LOCUS       NM_001100666            2372 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus schwannomin interacting protein 1 (Schip1), mRNA.
ACCESSION   NM_001100666 XM_001061765 XM_001061820 XM_001069584 XM_215570
VERSION     NM_001100666.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2372)
  AUTHORS   Papandreou,M.J., Vacher,H., Fache,M.P., Klingler,E.,
            Rueda-Boroni,F., Ferracci,G., Debarnot,C., Piperoglou,C., Garcia
            Del Cano,G., Goutebroze,L. and Dargent,B.
  TITLE     CK2-regulated schwannomin-interacting protein IQCJ-SCHIP-1
            association with AnkG contributes to the maintenance of the axon
            initial segment
  JOURNAL   J Neurochem 134 (3), 527-537 (2015)
   PUBMED   25950943
  REMARK    GeneRIF: CK2-regulated IQJC-SCHIP-1 association with AnkG
            contributes to axon initial segment maintenance.
REFERENCE   2  (bases 1 to 2372)
  AUTHORS   Miyamoto-Sato,E., Fujimori,S., Ishizaka,M., Hirai,N., Masuoka,K.,
            Saito,R., Ozawa,Y., Hino,K., Washio,T., Tomita,M., Yamashita,T.,
            Oshikubo,T., Akasaka,H., Sugiyama,J., Matsumoto,Y. and Yanagawa,H.
  TITLE     A comprehensive resource of interacting protein regions for
            refining human transcription factor networks
  JOURNAL   PLoS One 5 (2), e9289 (2010)
   PUBMED   20195357
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2372)
  AUTHORS   Schmahl,J., Rizzolo,K. and Soriano,P.
  TITLE     The PDGF signaling pathway controls multiple steroid-producing
            lineages
  JOURNAL   Genes Dev 22 (23), 3255-3267 (2008)
   PUBMED   19056881
REFERENCE   4  (bases 1 to 2372)
  AUTHORS   Schmahl,J., Raymond,C.S. and Soriano,P.
  TITLE     PDGF signaling specificity is mediated through multiple immediate
            early genes
  JOURNAL   Nat Genet 39 (1), 52-60 (2007)
   PUBMED   17143286
REFERENCE   5  (bases 1 to 2372)
  AUTHORS   Goutebroze,L., Brault,E., Muchardt,C., Camonis,J. and Thomas,G.
  TITLE     Cloning and characterization of SCHIP-1, a novel protein
            interacting specifically with spliced isoforms and naturally
            occurring mutant NF2 proteins
  JOURNAL   Mol Cell Biol 20 (5), 1699-1712 (2000)
   PUBMED   10669747
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB726734.1, CK366144.1, JAXUCZ010000002.1 and BC092618.1.
            
            On or before Sep 7, 2008 this sequence version replaced
            XM_001061765.1, XM_001061820.1, XM_215570.4, XM_001069584.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            transcript and genomic sequence to make the sequence consistent
            with the reference genome assembly. The extent of this transcript
            is supported by transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.11269.1,
                                           SRR26360194.950900.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-485               CB726734.1         2-486
            486-1004            CK366144.1         177-695
            1005-1047           JAXUCZ010000002.1  155061442-155061484
            1048-2372           BC092618.1         20-1344
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q32"
     gene            1..2372
                     /gene="Schip1"
                     /note="schwannomin interacting protein 1"
                     /db_xref="GeneID:295105"
                     /db_xref="RGD:1309962"
     exon            1..78
                     /gene="Schip1"
                     /inference="alignment:Splign:2.1.0"
     CDS             70..1752
                     /gene="Schip1"
                     /codon_start=1
                     /product="schwannomin-interacting protein 1"
                     /protein_id="NP_001094136.1"
                     /db_xref="GeneID:295105"
                     /db_xref="RGD:1309962"
                     /translation="MRLEELKRLQNPLEQVDDGKYLLENHQLATDMENNIENYPLSLQ
                     PLESKVKIIQRAWREYLQRQDPLEKRSPSPPSVSSDKLSSSVSMNTFSDSSTPDYRED
                     GMDLGSDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLVSALEDYEEPFPVY
                     QKKVIDEWAPEEDGEEEEEEDDRGYRDDRCPAREPGDVSARIGGSGSGNRSAATTMPS
                     PMPNGNLHPHDPQDLRHNGNLVIAGRPNASRVPRRPIQKTQPPGNRRGGRNRASGGLC
                     LQPPDGGMRVPEEPPAPPMDWEALEKHLAGLQFREQEVRNQGQARTNSTSAQKNERES
                     IRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSGMNLQICFVNDSGSDKDSDADDS
                     KTETSLDTPLSPMSKQSSSYSDRDTTEEESESLDDMDFLTRQKKLQAEAKMALAMAKP
                     MAKMQVEVEKQNRKKSPVADLLPHMPHISECLMKRSLKPTDLRDMTIGQLQVIVNDLH
                     SQIESLNEELVQLLLIRDELHTEQDAMLVDIEDLTRHAESQQKHMAEKMPSK"
     exon            79..143
                     /gene="Schip1"
                     /inference="alignment:Splign:2.1.0"
     exon            144..224
                     /gene="Schip1"
                     /inference="alignment:Splign:2.1.0"
     exon            225..360
                     /gene="Schip1"
                     /inference="alignment:Splign:2.1.0"
     exon            361..1047
                     /gene="Schip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1048..1166
                     /gene="Schip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1167..1284
                     /gene="Schip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1285..1482
                     /gene="Schip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1483..1606
                     /gene="Schip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1607..1700
                     /gene="Schip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1701..2353
                     /gene="Schip1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgaggaaca ccgtgcggca gcctctgatt cagtctcctc ttacctgcag gtgctctaga
       61 aacttcaaaa tgcgactgga agaactaaaa agactacaga atcctttaga acaagttgat
      121 gatggaaaat atttgctcga gaatcaccag ctggccacgg atatggagaa taacattgag
      181 aactatcccc tcagcctaca gcccttggaa tccaaggtga aaatcattca gcgagcatgg
      241 cgagagtact tgcagaggca ggaccccctg gagaagagga gcccatcccc accttctgtc
      301 tcttcagaca agctgagcag ctctgtcagc atgaacacct tctccgacag cagcacaccc
      361 gattaccgag aggatgggat ggatctaggc agtgacgccg gcagcagcag cagcagcagc
      421 cgcgccagct cacagtccaa ctccaccaaa gtgacccctt gctccgagtg caaatcctca
      481 tcgtcgccgg ggggcagcct ggacttggtg tctgctctgg aagactatga agagcccttc
      541 ccggtctacc agaagaaggt gattgatgag tgggctccgg aggaggacgg ggaggaggag
      601 gaagaggagg acgatcgagg gtatcgggat gaccgctgcc cggcccggga gccgggggac
      661 gtaagcgcca ggatcggcgg cagcggcagc gggaacagga gcgccgccac caccatgcct
      721 tccccgatgc ctaacggcaa cctccacccg cacgaccccc aagacctcag gcacaatggc
      781 aacctggtga tagccggccg gccgaacgcc tcccgggttc cccggcgacc catccagaag
      841 acccagcctc caggaaaccg gcgcggaggc cggaaccggg catctggggg gctctgcctt
      901 cagcctccgg acggcgggat gcgcgtcccg gaagaacccc ctgcgccccc aatggactgg
      961 gaggcgttgg aaaagcatct ggctgggctg cagttccggg agcaggaggt gcgaaatcag
     1021 ggtcaggcga ggaccaactc cacctctgca cagaagaatg agagagagtc tatcagacag
     1081 aagttggcac tcggaagctt ctttgacgat ggccccggaa tctataccag ctgcagcaaa
     1141 agcgggaagc caagcctttc ctcgagacta caaagtggga tgaacctcca gatatgcttt
     1201 gtcaacgaca gcggcagtga caaggacagc gatgccgacg acagtaagac tgagaccagc
     1261 ctggacacgc ccttgtcccc catgagcaag cagagttctt cctactctga tagagacacc
     1321 accgaggagg aatctgaatc cctggatgac atggacttcc ttacaaggca aaagaagcta
     1381 caagctgaag ccaaaatggc cctggccatg gccaaaccaa tggccaaaat gcaagtagaa
     1441 gtggaaaaac agaacaggaa aaagtctccc gtcgctgacc ttctgcctca catgcctcac
     1501 ataagcgaat gcttgatgaa aagaagctta aagcccaccg acctgagaga catgactatc
     1561 gggcagctac aagtgatcgt caatgacctt cactcccaga ttgagagttt gaatgaagag
     1621 ttggtccagc tgctcctcat tcgagatgag ctgcacacag aacaagacgc catgctggtg
     1681 gacatagaag acttgactag acacgctgag agtcagcaga agcacatggc tgagaaaatg
     1741 ccctcgaagt gaaagagagc catccaccag aggacaagct agaatttatt ttgcttctgt
     1801 ggtcgtaaaa aatgctgttg ctaaaggtgg ctccgaaaga gacatcggtg ttagtcattg
     1861 gtaatgtcca cgcttcctgt cccgtgactg gccttcgctt cttaatttat tttaatttaa
     1921 ttcttttttt ttttttactc tctccactta ctatcaggcc ttttaataaa atatcgttac
     1981 gagaactgta cagtacttac accaccaaca accgtggata agcagagggt agttttaact
     2041 ttatttttat ttgtttagct aaactttaag ttggagcagt attttaccat tgaccatttc
     2101 attcttcact gtagctttga agaggaactg taaatgacgg tgctaacaag tcaaaataca
     2161 tgcctgcctc gtagtgaagt cgtagctctc catactacgt atattttaat cagttttcaa
     2221 cattttgtga atgttgacta cctgaggttt attcttagat gtgctattaa cattctgtcg
     2281 gatccacatg gttccttgaa agttttatgt ataaatatgt aaaataaaaa ttaaaacttt
     2341 gtttcatatg ataaaaaaaa aaaaaaaaaa aa
//
