LOCUS       XM_039082385            5300 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus S-phase cyclin A-associated protein in
            the ER (Scaper), transcript variant X3, mRNA.
ACCESSION   XM_039082385
VERSION     XM_039082385.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5300
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5300
                     /gene="Scaper"
                     /note="S-phase cyclin A-associated protein in the ER;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 37 ESTs, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:117521"
                     /db_xref="RGD:621585"
     CDS             154..4380
                     /gene="Scaper"
                     /codon_start=1
                     /product="S phase cyclin A-associated protein in the
                     endoplasmic reticulum isoform X1"
                     /protein_id="XP_038938313.1"
                     /db_xref="GeneID:117521"
                     /db_xref="RGD:621585"
                     /translation="MMASFQRSNSHDKVRRIVAEEGRTARNLIAWSVPLESKDDDGKP
                     KCQTGGKSKRTIQGTHKTTKQFHLFHQNTSVECKITSTTGEKHFDKSPTKTRHPRKID
                     LRARYWAFLFDNLRRAVDEIYVTCESDQSVVECKEVLMMLDYYVRDFKALIDWIQLQE
                     KLEKTDAQSRPTSLAWEVKKMSPGRHVIQSPSADRMNVTSTARRSLNFGNLPGAVTAP
                     CLAPTGVSWADKVKAHHTGSSTSEVTAAQPCAPMAVQKTSRKNERKDAEGWETVQRGR
                     PVRSRSTAVMPKVSLVTEALRAKDDSDKENICLLPEESIQKGKPVEDRCAPAESPSKD
                     SLHPSDHPLSERIQFTVSILDDVKNSGSSQDNSVHTSEIPAIHSDVVCVAVTPQTTTA
                     LPTDKDRVPAETVGMVTETTDPSDISNVSAADWSMAEVLAKKEELADRLEKANEEAIA
                     SAIAEEEQLTREIEAEENNDINIETDNDSDFSASMGSGSLSFCGMSLDWNDVLADYEA
                     RESWRQNTSWGDIVEEEPARLPGHGIHMHEKLSSPSRKRTIAESKKKYEEKHMKAQQL
                     REKLREEKSLKLQKLLEREKDVRKWKEELLDQRRRMMEEKLLHAEFKREVQLQAIVKK
                     AQEEEAKVNEIAFINTLEAQNKRHDVLSKLKEYEQRLNELQEERQRRQEEKQARDEAV
                     QERKRALEAERQARVEELLTKRKEQEARIEQQRQEKEKAREDAARERARDREERLAAL
                     TAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEKAAELSSGRHASTDYAPKLTPYE
                     RKKQCSLCNVLIASEVYLFSHIKGKKHQQAVRENSSIQGRELSDEEVEHLSLKKYVVD
                     IVIESAAPPEPMKDGEERQKNKKKAKKIKARMNTRAKEYENSVETKNSGSESPYKAKL
                     QRLAKDLVKQLQVQDSGSWVNNKASALDRTLGEIARILEKENVADQIAFQVAGGLTAL
                     ENILQVVAPATNMNTVSRIPPKSLCNAINVYNLTCSNCSENCTDVLFSNKITFLMDLL
                     IHQLTVYIPDENNAVLGRNTNKQVFEGLTTGLLRAGAVVFSCLIANRPDGNSRPATPK
                     ISTQEMKNKPSQGDAFNSRVQDLISYVVNMGLIDRLRGCFLSVQGPVDENPKMATFLQ
                     HAAGFLRGICMLCFTVTGRSSSIFDSNHQDPTGLTAALQATDLAGVLHMLYCILFHGT
                     ISDASTSPKESYTQNTIQVAIQSLRFFNSFAVLDLSAFQSIVGAEGLSLAFRHMASSL
                     LGHCSQVSCESLLHEVIVCVGYFTVNHPDNQVIVQSGRHPTVLQKLCQLPFQYFSDPR
                     LIKVLFPSLIAACHNNHQNKLILEQEMSCVLLATFIQDFAQTPGHVDNQSSNPKGKCG
                     NPGDYLELANRFPQQAWEEARQFFLKKEKK"
ORIGIN      
        1 ttattttttt ttttaagtaa tgagctgtgt ttttatacca ccgtggattt tgggacattg
       61 tgattaccct gaaagataac ctgttctcat ttaaggaatt ataacccatg gaattgtgtg
      121 gtaaataatc ttgccactgg agagaattaa agaatgatgg cttccttcca gcgctccaat
      181 agtcatgaca aagtgaggag aattgttgct gaagagggtc gtacagcaag aaacctgata
      241 gcttggagtg ttccactaga aagcaaagat gatgatggaa aacctaaatg tcaaactggt
      301 ggaaaatcta agaggacaat tcaaggcact cataaaacca ctaaacagtt tcatttattt
      361 catcagaata cttcagtaga atgtaaaata acatccacaa ctggagagaa acattttgat
      421 aaaagtccga caaaaacaag gcacccacgg aaaattgacc taagagctcg ctattgggca
      481 tttctttttg acaatcttcg ccgggcagta gatgaaatct atgtgacttg tgaatcagat
      541 cagagtgtgg tagaatgtaa ggaggtgcta atgatgctgg attactatgt gagagatttt
      601 aaagcattga ttgactggat tcaacttcag gaaaagttag agaagacaga tgctcaaagc
      661 agaccaacct cactggcgtg ggaagtaaag aagatgtctc caggacgtca tgtgatccaa
      721 agcccatcag cagatagaat gaatgtaaca tcaactgcaa gaagaagctt aaactttggg
      781 aatttacctg gtgcagtaac tgccccatgt ctggctccca caggtgtcag ttgggctgac
      841 aaggtaaagg cgcatcacac tggttcttcc acttctgagg taacagctgc tcagccctgt
      901 gcaccaatgg cagtgcagaa aacttcccgg aaaaatgaac ggaaagatgc tgagggatgg
      961 gagactgttc agagaggtcg gccggttcgt tcccggtcta cagcagtgat gcccaaagtt
     1021 tccctagtga cagaagcctt aagggcaaag gatgacagcg ataaggaaaa catatgcctt
     1081 ttacctgaag aaagcataca gaaagggaaa cctgttgaag acagatgtgc ccctgctgaa
     1141 tcgccttcca aggactcatt acacccttct gaccatcctc tttctgagag aatacagttc
     1201 acagtgagta ttttggatga tgtcaagaat tctggtagta gtcaagacaa ttcagtgcat
     1261 acttctgaaa taccagctat tcacagtgat gtagtatgtg ttgctgttac tccacaaacc
     1321 accacagctt tgccaacaga caaagacaga gttccagcag agacagtagg aatggtgact
     1381 gagacaacgg acccttcaga tatttcaaat gtgagtgctg ctgactggtc catggcagaa
     1441 gttctcgcta aaaaggaaga gctggcagat cgtctagaaa aggccaatga ggaagccatc
     1501 gccagtgcta ttgctgaaga agaacagtta accagagaaa ttgaagctga agaaaataat
     1561 gacattaaca tcgagacgga caatgacagt gacttttctg ccagtatggg cagtgggagt
     1621 ctatctttct gtggtatgtc tctggactgg aatgatgttc tcgcagatta tgaagctcgt
     1681 gaatcatggc gtcagaatac atcctggggg gatattgtag aagaggagcc tgctagactt
     1741 ccagggcatg gaattcacat gcatgaaaaa ctttcttcac cgtctcgtaa aaggacaatt
     1801 gcagaatcta agaagaaata tgaagaaaaa cacatgaaag ctcaacaatt aagggaaaag
     1861 ctacgtgaag agaagtcact aaagcttcaa aagttgttag aaagggaaaa agatgtccga
     1921 aagtggaagg aagaattact agatcaacga cgtagaatga tggaagagaa attactccat
     1981 gctgaattta aacgagaggt acagctccaa gctattgtga agaaagctca agaggaagaa
     2041 gctaaggtaa acgagattgc cttcataaat acccttgaag ctcagaataa acgtcatgat
     2101 gttttatcaa aactgaagga atatgagcag aggcttaatg aattgcagga agagcgtcag
     2161 agaagacaag aagaaaagca agctcgtgat gaggctgtgc aggaacgtaa gagagccttg
     2221 gaggcagaac ggcaggcccg tgtagaggag ttattgacga agaggaaaga gcaagaagcc
     2281 cggattgagc aacagaggca agagaaggag aaagcccgtg aagacgcggc ccgggagaga
     2341 gctagagaca gggaagaacg gttggcagca ctcacagcag cgcagcaaga agctatggaa
     2401 gagctgcaga aaaaaatcca gctcaagcat gatgaaagca ttcgaaggca catggaacag
     2461 attgagcaaa ggaaagaaaa agctgccgag ctaagcagtg ggcggcatgc aagcactgat
     2521 tatgccccta aactgacccc ttatgaaaga aagaagcagt gttctctctg caatgtcctg
     2581 atcgcttctg aagtatatct ctttagccac attaaaggga aaaaacatca gcaagctgtg
     2641 agagagaata gcagtatcca ggggcgtgaa ctttcagatg aagaagtgga acatctgtct
     2701 ttgaagaagt atgttgttga cattgtgatt gaaagtgcag ctccaccaga gcctatgaaa
     2761 gatggagaag aacggcaaaa gaataagaaa aaagctaaaa agataaaagc acgcatgaac
     2821 accagggcta aagaatatga gaattcagta gaaaccaaaa attctggctc tgagtcacct
     2881 tataaagcaa agcttcagag attagccaaa gatcttgtaa aacaacttca agtacaagac
     2941 agtggctctt gggtaaataa taaggcttca gctttggatc ggaccctcgg cgagattgct
     3001 agaatattag agaaagagaa tgtggcagat caaattgcat ttcaagttgc tggtggatta
     3061 acagcccttg aaaacatcct tcaagtagtg gccccagcca caaacatgaa cacagtttca
     3121 cgaattcctc ctaagtctct ctgcaatgca atcaatgttt acaacctcac ctgcagtaac
     3181 tgttcagaaa actgcactga tgttctgttt agtaacaaga ttaccttctt aatggatctc
     3241 ctaatacacc aattgacggt ttatattcca gatgaaaata atgctgtttt gggaagaaat
     3301 acaaataaac aagtttttga aggcttgaca actggacttc tcagagccgg tgctgtggtt
     3361 tttagctgtc tgattgccaa ccgaccagat ggaaacagcc ggccagctac accaaaaata
     3421 tcaacacagg aaatgaaaaa caaaccctca caaggtgatg cttttaacag tcgagtgcaa
     3481 gaccttatca gctatgtggt gaacatgggt ctgattgaca gacttcgtgg ctgcttcctc
     3541 tcagtgcaag gcccagtgga tgagaatccc aaaatggcca catttctgca gcatgccgca
     3601 ggattcctac gtgggatatg tatgctgtgc tttactgtca ctggaaggtc ttctagcata
     3661 tttgacagta atcaccagga tcccacaggg ctgacagctg ctcttcaagc tacagacttg
     3721 gctggagttc tacacatgct ctactgtatc ctcttccacg gcaccatctc agacgccagc
     3781 actagtccca aggagagtta cacccagaac accatccaag tagccattca gagtttacgt
     3841 ttcttcaaca gctttgcagt tcttgacttg tctgcttttc agtctattgt aggggcagag
     3901 ggcttgtccc tggcattccg gcacatggct agttccttgc tgggccactg cagccaagtg
     3961 tcctgtgaaa gcctcctcca tgaggtcatc gtctgtgtgg gctacttcac tgtcaaccac
     4021 ccagataacc aggtaattgt acagtccggc cgccacccca cggtgctgca gaagctctgc
     4081 cagctgcctt tccagtattt cagtgaccca aggctcatca aagtgctgtt cccttcactt
     4141 atcgctgcgt gtcataacaa ccatcagaac aagctcattc tggagcaaga gatgagctgt
     4201 gttttactgg ccacattcat tcaggacttt gcacagactc cgggtcatgt ggataaccag
     4261 tcttcgaatc ccaaagggaa atgcggaaac cctggggact acctggagct ggctaacaga
     4321 tttcctcagc aggcctggga agaagcccgg caatttttct tgaaaaaaga aaaaaaataa
     4381 tttttttttt ttagccaatt ctgtatttga gtacctttgt tagtgctttc tgtgttcctt
     4441 tgggaacttg tggtctgtcc atcctcttcc ctccgctgta gatgtgctcc tcttggcagt
     4501 gtttatagag actgtacaga ccgggctgtc ctcctaactt tgcagattga gttcgtctca
     4561 tttatgcact tattttggcg tttgtctact tccactctgt gtaagttgca attgtaatat
     4621 gagtaagatt agacaaatat cattcttgta atgaagtaac acagttttca gtgttgactt
     4681 ttcacattaa agcagtacga atttgagaaa gtgttaagac tttataagcc ctgcactaag
     4741 tttttcttct aaaacttgga gttgagacct gtgtaggtaa tattttcagt aagccttggg
     4801 actgtttgaa attacagcac ctaatcacgc gttgggaact tcattggcag atagcactgt
     4861 gaactattag tgtttctgag ttaaatttag cctctaaaat tatttaaaaa aaaaaagagg
     4921 gggcatcaag tatgttttta aataatttac ttgaaacaac atggagtaaa agaaacaatg
     4981 agagtggcca tatctctgaa tacacgcagc ggtgccatgc tgtgccgcag ggggccctct
     5041 taacccaccc agtgtggagc ctgagtgaca ttggttgcag ttaccagcaa agatctagct
     5101 gtggaaaatt gaccccaaaa cctgaagatt gtcacaggaa actgaacaac acagttttgc
     5161 ctttcttaca gaaaagcaaa cttacctaac attccccaca cttccttttt gaacctcatg
     5221 gcgctacagt ttttttatgt tcaatgtatt ttactgtttt acaaatcgaa agaaaataaa
     5281 gaggtctgat gtaagccatg
//
