LOCUS       XM_039100194            4857 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Scm polycomb group protein like 2
            (Scml2), transcript variant X1, mRNA.
ACCESSION   XM_039100194
VERSION     XM_039100194.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100194.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4857
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4857
                     /gene="Scml2"
                     /note="Scm polycomb group protein like 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:367793"
                     /db_xref="RGD:1564289"
     CDS             160..3351
                     /gene="Scml2"
                     /codon_start=1
                     /product="sex comb on midleg-like protein 2 isoform X1"
                     /protein_id="XP_038956122.1"
                     /db_xref="GeneID:367793"
                     /db_xref="RGD:1564289"
                     /translation="MAEPANGNLPAGLGQLVAEQAAPSTGGRENTAEVNTMGQTANED
                     YFDWDKYLKETGSVSAPSEYFRQAKTPPTNEFQIGMKLEARDPRNIDSVCVASVIGIT
                     GARLRLRLDGGDNKNDFWRLVDSSDIQPVGTCEQEGDLLQPPLGYRMNASSWPMFLLR
                     VLTGSELAPAVFFKKEPPRPPQNNFIVGMKIEAIDRKNPFMICPATIGAVSGDQVHIT
                     FDGWSGAFDYWCSYDSRDIFPVGWCRLTGDILQPPGKIRERRPRGRGMTRPGKFGTTS
                     LENKVPGPEAAEKTMSSVFTDTLEDEDRTLKDFQAAPGWKKPKGRGFIKPGIDEARPG
                     KHDQGAPAGKKSKGRGFTKTWEGETRPGRVVQVVPVEKKPKGKRVTTATDDEAAAPAE
                     KKRRGKTVTTPWSDQPRLFADQQAAPAEKKRKGKTVTTPWGDQPRLFTDPGAAPAEKK
                     RKGKTITTPWTGQPRHFADQGTAPAEKKRKGKTITTPWSDQPRLFADQGAAPAEKKRK
                     GTTVTTPWSDQPRLFADQGAAPAEKKRKGKTVTTPWGNQPRLFADQGAAPAEINRKGR
                     TVTTSWIQPPKLFLDRGAASAEKIYKGTSFTNPWCVQPRLFADQETASAEKNPKGRRV
                     TKPWSDQAIPFYFGAAGPAEAKPKGRRVTKPRKDQDQFLADEEAMPALFSALSVSSTE
                     KTPPSSSEQPKSSTSGKPKSSAFGKPKSSTSKGTQPSRKSPRKTSVPKTSKKAGKTKS
                     AGDTSASKKGITIKIVLPKKRAGRNGKKEKIIPVVSSTSSASLSSLMRSSSSNKTPEE
                     PSKIVMSTVCVYINKHGDCGPYLDPQKVRQLPNHFGPGPVNVILRRTVQACVDCAIQP
                     KDVFLFLKPDNRGGEMITAFFDGKVHTVQLPPVNSASFALRFLENFCRNLHCDKFLSS
                     QPFRLKTHVHTSATNIDQSKPENEEPKGKRSFKRLSSQPQPSAPVSSKVPRKSGRASK
                     ASSYIAVPDPSVLKQGFCKDPSTWSVDEVIQFMKHTDPHISGPLADLFRQHEIDGKAL
                     LLLKSELIMKYMGLKLGPALKLCYYIEKLKEVK"
ORIGIN      
        1 tgtctgattg gtagcttggg ccgttgggcc agaggctgtt gcgccgaggc gctgaggctt
       61 tagcagggct ttctcgcctg actggacttt ctccgagtcg aggaccctct tcttggattc
      121 caagtgctgg tttcggccca gtggacccct ctgctcacca tggcagaacc tgccaatgga
      181 aatctacctg ctggtcttgg gcaactggtt gctgagcagg cagcccccag cacaggagga
      241 agggaaaata cagcagaagt gaataccatg gggcaaacag caaatgaaga ttattttgac
      301 tgggacaagt atttgaaaga gactggatct gtaagtgctc cttcagaata tttcagacag
      361 gctaagactc caccaactaa tgaattccaa attggtatga agttggaagc ccgtgaccct
      421 cgcaatattg attcagtgtg tgttgcttca gtcattggaa ttactggggc ccgattacgt
      481 ctacgactgg atggtggtga caataagaat gatttttgga gacttgtgga ttcatcagat
      541 atacagcctg ttgggacatg tgaacaagaa ggagatttac ttcagcctcc actgggttat
      601 agaatgaatg cttcatcatg gcccatgttt ttactacgtg tactaactgg atctgaactg
      661 gcacctgcag tgttctttaa gaaggaacca ccacgtccac cccagaataa ttttatagtt
      721 gggatgaaga ttgaagctat cgacagaaaa aatccattta tgatctgccc tgccacaatt
      781 ggagctgtca gtggagatca agttcatatt acttttgatg gatggagtgg agcgtttgat
      841 tattggtgca gctatgactc ccgagatatc tttccagttg gatggtgtcg cctcacagga
      901 gatatattac agccaccagg aaaaattcgt gaaagaagac caaggggcag aggaatgacc
      961 agaccaggga aatttggaac cacttctttg gaaaataaag taccaggccc agaagctgca
     1021 gaaaaaacta tgagcagtgt attcaccgac acacttgagg atgaagacag aactttgaaa
     1081 gatttccaag cagctccagg ttggaaaaaa cccaagggca gaggattcat caaacctggg
     1141 atagatgaag ccagacctgg aaaacatgac caaggagccc cagctgggaa aaaatctaaa
     1201 ggcagaggat tcaccaaaac ttgggaaggt gaaaccagac cagggagagt tgtccaagta
     1261 gtcccagttg agaaaaaacc caagggcaaa agagtaacca cagctactga tgatgaagca
     1321 gcagccccag ctgagaaaaa acgcaggggc aaaacagtca ccaccccttg gagtgaccaa
     1381 cccagacttt ttgcagatca acaagcagcc ccagctgaga aaaaacgcaa gggtaaaaca
     1441 gttaccacac cctggggtga ccaacccaga ctttttacag atccaggagc agccccagct
     1501 gagaaaaaac gcaagggcaa aacaattacc accccttgga ctggccaacc cagacatttt
     1561 gcagatcaag gaacagctcc agctgagaaa aaacgcaagg gcaaaacaat caccacaccc
     1621 tggagtgacc aacccagact tttcgcagat caaggagcag ccccagctga gaaaaaacgc
     1681 aagggcacaa cagttaccac cccttggagt gaccaaccca gactttttgc agatcaagga
     1741 gcagccccag ctgagaaaaa acgcaagggt aaaacagtta ccacaccctg gggtaaccaa
     1801 cccagacttt ttgcagatca aggagcagcc ccagctgaga taaatcgcaa gggcagaaca
     1861 gtcaccacat cttggatcca accacccaaa ctgtttctag atcgaggagc tgcctcagct
     1921 gagaaaatct ataagggcac atcattcacc aacccctggt gtgtccaacc cagacttttt
     1981 gcagatcaag aaacagcctc agctgagaaa aaccccaagg gcagaagagt caccaagcct
     2041 tggagtgatc aagccatacc attttacttt ggagcagcag gtccagctga ggcaaaaccc
     2101 aagggcagaa gagtcaccaa acctaggaaa gaccaagacc aatttttagc agatgaagaa
     2161 gccatgccag ctctgttctc agctcttagt gtgagtagta cagagaaaac acctccttct
     2221 tcctctgaac aaccaaagtc ttctacctcc gggaaaccaa agtcttctgc ctttggaaaa
     2281 ccaaagtctt ccacctccaa agggactcaa ccttcaagga aatctccacg aaaaacaagt
     2341 gtaccaaaga ccagcaagaa agcaggaaaa actaagtcag ctggagatac ttcagcctct
     2401 aagaagggca ttactattaa aattgttcta ccaaagaaaa gagctggaag gaatggaaaa
     2461 aaggaaaaaa ttattccagt tgtttcttct acatcttcag cttctttaag ttcactgatg
     2521 agaagttctt catctaataa gactcctgag gagccatcta aaatagtgat gtctacagtc
     2581 tgtgtgtata taaataaaca tggagattgt ggtccgtacc tggatccaca gaaggttcgg
     2641 cagctaccta accacttcgg cccaggccct gtgaatgtga ttctccggcg gactgtgcag
     2701 gcctgtgtgg attgtgccat tcagcccaag gatgtctttc tatttcttaa gccagataat
     2761 agaggaggag aaatgataac tgccttcttt gatgggaaag ttcatactgt tcagctccct
     2821 ccagtgaata gtgcatcatt tgcacttcgc tttcttgaaa atttctgccg caacctgcac
     2881 tgtgataagt ttttgagtag ccagcctttc agacttaaga ctcatgttca tacctctgct
     2941 acaaacatag atcagagcaa accagaaaat gaggaaccaa agggaaagag aagcttcaaa
     3001 cgattgtctt cacaacctca accttctgct cctgtctcat ctaaggttcc cagaaagtct
     3061 gggcgagcct ctaaagcttc aagttatata gctgtacctg accccagtgt cctgaaacaa
     3121 ggcttctgta aggacccttc aacctggtct gtggatgaag tgatacagtt tatgaaacat
     3181 acagatcctc acatatcagg ccccctcgcc gacctcttca ggcaacatga aattgatggg
     3241 aaagctctgc tactactgaa gagtgagctg ataatgaagt atatggggct gaagctagga
     3301 ccagcattaa aactatgtta ctacattgaa aaacttaaag aagtgaaata gaattgaaaa
     3361 tgtgcacatt tagtttagag ataatcctca ggtatacaga aaacatttta ctttaaaagt
     3421 agttttcatc tcatcagttt ttattttata gaaagttttt atagaaatat tttattaaag
     3481 ttgtagtaca gttacattaa tcgtatactc ctaattcttt aaataccatt taatgtttgt
     3541 attagtatac ctaaaactga ctgtccgtta tttatgtctt taattatttt tattgtgttt
     3601 acaagtgtac ttcatgtggc aaagagaaga aaagctttta tttggattaa tctttatatc
     3661 taggaccaaa cagctaaacc tcaaggggga aaataccagc aacttaacct cttaacatga
     3721 gattttttct caaagcagaa tttcaagatg cacttctcgc ctgctcagtt attttagtct
     3781 ggttttacag tattttgttc ctgataaact actagaaagg aaagagccat ataaataatt
     3841 ttcctttctg ccagtgccct ttttttttgc tcatactaca ggggaaaaag caattttata
     3901 agcttacata aagtgttcct actagccttt gatattttta aactgtaaga atagagtaaa
     3961 ataaataatt ttgtgcagga gatgtttacc agagtaaatt ggatagaatt gaacaaaatt
     4021 tatacctcct tttacaactc tctgtatttt tgctaaactt gaacgttaga cacccaattc
     4081 taacatcttt gttttctaag atatttatgt ccagatttta aatttttgtt ttgtgtttat
     4141 tactcataca gatactttag catatttata tactattgta tatatgtgag aatacacaag
     4201 tgactttttg aattgaatat ggcactttac actgccacag tggtaataaa gatatataga
     4261 gatgtttatt ccctgaaaaa atatatacat catttttcta tcaccagtac ctctcggctt
     4321 attattcagg tgatgagaaa ctgtccataa gttggctccc acatagggaa gctctttatc
     4381 ctatgcaaca tttctaatta attgtctcag ttctgagcca tcaattctgc tacacttcga
     4441 aagatacatt aattctgaca tttagggttt tgtttttcca aataagagct ttcataaatg
     4501 gtgctgcatg ttactacttt gtatgatggt ttaatgcata taagctatga gaatccgtta
     4561 tacatgtatt agagtcagtt ttacatgtat tagctattct aaatgtcaac aaaatgttcg
     4621 agacaagaat gtaattttct ctttagaaaa ccaaatgtgc tttaaacaac aatacagatg
     4681 tttaaaagac tatttcacct atgtcatttc tgatacaact aaaatactta aatgtaatct
     4741 tcatgcaaat tgttgatatg aagatgatat ttccatttgg ttggacctca ggtgtttata
     4801 atattgtttt ataatcttaa gattttaaga atataataaa gttgttaaat aaccata
//
