing
  JOURNAL   Hum Mol Genet 16 (20), 2506-2516 (2007)
   PUBMED   17656373
REFERENCE   3  (bases 1 to 1038)
  AUTHORS   Buchner DA, Trudeau M and Meisler MH.
  TITLE     SCNM1, a putative RNA splicing factor that modifies disease
            severity in mice
  JOURNAL   Science 301 (5635), 967-969 (2003)
   PUBMED   12920299
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474015.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001055032.1, XM_227429.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FM056348.1, SRR8487226.100297.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..1038
                     /gene="Scnm1"
                     /note="sodium channel modifier 1"
                     /db_xref="GeneID:310662"
                     /db_xref="RGD:1308968"
     exon            1..162
                     /gene="Scnm1"
                     /inference="alignment:Splign:2.1.0"
     CDS             112..801
                     /gene="Scnm1"
                     /codon_start=1
                     /product="sodium channel modifier 1"
                     /protein_id="NP_001101166.1"
                     /db_xref="GeneID:310662"
                     /db_xref="RGD:1308968"
                     /translation="MSFKREGDDWSQLNVLKKRRVGDLLASYIPEDEALMLRDGRFAC
                     AICPHRPVLDTLAMLTAHRAGKKHLSSLKLFYGKKQSGKGTEQNPRPQNELKTESKTE
                     APLLTQTRIITQNALHRAPHYNSCCRRKHRPEAPAPSVSSSSVPTPEAELQSAKISKE
                     PEPRQRSDAKKSPALSTSAPMSPTKRRVLNHYLTLRSSGWVPDGRGRWVKDENVEFDS
                     DEEEPPDLPLD"
     exon            163..233
                     /gene="Scnm1"
                     /inference="alignment:Splign:2.1.0"
     exon            234..322
                     /gene="Scnm1"
                     /inference="alignment:Splign:2.1.0"
     exon            323..417
                     /gene="Scnm1"
                     /inference="alignment:Splign:2.1.0"
     exon            418..506
                     /gene="Scnm1"
                     /inference="alignment:Splign:2.1.0"
     exon            507..701
                     /gene="Scnm1"
                     /inference="alignment:Splign:2.1.0"
     exon            702..1038
                     /gene="Scnm1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tacagactca gaaagaaacc ggaagcagag aaggcgatag tgtactcttc ctacggtggc
       61 ctaaaggagc agcgaagtag gcgtagaatt tatcatattc tcatagtcgc gatgtctttt
      121 aagagggaag gggacgactg gagtcagctc aatgtgctca aaaaacgaag agttggagac
      181 ttgctagcta gttacatccc cgaggatgag gcgctgatgc tgcgggatgg acgctttgct
      241 tgtgccatct gcccccatcg accagtactg gacaccctgg ccatgctgac agctcaccgt
      301 gcaggcaaga agcatctatc cagtctgaag cttttctatg gaaaaaagca gtcaggcaag
      361 ggaacagagc aaaatccacg accgcagaac gaactgaaga cagaaagcaa aactgaggct
      421 cctttgctaa cccagactcg aataatcacc cagaatgctc tacacagagc tccccactat
      481 aacagctgct gccggaggaa gcacagacca gaagcccctg ctccctctgt ctccagttcc
      541 tctgtgccaa ctccagaggc cgaactccag agtgcaaaga tcagtaagga gcctgagcct
      601 aggcagagat cagacgccaa aaagtcacca gctctttcca cctctgcacc catgagtccc
      661 acaaaacgtc gagtcttgaa ccactacctt accctccgaa gctctggatg ggtcccagat
      721 ggacgaggcc gatgggtaaa agatgaaaac gttgagtttg actctgatga ggaagagccc
      781 cctgacctcc ccttggactg ataaccccta tttgttctac aaataaactg ctgtgggtcc
      841 tgggagtgtg ctgaccgccg aggccacttc ctccttccgt cttaggattt caagtctgct
      901 cctcaggctg gccactcctt ccctacaagg tacatgactc cccatacttc tggcccctcc
      961 cccaccttct ctcagactct tgccaagtgt cagctgcatc cagcccggtg ccctattaat
     1021 aagtctgtca gaaagagg
//
