LOCUS       NM_001107022            2866 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus scavenger receptor class F, member 1 (Scarf1),
            mRNA.
ACCESSION   NM_001107022 XM_001057528 XM_001080497 XM_001080505 XM_220712
VERSION     NM_001107022.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2866)
  AUTHORS   Xu XS, Feng ZH, Cao D, Wu H, Wang MH, Li JZ and Gong JP.
  TITLE     SCARF1 promotes M2 polarization of Kupffer cells via
            calcium-dependent PI3K-AKT-STAT3 signalling to improve liver
            transplantation
  JOURNAL   Cell Prolif 54 (4), e13022 (2021)
   PUBMED   33686740
  REMARK    GeneRIF: SCARF1 promotes M2 polarization of Kupffer cells via
            calcium-dependent PI3K-AKT-STAT3 signalling to improve liver
            transplantation.
REFERENCE   2  (bases 1 to 2866)
  AUTHORS   Yao C, Chen Y, Wang J, Qian T, Feng W, Chen Y, Mao S and Yu B.
  TITLE     LncRNA BC088259 promotes Schwann cell migration through Vimentin
            following peripheral nerve injury
  JOURNAL   Glia 68 (3), 670-679 (2020)
   PUBMED   31721324
  REMARK    GeneRIF: LncRNA BC088259 promotes Schwann cell migration through
            Vimentin following peripheral nerve injury.
REFERENCE   3  (bases 1 to 2866)
  AUTHORS   Hasegawa H, Abbott S, Han BX, Qi Y and Wang F.
  TITLE     Analyzing somatosensory axon projections with the sensory
            neuron-specific Advillin gene
  JOURNAL   J Neurosci 27 (52), 14404-14414 (2007)
   PUBMED   18160648
REFERENCE   4  (bases 1 to 2866)
  AUTHORS   Shibata M, Ishii J, Koizumi H, Shibata N, Dohmae N, Takio K, Adachi
            H, Tsujimoto M and Arai H.
  TITLE     Type F scavenger receptor SREC-I interacts with advillin, a member
            of the gelsolin/villin family, and induces neurite-like outgrowth
  JOURNAL   J Biol Chem 279 (38), 40084-40090 (2004)
   PUBMED   15247299
REFERENCE   5  (bases 1 to 2866)
  AUTHORS   Adachi H, Tsujimoto M, Arai H and Inoue K.
  TITLE     Expression cloning of a novel scavenger receptor from human
            endothelial cells
  JOURNAL   J Biol Chem 272 (50), 31217-31220 (1997)
   PUBMED   9395444
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473948.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001080505.1, XM_001080497.1, XM_220712.4, XM_001057528.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5756307,
                              SAMEA5760383 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2866
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..2866
                     /gene="Scarf1"
                     /note="scavenger receptor class F, member 1"
                     /db_xref="GeneID:303313"
                     /db_xref="RGD:1309330"
     exon            1..120
                     /gene="Scarf1"
                     /inference="alignment:Splign:2.1.0"
     CDS             8..2479
                     /gene="Scarf1"
                     /note="endothelial cells scavenger receptor"
                     /codon_start=1
                     /product="scavenger receptor class F member 1 precursor"
                     /protein_id="NP_001100492.1"
                     /db_xref="GeneID:303313"
                     /db_xref="RGD:1309330"
                     /translation="MLTAMGLGLVFSLLLFWTREIQGSTLDPAGQHVCIGSSPSELQC
                     CSGWRQKDQECTIPICEGPDACKKDEVCVKPGLCRCKPGFFGAHCSSRCPGQYWGPDC
                     RETCPCHPRGQCEPATGVCQCQPNYWGKLCEFPCTCGPHGKCDPKTGLCHCDPGWWSP
                     TCRRPCQCNPLARCDQVTGACICPTGWWGHRCSFSCNCHTSPCLQDSGRCTCLQGWWG
                     PECSRRCQCVRGQCSVTSGHCSCPPGFQGALCELPCKPGRYGAQCKESCGHCEPNATC
                     SPVTGNCESCKPGWNGTQCKQPCPPGTFGERCTGKCPRCRLEEPCQVETGHCQRCDPG
                     WLGHRCEKPCPLGTFGKGCSSTCPACVQGTCNAVTGECVCSAGYWGTSCNSSCPSGFH
                     GNNCSMPCQCPEGLCHPESGACQLGPHGKNALIVGILVPLLLLLMGIICCVYCCSASR
                     LDPKDRPERNGAAFFRMKQQVWGALTSLGSALPCGSLSNYKLPWVTVSHHDPEVPFNH
                     SFIEPPSAGWASDDSFSSDPDSGEEDEAHAYFMPPREETVPMTQEESPAASLPGGPFP
                     PPEDASTPFPIPRTSSLARAKRPSVSFAEGTKFAPQNGRSSGDLSSPIRKPKRLSRGA
                     QPRPEGQEAEESTGPEQENPEEDVPTATSSGDAATSHGQLPPGSRTVTECVETTDGGI
                     QESSGSVATIYMLAGTPQKPEGPVWSVFRRLGNYQKDQAAPKVKSAIPKPLRRSLGRN
                     QASSGLSQSSGSAPGAVLSGAMESTAVKPEEASRGLGDGIESLGTVQEPVVGSSSPEQ
                     GSQKQAEEQEQEEPLYENVVPMLQH"
     exon            121..179
                     /gene="Scarf1"
                     /inference="alignment:Splign:2.1.0"
     exon            180..281
                     /gene="Scarf1"
                     /inference="alignment:Splign:2.1.0"
     exon            282..804
                     /gene="Scarf1"
                     /inference="alignment:Splign:2.1.0"
     exon            805..1023
                     /gene="Scarf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1024..1152
                     /gene="Scarf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1153..1256
                     /gene="Scarf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1257..1374
                     /gene="Scarf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1375..1496
                     /gene="Scarf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1497..1643
                     /gene="Scarf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1644..2866
                     /gene="Scarf1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcctactatg ctgaccgcca tgggactagg gctggtgttc tcactgttgc tgttctggac
       61 tcgggagatc cagggatcca cgctagatcc agctggtcag cacgtctgta taggcagcag
      121 cccctctgag ctccagtgtt gttcgggctg gaggcagaag gaccaagaat gcaccatccc
      181 catctgtgag gggcctgatg cctgcaagaa agatgaggtg tgtgtgaagc cgggcctctg
      241 tcgatgtaaa cctggattct tcggagccca ttgcagctcc cgctgtccag gccagtactg
      301 gggccccgac tgtcgtgaga cctgcccttg ccatccacgt ggccagtgcg aaccagccac
      361 gggtgtgtgc cagtgccaac ccaactactg gggcaagctc tgtgagttcc cctgcacctg
      421 cggcccccac ggaaaatgtg acccaaagac gggcttgtgc cactgcgacc ccggctggtg
      481 gtcacctacg tgtcgtcgcc cctgccaatg caacccatta gcgcgctgtg accaggtcac
      541 tggagcctgc atatgcccga cgggctggtg gggccaccgc tgcagcttca gttgcaactg
      601 ccatacctcg ccctgccttc aggactccgg ccgttgcacc tgcctgcagg gctggtgggg
      661 tccagagtgt agtcgcaggt gccagtgtgt gcgaggacaa tgcagcgtta cttccggcca
      721 ctgctcctgc cctcctggct tccaaggagc cctctgtgag ctgccttgca agcccggccg
      781 ctatggagcg cagtgcaaag aaagctgtgg ccactgtgag ccgaatgcca cgtgctctcc
      841 agtcaccggc aactgtgagt cctgcaagcc gggctggaac ggaactcagt gcaagcagcc
      901 atgtcctcca ggcacctttg gtgagaggtg cactgggaag tgcccccgct gccgacttga
      961 agagccctgt caagtggaaa ctgggcactg ccagcgctgc gaccctggtt ggctggggca
     1021 caggtgtgag aaaccttgtc cccttggtac ctttgggaag ggctgcagct ctacctgccc
     1081 tgcctgtgtt caggggactt gcaatgcggt gactggggaa tgtgtctgca gtgctggcta
     1141 ctgggggacc agctgcaata gttcctgccc ttctggcttc cacggaaaca actgttctat
     1201 gccctgccaa tgcccagagg ggctctgcca ccctgagtct ggggcctgcc agctgggccc
     1261 acatggtaaa aatgccctca ttgtgggcat cctggtacct ctgctgctgc tcctcatggg
     1321 cattatctgc tgtgtctact gctgctcagc ttcccgactg gaccccaagg acaggcctga
     1381 gagaaatgga gctgcctttt tcaggatgaa gcagcaggtg tggggggccc tcaccagcct
     1441 gggctcggca ctgccctgtg gctccctcag taactacaag ctaccttggg tgacagtttc
     1501 tcaccatgat ccagaggttc ccttcaacca cagtttcatc gagccaccct ctgctggctg
     1561 ggcctctgac gactctttct cgtctgatcc cgactctgga gaagaggacg aagctcacgc
     1621 ctacttcatg ccacctcgag aagagacagt ccctatgacc caagaagaat caccagcagc
     1681 cagccttcct ggaggcccct tccctccccc tgaggacgcc tccacaccat tccccatccc
     1741 acgcacctcc agcctggctc gggccaagag gccatccgtc tcctttgctg aaggcactaa
     1801 gtttgcacca caaaatggcc gaagctctgg ggatctctcc agccccatac gaaaacccaa
     1861 gagactctcc agaggtgctc agccacgtcc tgaagggcaa gaggctgagg agtctacagg
     1921 cccagagcaa gaaaacccag aagaggatgt tcctacagcc acaagctctg gagatgctgc
     1981 cactagtcac ggccaacttc cacctggtag ccggacagtg accgaatgtg tggaaaccac
     2041 cgatggaggc atccaggaga gctcagggtc tgtggccact atctatatgc tggcagggac
     2101 accccagaaa cctgagggcc ctgtctggtc tgtctttcgt cgtttgggaa actaccagaa
     2161 agatcaggcg gcgcccaagg taaagagtgc catccctaag cctttgcgcc gatctctggg
     2221 tcggaaccag gccagctccg ggctgtccca gagctctggc tcagctccag gtgctgtgct
     2281 ctccggggcc atggagtcca ccgcagttaa gccagaggaa gcatccagag gtctgggaga
     2341 tggcattgag agcttaggga cagtccagga gccagtcgtt ggaagcagtt ccccggagca
     2401 gggttcccag aagcaggctg aagaacagga acaggaggag cccctgtatg agaatgttgt
     2461 gcccatgctg cagcattgag gaccttgagt ttggtgagtg ggaagagtgt ggctggggat
     2521 acaggatgca gtgagagcag ggtgctgaag ctgatgtgga ccagattggg ctttgtgccg
     2581 gaaaatgatg ccaaagctga gacagactag acagaaactc tgccctggaa gaggcaaggg
     2641 ttagaggcca gctggctgtg ggtctggccc tggctgtgtc cccaggtggg actagaaggc
     2701 ctgagcggag accctgtgta acagggtcag aggaaggagg agacggctac agggcttttc
     2761 ctccgttgtc ctggattcca tcccaagact attcatcact tcaaaacatt tttttcttct
     2821 gaaatggaaa acaacctaga tgtttgatga taaagtttga ttaaac
//
