LOCUS       NM_001105864            3312 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus scavenger receptor class F, member 2 (Scarf2),
            mRNA.
ACCESSION   NM_001105864 XM_001063335 XM_237825
VERSION     NM_001105864.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3312)
  AUTHORS   Kuo JC, Han X, Hsiao CT, Yates JR 3rd and Waterman CM.
  TITLE     Analysis of the myosin-II-responsive focal adhesion proteome
            reveals a role for beta-Pix in negative regulation of focal
            adhesion maturation
  JOURNAL   Nat Cell Biol 13 (4), 383-393 (2011)
   PUBMED   21423176
REFERENCE   2  (bases 1 to 3312)
  AUTHORS   Ishii J, Adachi H, Aoki J, Koizumi H, Tomita S, Suzuki T, Tsujimoto
            M, Inoue K and Arai H.
  TITLE     SREC-II, a new member of the scavenger receptor type F family,
            trans-interacts with SREC-I through its extracellular domain
  JOURNAL   J Biol Chem 277 (42), 39696-39702 (2002)
   PUBMED   12154095
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473999.2.
            
            On or before Oct 3, 2007 this sequence version replaced
            XM_237825.4, XM_001063335.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3312
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q23"
     gene            1..3312
                     /gene="Scarf2"
                     /note="scavenger receptor class F, member 2"
                     /db_xref="GeneID:287949"
                     /db_xref="RGD:1306013"
     exon            1..248
                     /gene="Scarf2"
                     /inference="alignment:Splign:2.1.0"
     CDS             100..2601
                     /gene="Scarf2"
                     /codon_start=1
                     /product="scavenger receptor class F member 2 precursor"
                     /protein_id="NP_001099334.1"
                     /db_xref="GeneID:287949"
                     /db_xref="RGD:1306013"
                     /translation="MEGAGSRGAGPARRQGARGPPLLLLLWLLPGLAAAQDLNPRGRN
                     VCRTPGSQVLTCCAGWRQLGDECGIAVCEGNSTCSENEVCVRPGECRCRHGYFGANCD
                     TKCPRQFWGPDCKERCSCHPHGQCEDVTGQCTCHARRWGARCEHACQCQHGTCHPRSG
                     ACRCEPGWWGAQCASACYCSATSRCDPQTGACLCHAGWWGRSCNNQCSCNSSPCEQQS
                     GRCQCRERTFGARCDRYCQCFRGRCHPVDGTCACDPGYRGKYCREPCPAGFYGLGCRR
                     RCGQCKGQQPCTVVEGRCLTCEPGWNGTKCDQPCATGFYGEGCGHRCPPCRDGHACNH
                     VTGKCTHCNAGWIGDRCETKCSNGTYGEDCAFVCSDCGSGHCDFQSGRCLCSPGVHGP
                     HCNVTCPAGLHGVDCAQACSCHEESCDPVTGACHLETNQRKGVMGAGALLTLLLGLLL
                     SLLGCCCACRGKDSARRELTLGRKKAPQRFCGSFSRISMKLPRIPLRRQKLPKVVVAH
                     HDLDNTLNCSFLEPPSGLEQPSPSWSSRASFSSFDTTDEGPVYCVPHEEATAENRDPE
                     ASASLTEVPAVSLAPMGTSVPGDEAAALPASSDSERSASSVEGPGGALYARVARREAR
                     PARTRCEAGGLSLSPSPERRKPPPPDPATKPKVSWIHGKQGAVAAAPSPPPAGRKAAP
                     SPSGRKRTPSNMSVQPPGLTEEATGPASPTPPRARARGRGPGLLEPTDAGGPPRSAPE
                     AASMLAAELRDKTRSLGRAEKPPPPQKAKRSVLPASTARAASASEASASEKVAASAPE
                     PETPRKKTPIQKPPRKKSREAAGEPSRAGAAPGAS"
     exon            249..307
                     /gene="Scarf2"
                     /inference="alignment:Splign:2.1.0"
     exon            308..409
                     /gene="Scarf2"
                     /inference="alignment:Splign:2.1.0"
     exon            410..929
                     /gene="Scarf2"
                     /inference="alignment:Splign:2.1.0"
     exon            930..1148
                     /gene="Scarf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1149..1277
                     /gene="Scarf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1278..1381
                     /gene="Scarf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1382..1499
                     /gene="Scarf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1500..1615
                     /gene="Scarf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1616..1768
                     /gene="Scarf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1769..3312
                     /gene="Scarf2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggcgcccct cctgccgccc cccgcccggc ctcgcactcc gcttccggcc gctcttgccg
       61 cggccgcacc cgcgcccacc cgcgcctgcc ccgcgcctca tggagggcgc agggtcccgg
      121 ggggccgggc cggcgcggcg ccagggagcc cgagggccgc cgctgctgct gctgctctgg
      181 ctgctgcccg gtctcgcggc ggcccaggac ttgaacccgc gaggccgcaa cgtgtgccgc
      241 acgcccggtt ctcaggtgct cacgtgctgc gctggctgga ggcagctggg ggatgagtgt
      301 gggatcgcgg tgtgtgaagg caattccacg tgctcagaaa atgaggtgtg cgtgcggcca
      361 ggcgagtgcc gctgccgaca tggctacttc ggtgccaact gcgacactaa gtgcccgcgc
      421 cagttctggg gccccgactg caaggagagg tgcagttgcc atccgcacgg acagtgcgag
      481 gacgtgaccg gacagtgtac gtgtcacgcg cgccgctggg gtgcgcgctg cgagcatgct
      541 tgccagtgcc agcatggcac gtgccacccg cggagcggcg cgtgccggtg cgagccgggc
      601 tggtggggtg cacaatgcgc tagcgcctgc tactgcagcg ctacttcgcg ctgcgatcca
      661 cagacaggcg cctgcctgtg ccacgcaggc tggtggggcc gcagctgcaa caaccagtgc
      721 tcctgcaact cgtcgccctg cgagcagcag agcggccgct gccagtgtcg cgagcgcacg
      781 ttcggcgcgc gctgtgatcg ctattgccag tgcttccgcg gtcgctgcca cccggtggac
      841 ggcacgtgcg cctgcgaccc gggctaccgg ggcaagtatt gtcgtgagcc atgccccgct
      901 ggcttctacg gcctcgggtg tcgccgtcgg tgtggccaat gcaaaggcca gcagccgtgc
      961 acagtagtcg aaggccgctg tctgacgtgc gaacccggct ggaacggaac caaatgtgac
     1021 caaccctgcg ccactggttt ttatggcgag ggttgtggcc accgctgtcc accctgccgc
     1081 gatgggcatg cctgcaacca tgtcaccggc aagtgtacgc actgcaatgc gggctggatc
     1141 ggcgaccggt gcgagactaa gtgcagtaat ggcacttacg gtgaggactg tgccttcgtg
     1201 tgttctgact gcggcagcgg ccactgtgac ttccagtccg ggcgctgcct ttgcagccct
     1261 ggtgttcacg gacctcactg taatgtaact tgcccggccg ggctccatgg tgtggactgc
     1321 gcccaggcct gcagctgtca cgaggaatca tgcgacccgg tcaccggggc ctgccacctg
     1381 gagaccaatc agcgcaaagg tgtgatgggc gccggcgcgc tgctcacgct gctcctcggc
     1441 ctgctgctct cgctgctcgg ttgttgctgt gcctgccggg gcaaggactc ggcgcgccgg
     1501 gagctcaccc tcggaaggaa gaaggcacct caacgctttt gtggaagctt cagccgcatc
     1561 agcatgaagc taccccgaat cccgcttcgc aggcagaagc tgcccaaagt cgtagtggcc
     1621 catcatgact tagacaacac gctcaactgc agtttcctgg aaccaccttc agggctggag
     1681 cagccctctc catcatggtc ctccagggcc tccttctcat catttgacac cacagatgaa
     1741 ggccctgtgt actgtgtgcc ccacgaggag gcgactgctg agaaccgaga cccagaagct
     1801 tctgcctctc tcactgaggt gcccgctgtg tccctagcgc ccatgggcac ttcggtgccc
     1861 ggggatgagg cagcagccct ccctgcatcc tcagacagcg agcgctcagc atcaagcgtg
     1921 gaggggccgg gcggggcgct gtacgcgcgt gtggcccggc gcgaggcccg gccggcccgg
     1981 acccgatgtg aggctggggg cttgtcactg tccccatcgc ccgagcgcag gaagccaccg
     2041 ccacccgacc ctgccaccaa gcctaaggtg tcctggatcc acggcaagca aggcgccgtg
     2101 gccgctgcac cttcgccgcc gcccgcaggc cgcaaggctg cgccgagccc tagcgggagg
     2161 aaacggaccc ccagcaacat gtcggtgcag cccccgggcc tgaccgaaga agccaccggc
     2221 ccggcctcac ccacgccacc ccgcgcccga gcgcgcggcc gcggcccggg tctcttggag
     2281 cccacggacg cgggaggtcc cccgcgcagt gcgcccgagg ccgcctctat gctggcagcc
     2341 gagctgcgcg acaagactcg cagcctgggt cgcgccgaga agccgccgcc gcctcagaag
     2401 gccaagcgct ccgtgctccc ggcgtcgacc gcccgcgcgg cttcggcgtc cgaagcctcg
     2461 gcgtctgaga aggtggcagc cagcgcacct gagcccgaga cacctcggaa gaagaccccc
     2521 atccagaaac cgcctcgaaa gaagagcagg gaggctgcgg gggagccgag cagggcgggc
     2581 gcggcccccg gagcttccta ggctcgcagc cccaggagcc actgcgtttc tcaccgtcgt
     2641 ttccccgcgc agtcgcagcg aaggcatttc attggcccga gcgcccagtg cccgctcgag
     2701 cctgtgtctg attggcttag gctccagcag cctccacgtg gttggatctg cccttgggcc
     2761 tcgcagacac ttagctggct acccgctccc actagcaaac ttgtggagct tttttagtaa
     2821 tctgcgtctc cttggccata gcttgaggag tctacagact tcttactggc caagaagagt
     2881 gttcttgcct gggccacctt gtcattggcc gatgccagca gcgcttctgc ttcttggctg
     2941 cctctcattt gccaaggcct ggtgcctatg gctgtagggt ctttttcttt gtagatagtc
     3001 agaggttgct tccattaact gggctcccca gtatctggtt gacccaaacc tggggagcag
     3061 agctggtttc tgctcctcag ggggctcagc catgttggct tgtccccttc ccactcactc
     3121 atgccagccc tggtccctca gccatcgagc tggttttgat ggcttcctat caccccacga
     3181 gggaacccca ggggctactc tggtggccgt agatgtattt ataggccccg ggcagggctt
     3241 ctcccttccc atctgaggcc ttcaggatgg gctcctccta gcaggccaaa gctttcttta
     3301 ataaaatgct tc
//
