LOCUS       XM_008760487            3342 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus stearoyl-coenzyme A desaturase 3
            (Scd3), mRNA.
ACCESSION   XM_008760487
VERSION     XM_008760487.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008760487.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008760487.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3342
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3342
                     /gene="Scd3"
                     /note="stearoyl-coenzyme A desaturase 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 56 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:681458"
                     /db_xref="RGD:1595370"
     CDS             16..1068
                     /gene="Scd3"
                     /codon_start=1
                     /product="acyl-CoA desaturase 3"
                     /protein_id="XP_008758709.3"
                     /db_xref="GeneID:681458"
                     /db_xref="RGD:1595370"
                     /translation="MTPSYTTTSTITEPPSGVMQKGKEKLKTLPLYLEEDIRPEMRED
                     IHDPSYQDEEGPPPKLEYVWRNIILMALLHVGALYGITLIPSSKVYTLLWAFIYYAIS
                     IEGIGAGVHRLWSHRTYKARLPLRIFLIIANTMAFQNDVYEWARDHRAHHKFTETHAD
                     PHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYYKPGILLLCF
                     ILPTLVPWYFWGETFLHSFYVATLLRYAVVLNVTWLVNSAAHLYGYRPYDKNIDPREN
                     ALVSLGTLGEGFHNYHHAFPYDYSASEYPWHINFTTFFIDCMAFLGLAYDRKRVSKAT
                     VLARIKRTGDGSHKSG"
ORIGIN      
        1 tctttgtctt catagatgac tccttcatac acaaccacct ccaccatcac agagcctccc
       61 tctggagtca tgcagaaagg aaaagaaaaa ttaaagactc tgcccctcta cctggaagaa
      121 gacatccgtc ctgaaatgag agaagatatc cacgacccca gctaccagga tgaggagggg
      181 cccccgccca agctggagta cgtctggagg aacatcatcc tcatggccct gctgcacgtg
      241 ggagccctgt acgggatcac actgatcccc tcctccaagg tctacacctt gctctgggca
      301 ttcatctact atgcgatcag tattgagggc attggagctg gagttcatcg cttgtggagc
      361 cacaggactt acaaggctcg cctgcccctg agaatcttcc tcatcattgc caacaccatg
      421 gctttccaga acgatgtgta tgaatgggcc cgggatcacc gcgcccacca caagttcaca
      481 gaaacacacg ccgaccctca caactcccgc cgtggctttt tcttctctca cgtgggttgg
      541 ctgcttgtgc gcaaacaccc ggctgtcaaa gagaagggcg gaaagctgga catgtctgac
      601 ctaaaagctg agaagctggt gatgttccag aggaggtact acaagcccgg catcctgctc
      661 ttgtgcttca tcctgcccac gctggtgccc tggtatttct ggggtgaaac ttttctacac
      721 agtttttatg ttgccacctt actgagatat gccgtagtgc tcaacgtcac ctggctggtg
      781 aacagtgccg cccacctcta tggatatcgc ccctacgaca agaacattga tccccgggag
      841 aatgccctgg tttccttggg gactctgggc gagggcttcc acaactacca tcacgccttc
      901 ccctacgact actctgccag tgagtacccc tggcacatca acttcaccac gttcttcatc
      961 gactgcatgg ctttcctagg cctggcttac gaccggaaga gggtgtccaa ggccactgtc
     1021 ttagccagga ttaagagaac tggagatggg agccacaaga gtggctgagt ttgaaatcat
     1081 tctcttctga aagccagctg gatggggggt tgacaatgtt taaatactga aaagaagcag
     1141 ccatgttgta caaagtccca tttcaataca gtatcctagt atattcaatc ttaaaaggca
     1201 gaaactttct cttatgttcc taagcagttc ttctgttctt agtcttgtat tccagggatc
     1261 atttggttgc ctgatccttc ttattatctt actgcttttc taggagagct gagcaatagg
     1321 acggaacaga actttgaaaa acacagcaaa tgttttaaat taaaggacct gaccaatagc
     1381 actctttcct tggtctctct tgagcctcaa ggtagctgtc cagctaaagc tctgaccagg
     1441 gcttcctggg tgttctctgt taactcccat caggccacag aaaagacaca cacacacaca
     1501 cacacacaca cacacacaca cacacacaca cacacacaca ctacatacac atgcaccacc
     1561 aaaaagacaa caagaaactc taacctttcc ttggcactga gcttgcgttg cattaaaata
     1621 tcagggaggt gaactaccct gcaggtcagg tgttaagcag gggtgatgtg acatgcaatg
     1681 agttataaaa atgttctttc tgtggtcaga cctagctgct tcccaagcga caggaagctg
     1741 gtcacacaac atccctcctt tctgccctga gccccagagc ttggcaatga aactcttccc
     1801 acttcaagac agagatggac aggttgaagg atagtgttgg taggcagatt ctgagataac
     1861 ttcttcagga aaaaaaaatc tgttcgggtt gacgattacc tcagaaacag tttcaacgct
     1921 aggtcccgtt cttagtccaa tttgctcctt gggttgataa aatccagatt cccaacacag
     1981 tatcttgctt tattgcctca ttccttttat gaagttttac gttcctaggt cagtgaacct
     2041 tggttgtata taattggttt aatgaaacag ccggaagagg caaggcaggc tgcttaggga
     2101 agagtttcat taacagtctt cctccattat ggacgcagta ttcagcacac tgactggtca
     2161 ggcaatgtgt agcaagtcca ggaggtgggt aatcaacaca ctgattcatg agtagatggg
     2221 agacccactc cctagaagga gattcaccct cagaaagccc gtggctgggg gacagtgaga
     2281 tggctaagca gggaaagggg cttgcaggaa aagcctgagg acctaaggtc aatcccgaga
     2341 ctgtgtaaaa agctgagtgt agtagtgcgt ttctgtactt ccagcactcc tgtagagaga
     2401 cgggaggcat gaaagggaga acagtctaga agtttgctgg ccagtcagct gtgagtatct
     2461 gggcaagaga gatcctgact cagaaacaag gtaaaagaac tgactctcaa aagttgtcct
     2521 gtgacctgca catgtatacc ccacatgtgt atatgtaccc catatataca caccacacac
     2581 atgcacacac acacacacac acacacacaa tgctactaat ttttaaaaaa ccctgcaact
     2641 gtagagttcc tagtcattag tggggaagct attataggtg tttctgtact caatgtatcc
     2701 atcaaatcta tacttaatgt atccatcgaa tctatactta gtgtatccat cgaatctata
     2761 cttaatgtat ccatcgaatc tatacttaat gtatccatcg aatctatact taatgcatcc
     2821 atcgaatcta tacttaatgt atccatcgaa tctatactta atgtatccat cgaatctata
     2881 cttaatgtat ccatcgaatc tatacttaat atatccattc aatcgccttc tgaacaaata
     2941 tggttttgcc tgtagatttg tgttatagga catttgatca cactgtgaac cctgagattg
     3001 tgcaatttac tgtaaaaacc tatttctagt tgtgctgtgg ctcagctgtg gcacccatgt
     3061 ttaatccaaa gagttttctg taagcaggtt taaataaagt gaaccatagg tcaagaggca
     3121 gagcaagcaa ccagttgacg gggactgaac atagtggggg aaaaaggaga gtaagagaaa
     3181 gtcaggaggg cagatagaga gacacacagg aagtagatgg gagggacatt cggtgtgagg
     3241 ggattttgag atggtgtggg ggacagcttg ctcttttagg acgttgatta tggaggaagg
     3301 tcagctgtgt gctttttctg cctctttgag ttagccaact tt
//
