LOCUS       NM_001017499            2360 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus sec1 family domain containing 2 (Scfd2), mRNA.
ACCESSION   NM_001017499 XM_573587
VERSION     NM_001017499.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2360)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2360)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC085889.1.
            
            On Apr 29, 2005 this sequence version replaced XM_573587.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085889.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132272, SAMD00132279
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2360
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14p11"
     gene            1..2360
                     /gene="Scfd2"
                     /note="sec1 family domain containing 2"
                     /db_xref="GeneID:498353"
                     /db_xref="RGD:1562708"
     exon            1..905
                     /gene="Scfd2"
                     /inference="alignment:Splign:2.1.0"
     CDS             68..2122
                     /gene="Scfd2"
                     /codon_start=1
                     /product="sec1 family domain-containing protein 2"
                     /protein_id="NP_001017499.1"
                     /db_xref="GeneID:498353"
                     /db_xref="RGD:1562708"
                     /translation="MSAVGVLSFAQQGWEQVLAKVKWSVVYLDAACAESLHWSCGSSR
                     LLEAVKGPACNLREFEPHAIGGGAKQPRAVFVLSSLLKGRIVDTLQDIICRSHFQHCV
                     VVTAVSHPVHLTANHVPAAAAAELEGQQPVFEQLEEKLCEWMGNMNYTAEVLHVPLLL
                     APAAPHLAFTPAFATLFPLLPQDVHVLNNARPDKRRLNSLGEVDATALTPELLLYIRC
                     LVSGLSSLCEHLGVREECFAVGSLSRVIATDLANYAPAKNRRKTATGRASVVFVDRTL
                     DLTGAVGHHGDNLVEKIISALPQLPGHTNDVMVNMAELTAVQAVEENQTVIAPGCLAP
                     SNDASAKALWEALLNTKHKEAVMEVRRHLVEAASRENLPIKMSMGRVTPGQLMSYIQL
                     FKNNLRALTNHCGLLQLGMATVQTLKHPQTAKWDNFLAFERLLLQSLGDSTMAGVLNQ
                     LLPLIKSSSQRTRDDYSPEELLILLIYIYSVTGECTRDTDLGDVEEKVRRALASVFSE
                     ESELSPLLQKITGCDSAIDLTLPKSQTAVNDVFTALREIAGARNLLRQFKSVYVPGNS
                     THQAAYKPLLKQVVEEIFNPEKPDPIDIEHMSSGLTDLLKTGFSMFMKVSRPHPSDHP
                     LLILFVVGGVTVAEAKMVKDLVASLKPGTQVMVLSTRLLKPLNIPELLFATDRLHPDL
                     GF"
     exon            906..1074
                     /gene="Scfd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1075..1202
                     /gene="Scfd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1203..1378
                     /gene="Scfd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1379..1628
                     /gene="Scfd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1629..1774
                     /gene="Scfd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1775..1909
                     /gene="Scfd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1910..2029
                     /gene="Scfd2"
                     /inference="alignment:Splign:2.1.0"
     exon            2030..2338
                     /gene="Scfd2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgcgttctga ccgaggttcc tgcgcatccg ccggtgagac tcctggccag actgcgccta
       61 ccgaatcatg agtgccgtgg gcgtactgtc ttttgcccag caaggctggg agcaggtgct
      121 ggccaaagtg aagtggtccg tggtctacct ggacgctgcc tgcgcggaga gcctgcactg
      181 gagctgcggt tcaagcaggc ttctggaggc ggtgaagggt cctgcgtgca acctgaggga
      241 atttgaaccc catgcaatag gcggtggggc caagcagccc cgggcggtgt tcgttttgag
      301 cagcctgctg aaaggccgca tagtagacac tctacaagac atcatttgcc gcagtcactt
      361 tcagcactgt gtggtggtca cagccgtgag ccacccagtc cacctcactg ctaaccatgt
      421 accagcagct gcagcggccg agctagaggg gcagcagccg gtgttcgaac agctggagga
      481 gaagctctgt gagtggatgg gcaacatgaa ctacacagct gaggtgctcc acgtcccgtt
      541 gttgctcgcc cctgctgctc cccaccttgc ctttactcca gcctttgcta cccttttccc
      601 actgctacct caggatgtgc atgttcttaa taatgccaga cccgacaaga ggagactgaa
      661 cagcttgggt gaggtggatg ccactgccct aaccccagag ctgctgctgt acattagatg
      721 cctcgtgtca ggcctcagtt ctctgtgtga acatctaggg gtacgagagg agtgtttcgc
      781 tgtgggttcc ctcagtcggg tcatcgctac agatctggca aattatgccc ctgccaagaa
      841 caggagaaag actgctacag gcagggcttc cgtggtcttt gtggatagaa ctctggatct
      901 cacgggagcg gttggacacc atggagacaa cttagtagag aagatcattt cagcacttcc
      961 acagcttccg ggccacacca acgacgtgat ggtcaacatg gcagagctca cggctgtcca
     1021 ggctgtggag gaaaaccaga ccgtgattgc accaggctgc cttgcgccat ccaatgatgc
     1081 ctcagccaag gccctctggg aagccttact gaacaccaag cacaaagagg cggtgatgga
     1141 agtccggaga catctagtgg aagcagccag cagagagaac ctgcccatca agatgagtat
     1201 ggggagagtc actccagggc agctcatgtc ctatattcag ctcttcaaga acaacctcag
     1261 agctcttaca aatcattgtg ggcttctaca gctagggatg gccacagttc aaactctgaa
     1321 gcacccacag actgccaagt gggataactt cctggcattt gaaaggcttc ttctacagag
     1381 tcttggggat tcaaccatgg ctggtgtgct aaatcagctg ctacccttga ttaagtcctc
     1441 aagccagaga accagggacg actacagccc cgaggagctg ctaatcctcc tcatatacat
     1501 ctactcggtc actggggaat gcacgcggga cacagacctg ggagacgtgg aagagaaggt
     1561 gaggagagca ctggccagtg tcttctctga ggagtctgag ctgtcccctt tgctgcagaa
     1621 gatcacaggc tgtgactctg caatcgacct gacattgccc aaatcccaaa ctgctgtgaa
     1681 tgatgtcttc acggctctcc gggagatcgc tggagctagg aatctcctga gacagttcaa
     1741 atcggtgtat gttcctggaa atagtaccca tcaggcagcc tataagccac tgttgaagca
     1801 ggttgtggaa gaaatattta atcctgagaa gccagatccc attgacattg aacatatgtc
     1861 ctcaggcctc actgatctcc ttaaaactgg attcagcatg ttcatgaagg tgagccggcc
     1921 ccatcccagt gaccatcccc tcttgatcct ctttgtggtg ggcggcgtca cagttgctga
     1981 agccaaaatg gtcaaagacc ttgtagcatc tctgaagcca ggaacccagg tgatggtgct
     2041 gtccacaaga ctcctgaagc cacttaacat tcctgagctg ctctttgcaa ctgaccggct
     2101 acacccagac cttggcttct gacatctaag agaagattag acctgtttga gctggaaata
     2161 ccaataccca ttggtcaccg ctccagatat gcctccaaag gctgtgtccc ggttactaat
     2221 tataggtatg acttaattct accagagatc tgcataactg catggaaggc agtttgtttg
     2281 gactgctccc gttcttcaaa agcaaaataa agacttgtgt tctcattctt cttctaaaaa
     2341 aaaaaaaaaa aaaaaaaaaa
//
