LOCUS       NM_001106312            3291 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus scavenger receptor family member expressed on
            T-cells 1 (Scart1), mRNA.
ACCESSION   NM_001106312 XM_219450
VERSION     NM_001106312.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3291)
  AUTHORS   Holm,D., Fink,D.R., Steffensen,M.A., Schlosser,A., Nielsen,O.,
            Moeller,J.B. and Holmskov,U.
  TITLE     Characterization of a novel human scavenger receptor cysteine-rich
            molecule SCART1 expressed by lymphocytes
  JOURNAL   Immunobiology 218 (3), 408-417 (2013)
   PUBMED   22795646
REFERENCE   2  (bases 1 to 3291)
  AUTHORS   Fink,D.R., Holm,D., Schlosser,A., Nielsen,O., Latta,M., Lozano,F.
            and Holmskov,U.
  TITLE     Elevated numbers of SCART1+ gammadelta T cells in skin inflammation
            and inflammatory bowel disease
  JOURNAL   Mol Immunol 47 (9), 1710-1718 (2010)
   PUBMED   20381152
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473953.1.
            
            On Oct 4, 2007 this sequence version replaced XM_219450.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5756307, SAMEA5760389
                              [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3291
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q41"
     gene            1..3291
                     /gene="Scart1"
                     /gene_synonym="Cd163l1; RGD1307378"
                     /note="scavenger receptor family member expressed on
                     T-cells 1"
                     /db_xref="GeneID:293591"
                     /db_xref="RGD:1307378"
     exon            1..362
                     /gene="Scart1"
                     /gene_synonym="Cd163l1; RGD1307378"
                     /inference="alignment:Splign:2.1.0"
     CDS             299..3286
                     /gene="Scart1"
                     /gene_synonym="Cd163l1; RGD1307378"
                     /note="CD163 molecule-like 1; scavenger receptor
                     cysteine-rich domain-containing protein SCART1"
                     /codon_start=1
                     /product="scavenger receptor cysteine-rich
                     domain-containing protein SCART1 precursor"
                     /protein_id="NP_001099782.1"
                     /db_xref="GeneID:293591"
                     /db_xref="RGD:1307378"
                     /translation="MRTTLWTLSLGSLLTLRAALIGTSSEDGQGNLRLAHRQSKCDGV
                     VLVRHQGEWGHLCNLEWTLAEASVVCRQLGCGPAVGAPKYVPLPGEMVQPWLHNVSCW
                     GNESSLWECSLGAWSQRACPHEWVVVALCANGTFREIRLVKGHSPCAGLPEIRNVNGV
                     DRLCGLHVEEATVFCRELECGHALQAPRQDVGVSKYMTCKGTEPTIRNCRLNNKLRGG
                     CNLLLDAEVVCSGHVEARLVGGDHSCSGRLEVLRGLTWGTVCHADLDLPTAHVICREL
                     GCGMAVSTLRGAQFGQGSGPVWLEAFRCVGNESMLFHCPQEPGHHCGHNQDVALTCSE
                     FRLVNGSSDCEGRVELQVQGAWAPLCAANWDLADAMVLCHQLNCGNAVSIPPGGHFGD
                     GDAPIWPDVFHCVGTEPHLLHCPASTLGAHSCVLGNTASTICSGLQDTLRLRDGQSYC
                     DGRVEISLNGSWGRVLDDIWDIRGASVVCRQLECGEAQGAYDAPAPGFRTAPVGLSQV
                     RCLGSETHLMQCNVSTSLLVPAATLRDAGVVCSGSLRMRLAAGPGRCAGRVEVFYQGS
                     WGTVCDDAWDLQDAQVVCRQLDCGHALSAPGNAHFGAGTGRIWMDELHCLGNESLLWK
                     CQSGNWGQHDCRHKEDAGVFCSESVALRLRGGTSGCVGWLDVLYNGSWGAVCSNALRD
                     ISLSIMCRQLGCGDQGWLENRPSPGPGLGISWVDKIKCRKLHNATLWQCPSAPWNPHS
                     CTQEEEVWINCEGLPQIGSQEPAQTPNCSSPLGCLEDSVLRVLGGEDGCSGRVELWHA
                     GSWGTVCDDSWDLLDAQVVCRQLGCGQALAALEGAAFGPGMGPVWLDEVECLGSEVTL
                     EACQAELWGHGDCTHKEDAGVRCAGVSTTTALSPSLTPPPVAEAWNLPEVACLVLGCL
                     LGIVFLAMIAQWCHIRDASMGSGMLGNLQSDGVYEDIEVVPVMKKEENAISRLLMLED
                     GYDDAEEPEGQPTESEEECNGHC"
     exon            363..695
                     /gene="Scart1"
                     /gene_synonym="Cd163l1; RGD1307378"
                     /inference="alignment:Splign:2.1.0"
     exon            696..989
                     /gene="Scart1"
                     /gene_synonym="Cd163l1; RGD1307378"
                     /inference="alignment:Splign:2.1.0"
     exon            990..1298
                     /gene="Scart1"
                     /gene_synonym="Cd163l1; RGD1307378"
                     /inference="alignment:Splign:2.1.0"
     exon            1299..1604
                     /gene="Scart1"
                     /gene_synonym="Cd163l1; RGD1307378"
                     /inference="alignment:Splign:2.1.0"
     exon            1605..1922
                     /gene="Scart1"
                     /gene_synonym="Cd163l1; RGD1307378"
                     /inference="alignment:Splign:2.1.0"
     exon            1923..2237
                     /gene="Scart1"
                     /gene_synonym="Cd163l1; RGD1307378"
                     /inference="alignment:Splign:2.1.0"
     exon            2238..2555
                     /gene="Scart1"
                     /gene_synonym="Cd163l1; RGD1307378"
                     /inference="alignment:Splign:2.1.0"
     exon            2556..2624
                     /gene="Scart1"
                     /gene_synonym="Cd163l1; RGD1307378"
                     /inference="alignment:Splign:2.1.0"
     exon            2625..2939
                     /gene="Scart1"
                     /gene_synonym="Cd163l1; RGD1307378"
                     /inference="alignment:Splign:2.1.0"
     exon            2940..2963
                     /gene="Scart1"
                     /gene_synonym="Cd163l1; RGD1307378"
                     /inference="alignment:Splign:2.1.0"
     exon            2964..3101
                     /gene="Scart1"
                     /gene_synonym="Cd163l1; RGD1307378"
                     /inference="alignment:Splign:2.1.0"
     exon            3102..3291
                     /gene="Scart1"
                     /gene_synonym="Cd163l1; RGD1307378"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cactctgcta aagtcagacg ggccacctgt ctggtgacag ggcctgggtg aggctctcct
       61 tcagtggtta tcagtatggg aggaaaccac cccatcccct tgctcatgtc tggtggtgct
      121 tgggatcagc aaggtcattg gctgttctgc tacagacgga gatgtagacc tgctggtgtg
      181 ctagggctct tgctgtaccc gtcggacatg ggctaacggt tctcttacac ctataaaact
      241 ggctctggga caagatctcc ttttttgcta cagctgaagc tctggactct gtgcagccat
      301 gaggacaaca ctctggactc tgagtttggg gtctcttctt actctcaggg cagctctcat
      361 tggcacatct tctgaagatg gccaaggcaa tctgaggctg gcacacaggc agagcaagtg
      421 cgacggagtg gtgctggttc gacaccaagg ggaatggggc catctgtgca acctggagtg
      481 gacactggca gaagcctctg tggtgtgtag acagctgggc tgtggccctg ccgttggcgc
      541 tcccaaatac gtgcccctgc ctggagagat ggtccagccc tggctgcaca atgtatcctg
      601 ttggggcaat gagtcctctc tctgggagtg tagccttggg gcatggagtc agcgtgcttg
      661 cccccatgag tgggtggtgg tggctctctg tgcaaatggc accttccggg agatccggct
      721 agtgaagggc cacagtccct gtgcaggact ccccgagatc aggaatgtga atggggtgga
      781 ccgcctctgt ggcctgcatg tggaagaggc cacggtgttc tgccgtgagc tggagtgtgg
      841 ccatgcactc caggcccccc gtcaagacgt gggtgtcagt aagtacatga cctgcaaggg
      901 cactgagccc accatccgta actgcagact taacaacaag ctacgtggag gctgcaacct
      961 gctgctggat gcagaagtgg tctgctcagg acacgtggag gcccggctgg tgggtggaga
     1021 ccattcttgt tctggacgcc tggaggttct tcggggactg acctggggta ccgtctgcca
     1081 tgctgatctg gacttgccca cagcccatgt gatctgtcgg gagttagggt gtggtatggc
     1141 tgtgtccaca cttaggggtg cccagtttgg ccagggctcg gggcctgtgt ggctagaagc
     1201 cttccgctgt gtggggaatg aatcgatgct gttccactgc cctcaggagc ctgggcacca
     1261 ctgcggccac aaccaggatg ttgcactcac ctgctcagag ttccggctag tcaatggtag
     1321 cagtgactgt gaaggccgag tggaactcca agtgcaaggg gcctgggcac ccctctgtgc
     1381 tgccaactgg gacctagcag acgccatggt tctctgtcac caactcaact gtggcaatgc
     1441 agtatccata cccccaggag gacattttgg tgacggggat gcccccatct ggccagatgt
     1501 atttcattgt gtggggacag agccccattt gcttcactgt ccagcaagca ccctgggggc
     1561 ccacagttgt gtcctgggaa atacagcttc caccatctgt tcaggactcc aagacaccct
     1621 gcggctgaga gatggacaga gctactgtga tggccgcgta gagatttccc tgaatggttc
     1681 atggggccgc gtattggatg acatctggga catacgtggt gccagtgtgg tgtgcaggca
     1741 gctagagtgt ggagaggcac agggagctta tgatgctcca gctcctggct tcaggacagc
     1801 ccctgtgggg ctgagccagg tgcgctgcct gggctctgag actcacctga tgcagtgcaa
     1861 tgtttctacc tccctgctgg tgcctgctgc gaccttgcgt gatgcaggag tggtatgctc
     1921 cgggagcctg cgcatgaggc tggctgcggg cccaggtcga tgtgctgggc gtgtggaagt
     1981 attctatcag ggctcatggg gcactgtgtg cgatgatgcg tgggaccttc aggacgcaca
     2041 agtggtctgt aggcaactgg actgtggcca cgccctcagt gctcccggga atgctcactt
     2101 tggggcaggg actgggcgca tctggatgga tgagctgcac tgcttgggaa atgagtcttt
     2161 gttgtggaag tgccagtcag gaaactgggg ccaacatgac tgcagacaca aagaagatgc
     2221 tggagtgttc tgctcagaat ctgtggctct gaggctgcga ggtggcacca gtggctgcgt
     2281 tggatggctg gacgtgctct acaatggatc ctggggtgct gtgtgcagca atgcactcag
     2341 agacatctcc ttgagcatca tgtgcagaca gctgggatgt ggggaccagg gctggctgga
     2401 gaacaggccg tctcctgggc ctggcttggg aatctcctgg gtggataaga tcaagtgtcg
     2461 aaagctacac aatgccactc tgtggcagtg cccttctgcc ccatggaacc cacactcctg
     2521 tacccaggag gaggaggtct ggattaactg tgaaggactg ccacagatag gttcacagga
     2581 gcccgcacag acccctaact gctcttcccc acttggctgc ttagaggaca gcgtattgcg
     2641 tgtgctcgga ggcgaggatg gctgttccgg gcgtgtggag ctctggcacg caggctcgtg
     2701 gggcacagtg tgtgatgact cctgggacct gctggatgcc caggttgtgt gccggcagct
     2761 gggctgtggc caggccttag ctgctttgga aggtgccgcc tttggccctg gtatggggcc
     2821 tgtgtggttg gatgaggtgg agtgccttgg cagcgaggtg accttggagg cctgccaggc
     2881 tgagctctgg ggacacggag actgcacgca caaggaggat gcaggtgttc gttgtgcagg
     2941 tgtctccaca accactgcat tgtctccttc cctgacgcct ccacccgttg ctgaggcctg
     3001 gaacctgcct gaggttgcct gcttggtgct tggctgcctc ctgggcattg tcttcctggc
     3061 tatgattgcc cagtggtgtc acatcagaga tgctagcatg ggttctggca tgttggggaa
     3121 tctacagtca gatggtgtct atgaggacat tgaagttgtc cctgtgatga agaaagagga
     3181 gaacgcaata tccaggctgc tgatgctgga agacggttat gatgatgctg aagagcccga
     3241 gggtcagcct acagagagtg aggaggagtg caatgggcac tgctgagctt g
//
