LOCUS       XM_574671               2369 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus stearoyl-coenzyme A desaturase 4
            (Scd4), mRNA.
ACCESSION   XM_574671
VERSION     XM_574671.8
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_574671.9.
            
            On Jan 21, 2021 this sequence version replaced XM_574671.7.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2369
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2369
                     /gene="Scd4"
                     /note="stearoyl-coenzyme A desaturase 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 52 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:499358"
                     /db_xref="RGD:1563648"
     CDS             365..1510
                     /gene="Scd4"
                     /codon_start=1
                     /product="stearoyl-CoA desaturase 4"
                     /protein_id="XP_574671.7"
                     /db_xref="GeneID:499358"
                     /db_xref="RGD:1563648"
                     /translation="MLHLSSVAADSDPALSAFTTGPKLPTSKMTALLPREISSKCGTT
                     TIVDSHSWRHQDGEETIPFQSEDIRPEMREDIHDPSYQDEEGPPPKLEYVWRNIIFMA
                     LLHVGALYGITLVPSCKVYTWLLGIFYNIVAGLGITAGAHRLWSHRTYKARLPLRLFL
                     IMANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEK
                     GGKLDMSDLKAEKLVMFQRRYYKLAVTLIFITLPTMVPWYFWGETLRHSLCVSTFLRY
                     AVLLNFTWLVNSAAHLYGHQPYDRSIGARENPLVSVASLGEGFHNYHHAFPYDYSVSE
                     YRWHINFTTFFIDCMAALGLAYDRKRVSKAAVLARVKRTGDGSHKSS"
ORIGIN      
        1 aatgctgaaa tactctatct ctctaggaat gtggacaaaa gcggctctct cttagtgtgc
       61 gcggtatccc atagccttgc cttaggtgaa tgtgggcttt gctggctgtc tcctcccctc
      121 tctcgccttc agccctcatc tcctcatggg gctgccttga ctagccggct ctgaaccctt
      181 tatcctttgt tggcagtcgt gatgcacatc tgaacaaata ccagacacag tcaccaagtg
      241 tcagctctac atacccttta aatcccaagc ctggaaagaa ccacacacgg caggactgag
      301 cggcgacgtc tgtacggtta gccaggtaca cggtgcgcac agtataaggt ggcctccaga
      361 ctcaatgctc catctatcct cagtcgctgc agattcggac cctgcactct ctgccttcac
      421 aacaggaccc aaacttccga cgagcaagat gacggccctc ttgccacgag agatttccag
      481 caagtgtggc actaccacca ttgtagactc tcactcctgg agacatcagg atggagagga
      541 gacgataccc ttccagtcag aagacatccg tcctgaaatg agagaagata tccatgatcc
      601 cagctaccag gatgaggagg ggcccccacc caagctggag tacgtctgga ggaacatcat
      661 cttcatggcc ctgctgcacg tgggagccct gtacgggatc acactagtcc cctcctgcaa
      721 ggtctacacc tggctcttgg gaatattcta taacatagtt gccggtttgg gcatcacagc
      781 tggggctcat cgcctgtgga gccatcgaac ctataaagca aggctgcccc tgaggctctt
      841 cctcatcatg gcgaacacca tggctttcca gaacgatgtg tacgaatggg cccgggatca
      901 ccgcgcccac cacaaattct cagagacaca cgccgaccct cacaactccc gccgtggctt
      961 tttcttctct cacgtgggtt ggctgcttgt gcgcaaacac ccggctgtca aagagaaggg
     1021 cggaaagctg gacatgtctg acctaaaagc tgagaagctg gtgatgttcc agaggaggta
     1081 ctacaagctg gctgtcaccc tcatcttcat caccctgccc acaatggtac cctggtactt
     1141 ctggggtgaa actctccgac acagcctgtg cgtctctact ttcctgcggt atgccgtgct
     1201 cctaaatttc acctggctgg tgaacagtgc cgcccacctc tacggacacc agccctacga
     1261 caggagcatt ggtgcccgag agaatcccct ggtgtcagtg gcatctttag gcgagggctt
     1321 ccacaactac catcacgcct tcccctatga ctactctgtc agtgagtacc gctggcacat
     1381 caacttcacc acgttcttca ttgactgcat ggctgccctg ggcctggctt atgaccggaa
     1441 gagagtgtcc aaggccgctg tcttagccag ggttaaaaga actggagatg ggagccacaa
     1501 gagtagctga gtttggggtc atctggtctc tgtaccataa ccagctgggc caacatttaa
     1561 tgttctgtta actactgaat aatgccacca aagcccactc cattccccac cccctctctg
     1621 tcatctattc agctctatag accaggctgg ccttgacctc acagaggtct tcctccctct
     1681 gcctctcagt tgttgggatt taaggggtgc atcaccatgc ccagctctgc caagtattct
     1741 tggcaaatgc tcaaggcagc tctccttttt ggcttctctg tcttctagcc tccaccccaa
     1801 cacacacttt tttctgttat gcttctcctc cttttctcct tcgttgcttc tctaagaagc
     1861 cgtctgtgag tgcttggccc acctccaaag gtttcacaga ttttctgatg tctcaaagta
     1921 aggaccctta ttgcagaccg ttctctgtta aggtttttgc ccaaagctag tgaaacaaca
     1981 aaaccttttt aggaaatgtc ttattaagtg tctttatttc atgcttttct aaaggaaagt
     2041 gaaaaatagc atttgttgtc acagaagtgc taaagctggc aaatctcagg tggggaagca
     2101 tgcagggtgt gactcagagg taggggtaag atcgaggtag gaactactgg gcaaaatatg
     2161 acctcccaca gacagacggg gccctcccgc agacagggtc cttccacaga cggagcccca
     2221 acactgagcc cgtaacagcc attgaactgg ccatgctaga acacaatgaa tgtctctgca
     2281 actcagtctg gttcaggcca agaagtaaag ggaaaaccat tcagttagtg agaaaagaga
     2341 tctctcagag gctggattcc acaagctgc
//
