LOCUS       NM_001109669            2976 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus Scm polycomb group protein homolog 1 (Scmh1),
            mRNA.
ACCESSION   NM_001109669 XM_001053591 XM_342900
VERSION     NM_001109669.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2976)
  AUTHORS   Wang C, Zhao JJ, Lu CL, Han XD, An LS and Ma X.
  TITLE     Polycomb group proteins are essential for spinal cord development
  JOURNAL   Front Biosci (Landmark Ed) 15 (3), 1018-1022 (2010)
   PUBMED   20515739
  REMARK    GeneRIF: Results suggest that the Polycomb proteins may be involved
            in spinal cord development.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2976)
  AUTHORS   Takada Y, Isono K, Shinga J, Turner JM, Kitamura H, Ohara O,
            Watanabe G, Singh PB, Kamijo T, Jenuwein T, Burgoyne PS and Koseki
            H.
  TITLE     Mammalian Polycomb Scmh1 mediates exclusion of Polycomb complexes
            from the XY body in the pachytene spermatocytes
  JOURNAL   Development 134 (3), 579-590 (2007)
   PUBMED   17215307
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473968.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_342900.3, XM_001053591.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC131847.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132268
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2976
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..2976
                     /gene="Scmh1"
                     /note="Scm polycomb group protein homolog 1"
                     /db_xref="GeneID:362581"
                     /db_xref="RGD:1305788"
     exon            1..128
                     /gene="Scmh1"
                     /inference="alignment:Splign:2.1.0"
     exon            129..191
                     /gene="Scmh1"
                     /inference="alignment:Splign:2.1.0"
     exon            192..215
                     /gene="Scmh1"
                     /inference="alignment:Splign:2.1.0"
     exon            216..358
                     /gene="Scmh1"
                     /inference="alignment:Splign:2.1.0"
     CDS             283..2277
                     /gene="Scmh1"
                     /note="sex comb on midleg 1; sex comb on midleg homolog 1"
                     /codon_start=1
                     /product="polycomb protein SCMH1"
                     /protein_id="NP_001103139.1"
                     /db_xref="GeneID:362581"
                     /db_xref="RGD:1305788"
                     /translation="MLVCYSVLACESLWDLPCSIMGSPLGHFTWDKYLKETSSVPAPV
                     HCFKQSYTPPSNEFKISMKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFW
                     RLVDSSEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIKIFHKEPP
                     SPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTFDGWRGAFDYWCRFDSRD
                     IFPVGWCSLTGDNLQPPGTKVVIPKNPSPSSDVSTEKPSINSTKTVLEPQPGQRGRKP
                     GKKRGRTPKILIPHPTSTPSKSAEPLKFPKKRGPKPGSKRRPRTLLSPPPTSPTTSTP
                     EPDTSTVPQDAATIPSSAMQAPTVCIYLNKSGSTGPHLDKKKIQQLPDHFGPARASVV
                     LQQAVQACIDCAYHQKTVFSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLRFLE
                     KLCHNLRSDNLFGNQPFTQTHVSLTATEYSHGHDRYLPGETFVLGNSLTRSLETHSDL
                     MDSALKPANLVSTSQTLRTPGYRPLLPSCGLPLSTVSAVRRLCSRGVLKGTRERRDVE
                     SFWKLNHSPGSDRHLESRDPPRLSGRDPSSWTVEDVMQFVREADPQLGSHADLFRKHE
                     IDGKALLLLRSDMMMKYMGLKLGPALKLSFHIDRLKQGKF"
     exon            359..429
                     /gene="Scmh1"
                     /inference="alignment:Splign:2.1.0"
     exon            430..664
                     /gene="Scmh1"
                     /inference="alignment:Splign:2.1.0"
     exon            665..753
                     /gene="Scmh1"
                     /inference="alignment:Splign:2.1.0"
     exon            754..997
                     /gene="Scmh1"
                     /inference="alignment:Splign:2.1.0"
     exon            998..1227
                     /gene="Scmh1"
                     /inference="alignment:Splign:2.1.0"
     exon            1228..1354
                     /gene="Scmh1"
                     /inference="alignment:Splign:2.1.0"
     exon            1355..1555
                     /gene="Scmh1"
                     /inference="alignment:Splign:2.1.0"
     exon            1556..1747
                     /gene="Scmh1"
                     /inference="alignment:Splign:2.1.0"
     exon            1748..1942
                     /gene="Scmh1"
                     /inference="alignment:Splign:2.1.0"
     exon            1943..2008
                     /gene="Scmh1"
                     /inference="alignment:Splign:2.1.0"
     exon            2009..2151
                     /gene="Scmh1"
                     /inference="alignment:Splign:2.1.0"
     exon            2152..2976
                     /gene="Scmh1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggagagat taatacacag agaacctaac ttgtcagagt cagagcaagg cagaggtgga
       61 tccaggaata agtcctaaac ttcgtcactc cttgcttagt tttagttcat tgactatgca
      121 gcctagtgac tggaatgatg tgaaaaaacc taagtatggt cacttgtcag aatctgcatc
      181 tcaataccaa gagcctgtgg acatcctgga gctagcatct agtgcttttt gtatgggcca
      241 aaggggcctt gtgctgctcc acctcagagg aaacttcaag aaatgctggt ttgctacagt
      301 gttttagctt gtgagagtct ctgggacctt ccctgctcca tcatggggtc acctctaggt
      361 cattttacct gggacaaata cctaaaagaa acaagttcag tcccagcacc tgtccattgc
      421 ttcaagcagt cctacacacc tccaagcaat gagttcaaga ttagcatgaa attggaagca
      481 caggacccca ggaacaccac gtccacctgt attgccacag tagttggact gacaggtgcc
      541 cgactccgtc tgcgccttga tggcagtgac aacaagaatg acttctggag actggttgac
      601 tcctccgaaa tccaaccaat tggaaactgt gagaagaatg gcggtatgct gcagccacct
      661 ctaggatttc ggctgaatgc ctcctcttgg cccatgttcc ttttgaagac gctaaatgga
      721 gcagagatgg ctcccatcaa gattttccat aaggagccac catcaccttc ccacaacttc
      781 ttcaaaatgg gaatgaagtt ggaagctgtg gacagaaaga accctcattt catctgccca
      841 gccactattg gagaggtccg aggctcagag gtgctggtca cctttgatgg gtggcgaggc
      901 gcatttgact actggtgccg ctttgactcc cgggacatct ttcctgtggg ctggtgttct
      961 ttgactggag ataacctgca gccgcctggc accaaagttg tgattccaaa gaatccttcc
     1021 ccttcgtctg atgtgagcac tgagaagccc agcatcaaca gcaccaaaac tgtcttggag
     1081 cctcagccag ggcagagagg gcgcaaacca ggaaagaagc ggggccgaac gcccaagatc
     1141 cttattcccc atcccacctc taccccatcc aagtcagctg aacctttgaa atttccaaag
     1201 aagagaggcc ccaagcctgg cagtaagagg agacctcgga ctttgctgag cccaccaccc
     1261 acctcaccaa caaccagcac tcctgaaccg gacaccagca ctgttcccca agatgctgcc
     1321 accatcccaa gttcagccat gcaggccccc acagtttgta tctacttgaa caagagcggc
     1381 agcacgggcc cccacttgga taaaaagaag atccaacaac tccctgacca ttttgggcca
     1441 gcccgtgcct ctgtggtgtt gcagcaggct gtccaggctt gcattgactg tgcttatcac
     1501 cagaaaactg tcttcagctt cctcaaacag ggccatggcg gtgaagtcat ctcagccgtg
     1561 ttcgaccggg aacagcacac actcaacctc ccagccgtca acagcatcac ctatgtcctc
     1621 cgtttcctgg agaagctctg ccacaacctt cggagtgaca atctgtttgg caaccagccc
     1681 tttacacaga ctcacgtgtc actcactgcc acagagtaca gccacggcca cgacaggtac
     1741 ctaccaggtg aaacctttgt cctgggcaat agcctgacga ggtccttgga gacacactca
     1801 gacctgatgg actctgcctt gaagcctgcc aacctcgtca gcacgtccca gaccctccgg
     1861 actcctggct atcggccctt gcttccctcc tgtggccttc cattgagcac tgtctctgct
     1921 gtgcgcaggc tctgctctcg gggagtgtta aaaggaacaa gggaaagaag ggatgtggaa
     1981 tcattttgga aactaaatca ttccccaggg tcagatcgac acctggagag ccgagatccc
     2041 cctcgcctaa gtggccggga cccctcctca tggacagtgg aggatgtgat gcagtttgtc
     2101 cgggaggctg atcctcagct tggatcccat gctgacctct tccgaaaaca tgaaatcgat
     2161 ggcaaggccc tgctcctgct gcgcagtgac atgatgatga agtacatggg cctgaagctg
     2221 gggcctgccc tcaagctctc ctttcacatt gaccggctga agcagggcaa gttctgaaca
     2281 ggaggcactc ttctcccagg aagccgccag ccagctccca ggcaccgtag tagggctctg
     2341 ggtgacctca ggactctagg aggctggaaa gccaccactg ctacccttcc tgccctgatg
     2401 cgtccttcca tgaaggactg aggagggaac agtgggtagg gctggtgctg ctcttcccat
     2461 tagcctgctg tggctcccgg gcccttctat ttatttctca aggctagcca gcctctcacc
     2521 acaagtttag actgagcacc tttcaagaga tgaggaagac gccaacccta ggaccttgaa
     2581 aggccctggt acccaggccc cttaccacct cctgggcttg gcatagtgtc ccatggcccc
     2641 cagctcatgc cttctcactg gatccccaga ctctgaactt atggtgcaga cctttttaaa
     2701 gaaatctttt cttattgcta atttattgct tctcgcattt ggacttaatg cttctcttgc
     2761 accaaacatt ttttttggaa gagggagacc atcctctgtg gtccagagag ggcctctcca
     2821 gagaagcgtg gccctatttc agaagacact gccctagggc ccttcttctc tggaatggac
     2881 aaagtatatg gctcactgag cataaggtga aggtccctct tcctacactg ggtcctctgt
     2941 agccccagcc ttcatctctg atggagtttt cccctc
//
