LOCUS       XM_006256902            4570 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Scm polycomb group protein like 1
            (Scml1), mRNA.
ACCESSION   XM_006256902
VERSION     XM_006256902.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 11, 2024 this sequence was replaced by
            NM_001427177.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006256902.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4570
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4570
                     /gene="Scml1"
                     /note="Scm polycomb group protein like 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:102550809"
                     /db_xref="RGD:7723901"
     CDS             1419..2996
                     /gene="Scml1"
                     /codon_start=1
                     /product="sex comb on midleg-like protein 1"
                     /protein_id="XP_006256964.1"
                     /db_xref="GeneID:102550809"
                     /db_xref="RGD:7723901"
                     /translation="MMPGPSKVDGNIVHPREIHEIQEIEGPRAIASILNYCQLIFKTV
                     QRLENKFDDLDEKVTKIYRARSRSFWNYPPLRSAVRKYNYLRSKRVKVQKVEQIVHDD
                     SFTYPQSYSPTSPVCRRQDNNQDMENIEPMDYTLPFQYTDAINNSQSFQYTDDINNSQ
                     TFQYTDTVNLSPTVQYTDSVDLSQTIQYTDTVDLSQTIQYTDNADLSQTVQYTDTVDL
                     SQTIQYTDSVDLNQTIRYTDSVDLNQTIRYTDSVDLNQTIRYTDSVDLSQTIQYTDNV
                     DLSQTVQYTDTDDLSQTVQYADTVNNAQSFQYTSTVNNTENIQNPEDDDVFDSEDSQE
                     VVFAASTPERDYQETPPSPVYTTQTYAEYYRFKDVPGSSTMPYFSDFEIPNMDTIISA
                     TSRAKEESTLPPGELIPIQNPEMRQMALLEAQRTPVIDPNTFGSSPECNRVVVRHLGN
                     PVNWSVSDVITFLNRLDPPLADQLYPTIRKHDIDGKALLLIDSDTMIKYMGVKVGVAI
                     KFGDYIKKLKEGVNFGQ"
ORIGIN      
        1 gtttcatttt taagaggaaa tggtgtattt tcaaggccca agctacttgg tggctctttt
       61 ctacatcagg ttaagatttg tggttttatt ttgaagcagt tgactacttt tagagtttat
      121 tatacttgca tatccttgac aagaaaataa tttatatacg taagataaat tgccactagg
      181 taatgttaca ttgactttat tacatggcaa agcttctgtc tcaagctcta agggttttgc
      241 atacacttac ctgtgtactt cccaaggtat gcccatttta acctgaagaa aactgaacat
      301 gattatgact taccttgtgc attattttag aatacatacg tgttggtcat gatccaaccc
      361 agcaaccagg acactgaaat gttagttttg tactcttatt ggagactgga aatagcttta
      421 ctagtgttcc taggctacta agaaaagatg tttctaagac gccgcacctc tccccattca
      481 agttttccta ccaaggtgta ctcctgaagg cctgtcatca cggacatctc tagtgaatta
      541 caggaggagg aagagagtat gcgattatat ttaaatagta acaagttttt tttttctttt
      601 gtttttttcc ggagctgagg accgaaccca gggccttgag cttgctaggt tacactgagc
      661 taaatcccca acccctagta acaagtttta aataaacaaa tgaaagtaca tgccatctgc
      721 ctaggaaact ggcccattaa acagagccag tctagcctct agtctccatg aaaccctctg
      781 tgtacttgag aggctcttgc cacagtgctc tagaggctac ctgtccttgc aatcacctca
      841 gctaacataa atctaagatc ggaggctgag cttctaacct ttgatgccgg tgaccctgcg
      901 catagtagac aggaaggccc tttctactgg aaatcttcct tttctatgcc ctatctccat
      961 ctgtagtatg aaaaaaaaag ctcatactat atagtctttt gatctcccaa tgggattggc
     1021 tagccaatgg tcagtttatg tttataggtg gccatgatta agttaaaaga atctcccgct
     1081 cagtctcgta agccacaaac gcgcattgtt ttacggccag gcacttcgca cgcctgagtt
     1141 ttacgacact cattacatca gaagcacctg gtttccagca aaacgacggt taaaaggtgt
     1201 caacaatact ctctggtctt taacggacac cgagcgtcca catggacgcc tagcagctag
     1261 ccgttagatt tctggaaact tccagaagct ggcgtagtcg aattttcatc taaatacgag
     1321 tagaaggttt gcctctggtg actaagtagt aaaccttcca tcaagtctaa cagtaatagg
     1381 ctcaactcag gaagtggagt ttttcctgtt gtacaacaat gatgcctggc cccagtaaag
     1441 tggatgggaa tatagtccat ccacgtgaaa ttcatgaaat tcaagaaatt gaaggaccac
     1501 gagcaattgc ctctatcctg aactattgtc agcttatatt taaaactgtt caaagactgg
     1561 aaaataagtt tgatgacttg gatgaaaaag taacaaaaat ttatcgtgct cgctctagat
     1621 ccttctggaa ttatcctcct ctgagatctg cagtcagaaa atacaattac ctgaggtcta
     1681 aaagagttaa agtgcagaaa gtggaacaaa tagttcatga tgattccttc acctatcctc
     1741 aaagttatag tccaacttca ccagtctgca ggaggcaaga taataaccag gatatggaaa
     1801 acatcgagcc catggattat accctgcctt tccaatacac tgatgctatc aacaacagcc
     1861 aatctttcca gtataccgat gatatcaaca acagccagac tttccagtac actgatacag
     1921 tcaacctcag cccaactgtt cagtacaccg attcagtcga cctcagccag actatccagt
     1981 acactgatac agttgatctc agccagacta tccagtacac cgataatgct gacctcagcc
     2041 aaactgtcca atacaccgat acagtcgacc tcagccagac tatccagtac accgattcag
     2101 tggacctcaa ccagactatc cggtacactg attcagtgga cctcaaccag actatccggt
     2161 acactgattc agtggacctc aaccagacta tccggtacac tgattcagtc gacctcagcc
     2221 agactatcca gtacactgat aatgttgacc tcagccaaac tgtccagtac actgatacgg
     2281 acgacctcag ccaaactgtc cagtacgctg atactgtcaa taatgcccag tctttccagt
     2341 ataccagtac tgtcaacaac accgagaata tccaaaatcc tgaggacgat gatgtttttg
     2401 attcagagga ttcccaggaa gtagtgtttg ctgcatctac accagagaga gactatcaag
     2461 aaactccacc aagtcctgta tatacaaccc aaacatatgc ggagtattac aggtttaaag
     2521 atgtacctgg ctcttctaca atgccctact ttagtgactt tgaaattccc aatatggaca
     2581 ccatcatttc tgccacttca agagcaaagg aagaaagtac actccctcca ggcgagctta
     2641 tccccataca gaatcctgaa atgaggcaaa tggccttact ggaggctcag cgtacacctg
     2701 tgattgaccc taacactttt ggttcatcac ctgagtgtaa cagggttgtt gtaagacacc
     2761 ttggtaaccc tgtaaactgg tctgtgagtg atgtgataac atttctgaac cgtttagatc
     2821 ctccattggc agaccaactc taccctacca tcagaaaaca tgatatcgat gggaaagccc
     2881 tgctgctgat cgatagtgat acaatgataa aatatatggg ggtgaaggtg ggagtagcca
     2941 taaagtttgg agactatatt aaaaagctta aagaaggagt aaactttggc cagtaaaaaa
     3001 aatgtttata aaactttaaa tgttcttaca aattcttcct taatgcacag atgattccct
     3061 atgcttatta gatttttaaa gaagattctt atgatacctt ataactagaa ttgaaaaaat
     3121 acattatatt gaaagcctgt ttcaagatac atctaacata ttaatattag catatacaga
     3181 ctggcagttt attccatctt tataatattt tcattttata atttataaac atgcttcatg
     3241 taagaaacaa aaaaggattt gagtttatct ttatgcatat ttttaaagca actaaagagg
     3301 aaatataaga aaccaataac tcccataatt aaagtggtga gaaattttta cagaagagaa
     3361 aattaaagga gaatatatag ttaccctcct tggatgtctt atttatatat tactggagta
     3421 tatttttcat gttctcccag ttttcaggaa aacactcaat aggcatataa tttattttcc
     3481 tgtgttcaga tttagaaaaa gaaagtgaag cttaaaggat ctaatgagct tcacccaaca
     3541 aaatattctt accaggtttt tagataattt atagtatata tagaataaga taccatttca
     3601 gatttaaaag gagaaaatga agcttacaaa gtgtctatga gcttcaggca actaaatatt
     3661 tttataagtg tttaggtaaa attttggata tatagaatga tcattcattt tatctaagaa
     3721 gtgtacctaa agagcagtat ggaagaattc tgactatagt gagaagatga atagttacta
     3781 cattaaagcc tttatatttt tatcaacttt ggacatttag taaagaattc attattcaaa
     3841 tgtatctttg aagatactta tactcaaatt ttaaatatat aatagaatag aatatattat
     3901 tttatgtgct tattcttcat ggagatagta cttttgtacc aaaaatatac ataagtaaat
     3961 attgtatttt gaatttgaaa tggtactttg atacaaggac aatgttaagc catttataaa
     4021 caagatgctc ttattctgct tgccacttgc ccttactagg ccttctcagt ttagccttca
     4081 gaatcagaaa tagtacagag gctggtttct acatatggaa gtggtctgtc ctgtaccatg
     4141 gtttctggta tctatgatgt tcactattga aagatacact agtctgacat gttaggaact
     4201 ttattttata attttaaact gtcaatagaa acatggatca ttgctgtttt gttattgctt
     4261 atcacattgt ataacttttg atgtaaggga aactgtgaga attggtgcta ataatattga
     4321 ttacttagtg aaaatggtaa tgaaatattc accaggagta ataatttagc ttctctcttt
     4381 agaaaaggaa ctattctagt tacagtaatt aaaaagattg cttcatttgt attcctgctt
     4441 gtgtgataag acattctaac ttcatacttt tcaaatcata taaagatgct gtgcacagtt
     4501 gaataagatt aagatgcttg aaaaatgttc tgtaattttc aggtttcaag atataataaa
     4561 gttaaataaa
//
