LOCUS       XM_039082383            5419 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus S-phase cyclin A-associated protein in
            the ER (Scaper), transcript variant X1, mRNA.
ACCESSION   XM_039082383
VERSION     XM_039082383.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082383.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5419
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5419
                     /gene="Scaper"
                     /note="S-phase cyclin A-associated protein in the ER;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 37 ESTs, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 34 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:117521"
                     /db_xref="RGD:621585"
     CDS             273..4499
                     /gene="Scaper"
                     /codon_start=1
                     /product="S phase cyclin A-associated protein in the
                     endoplasmic reticulum isoform X1"
                     /protein_id="XP_038938311.1"
                     /db_xref="GeneID:117521"
                     /db_xref="RGD:621585"
                     /translation="MMASFQRSNSHDKVRRIVAEEGRTARNLIAWSVPLESKDDDGKP
                     KCQTGGKSKRTIQGTHKTTKQFHLFHQNTSVECKITSTTGEKHFDKSPTKTRHPRKID
                     LRARYWAFLFDNLRRAVDEIYVTCESDQSVVECKEVLMMLDYYVRDFKALIDWIQLQE
                     KLEKTDAQSRPTSLAWEVKKMSPGRHVIQSPSADRMNVTSTARRSLNFGNLPGAVTAP
                     CLAPTGVSWADKVKAHHTGSSTSEVTAAQPCAPMAVQKTSRKNERKDAEGWETVQRGR
                     PVRSRSTAVMPKVSLVTEALRAKDDSDKENICLLPEESIQKGKPVEDRCAPAESPSKD
                     SLHPSDHPLSERIQFTVSILDDVKNSGSSQDNSVHTSEIPAIHSDVVCVAVTPQTTTA
                     LPTDKDRVPAETVGMVTETTDPSDISNVSAADWSMAEVLAKKEELADRLEKANEEAIA
                     SAIAEEEQLTREIEAEENNDINIETDNDSDFSASMGSGSLSFCGMSLDWNDVLADYEA
                     RESWRQNTSWGDIVEEEPARLPGHGIHMHEKLSSPSRKRTIAESKKKYEEKHMKAQQL
                     REKLREEKSLKLQKLLEREKDVRKWKEELLDQRRRMMEEKLLHAEFKREVQLQAIVKK
                     AQEEEAKVNEIAFINTLEAQNKRHDVLSKLKEYEQRLNELQEERQRRQEEKQARDEAV
                     QERKRALEAERQARVEELLTKRKEQEARIEQQRQEKEKAREDAARERARDREERLAAL
                     TAAQQEAMEELQKKIQLKHDESIRRHMEQIEQRKEKAAELSSGRHASTDYAPKLTPYE
                     RKKQCSLCNVLIASEVYLFSHIKGKKHQQAVRENSSIQGRELSDEEVEHLSLKKYVVD
                     IVIESAAPPEPMKDGEERQKNKKKAKKIKARMNTRAKEYENSVETKNSGSESPYKAKL
                     QRLAKDLVKQLQVQDSGSWVNNKASALDRTLGEIARILEKENVADQIAFQVAGGLTAL
                     ENILQVVAPATNMNTVSRIPPKSLCNAINVYNLTCSNCSENCTDVLFSNKITFLMDLL
                     IHQLTVYIPDENNAVLGRNTNKQVFEGLTTGLLRAGAVVFSCLIANRPDGNSRPATPK
                     ISTQEMKNKPSQGDAFNSRVQDLISYVVNMGLIDRLRGCFLSVQGPVDENPKMATFLQ
                     HAAGFLRGICMLCFTVTGRSSSIFDSNHQDPTGLTAALQATDLAGVLHMLYCILFHGT
                     ISDASTSPKESYTQNTIQVAIQSLRFFNSFAVLDLSAFQSIVGAEGLSLAFRHMASSL
                     LGHCSQVSCESLLHEVIVCVGYFTVNHPDNQVIVQSGRHPTVLQKLCQLPFQYFSDPR
                     LIKVLFPSLIAACHNNHQNKLILEQEMSCVLLATFIQDFAQTPGHVDNQSSNPKGKCG
                     NPGDYLELANRFPQQAWEEARQFFLKKEKK"
ORIGIN      
        1 ggggcgtggc taggcttcgg ctggtatcac gtggtacgcc ggccatctgc cccgcccggt
       61 cctccgcggc cgccccgccc caccccgccc ctttcccgcc gggacgctgg gagccgcccc
      121 aaagtacgct aagccgcccg gagctgtgtt tttataccac cgtggatttt gggacattgt
      181 gattaccctg aaagataacc tgttctcatt taaggaatta taacccatgg aattgtgtgg
      241 taaataatct tgccactgga gagaattaaa gaatgatggc ttccttccag cgctccaata
      301 gtcatgacaa agtgaggaga attgttgctg aagagggtcg tacagcaaga aacctgatag
      361 cttggagtgt tccactagaa agcaaagatg atgatggaaa acctaaatgt caaactggtg
      421 gaaaatctaa gaggacaatt caaggcactc ataaaaccac taaacagttt catttatttc
      481 atcagaatac ttcagtagaa tgtaaaataa catccacaac tggagagaaa cattttgata
      541 aaagtccgac aaaaacaagg cacccacgga aaattgacct aagagctcgc tattgggcat
      601 ttctttttga caatcttcgc cgggcagtag atgaaatcta tgtgacttgt gaatcagatc
      661 agagtgtggt agaatgtaag gaggtgctaa tgatgctgga ttactatgtg agagatttta
      721 aagcattgat tgactggatt caacttcagg aaaagttaga gaagacagat gctcaaagca
      781 gaccaacctc actggcgtgg gaagtaaaga agatgtctcc aggacgtcat gtgatccaaa
      841 gcccatcagc agatagaatg aatgtaacat caactgcaag aagaagctta aactttggga
      901 atttacctgg tgcagtaact gccccatgtc tggctcccac aggtgtcagt tgggctgaca
      961 aggtaaaggc gcatcacact ggttcttcca cttctgaggt aacagctgct cagccctgtg
     1021 caccaatggc agtgcagaaa acttcccgga aaaatgaacg gaaagatgct gagggatggg
     1081 agactgttca gagaggtcgg ccggttcgtt cccggtctac agcagtgatg cccaaagttt
     1141 ccctagtgac agaagcctta agggcaaagg atgacagcga taaggaaaac atatgccttt
     1201 tacctgaaga aagcatacag aaagggaaac ctgttgaaga cagatgtgcc cctgctgaat
     1261 cgccttccaa ggactcatta cacccttctg accatcctct ttctgagaga atacagttca
     1321 cagtgagtat tttggatgat gtcaagaatt ctggtagtag tcaagacaat tcagtgcata
     1381 cttctgaaat accagctatt cacagtgatg tagtatgtgt tgctgttact ccacaaacca
     1441 ccacagcttt gccaacagac aaagacagag ttccagcaga gacagtagga atggtgactg
     1501 agacaacgga cccttcagat atttcaaatg tgagtgctgc tgactggtcc atggcagaag
     1561 ttctcgctaa aaaggaagag ctggcagatc gtctagaaaa ggccaatgag gaagccatcg
     1621 ccagtgctat tgctgaagaa gaacagttaa ccagagaaat tgaagctgaa gaaaataatg
     1681 acattaacat cgagacggac aatgacagtg acttttctgc cagtatgggc agtgggagtc
     1741 tatctttctg tggtatgtct ctggactgga atgatgttct cgcagattat gaagctcgtg
     1801 aatcatggcg tcagaataca tcctgggggg atattgtaga agaggagcct gctagacttc
     1861 cagggcatgg aattcacatg catgaaaaac tttcttcacc gtctcgtaaa aggacaattg
     1921 cagaatctaa gaagaaatat gaagaaaaac acatgaaagc tcaacaatta agggaaaagc
     1981 tacgtgaaga gaagtcacta aagcttcaaa agttgttaga aagggaaaaa gatgtccgaa
     2041 agtggaagga agaattacta gatcaacgac gtagaatgat ggaagagaaa ttactccatg
     2101 ctgaatttaa acgagaggta cagctccaag ctattgtgaa gaaagctcaa gaggaagaag
     2161 ctaaggtaaa cgagattgcc ttcataaata cccttgaagc tcagaataaa cgtcatgatg
     2221 ttttatcaaa actgaaggaa tatgagcaga ggcttaatga attgcaggaa gagcgtcaga
     2281 gaagacaaga agaaaagcaa gctcgtgatg aggctgtgca ggaacgtaag agagccttgg
     2341 aggcagaacg gcaggcccgt gtagaggagt tattgacgaa gaggaaagag caagaagccc
     2401 ggattgagca acagaggcaa gagaaggaga aagcccgtga agacgcggcc cgggagagag
     2461 ctagagacag ggaagaacgg ttggcagcac tcacagcagc gcagcaagaa gctatggaag
     2521 agctgcagaa aaaaatccag ctcaagcatg atgaaagcat tcgaaggcac atggaacaga
     2581 ttgagcaaag gaaagaaaaa gctgccgagc taagcagtgg gcggcatgca agcactgatt
     2641 atgcccctaa actgacccct tatgaaagaa agaagcagtg ttctctctgc aatgtcctga
     2701 tcgcttctga agtatatctc tttagccaca ttaaagggaa aaaacatcag caagctgtga
     2761 gagagaatag cagtatccag gggcgtgaac tttcagatga agaagtggaa catctgtctt
     2821 tgaagaagta tgttgttgac attgtgattg aaagtgcagc tccaccagag cctatgaaag
     2881 atggagaaga acggcaaaag aataagaaaa aagctaaaaa gataaaagca cgcatgaaca
     2941 ccagggctaa agaatatgag aattcagtag aaaccaaaaa ttctggctct gagtcacctt
     3001 ataaagcaaa gcttcagaga ttagccaaag atcttgtaaa acaacttcaa gtacaagaca
     3061 gtggctcttg ggtaaataat aaggcttcag ctttggatcg gaccctcggc gagattgcta
     3121 gaatattaga gaaagagaat gtggcagatc aaattgcatt tcaagttgct ggtggattaa
     3181 cagcccttga aaacatcctt caagtagtgg ccccagccac aaacatgaac acagtttcac
     3241 gaattcctcc taagtctctc tgcaatgcaa tcaatgttta caacctcacc tgcagtaact
     3301 gttcagaaaa ctgcactgat gttctgttta gtaacaagat taccttctta atggatctcc
     3361 taatacacca attgacggtt tatattccag atgaaaataa tgctgttttg ggaagaaata
     3421 caaataaaca agtttttgaa ggcttgacaa ctggacttct cagagccggt gctgtggttt
     3481 ttagctgtct gattgccaac cgaccagatg gaaacagccg gccagctaca ccaaaaatat
     3541 caacacagga aatgaaaaac aaaccctcac aaggtgatgc ttttaacagt cgagtgcaag
     3601 accttatcag ctatgtggtg aacatgggtc tgattgacag acttcgtggc tgcttcctct
     3661 cagtgcaagg cccagtggat gagaatccca aaatggccac atttctgcag catgccgcag
     3721 gattcctacg tgggatatgt atgctgtgct ttactgtcac tggaaggtct tctagcatat
     3781 ttgacagtaa tcaccaggat cccacagggc tgacagctgc tcttcaagct acagacttgg
     3841 ctggagttct acacatgctc tactgtatcc tcttccacgg caccatctca gacgccagca
     3901 ctagtcccaa ggagagttac acccagaaca ccatccaagt agccattcag agtttacgtt
     3961 tcttcaacag ctttgcagtt cttgacttgt ctgcttttca gtctattgta ggggcagagg
     4021 gcttgtccct ggcattccgg cacatggcta gttccttgct gggccactgc agccaagtgt
     4081 cctgtgaaag cctcctccat gaggtcatcg tctgtgtggg ctacttcact gtcaaccacc
     4141 cagataacca ggtaattgta cagtccggcc gccaccccac ggtgctgcag aagctctgcc
     4201 agctgccttt ccagtatttc agtgacccaa ggctcatcaa agtgctgttc ccttcactta
     4261 tcgctgcgtg tcataacaac catcagaaca agctcattct ggagcaagag atgagctgtg
     4321 ttttactggc cacattcatt caggactttg cacagactcc gggtcatgtg gataaccagt
     4381 cttcgaatcc caaagggaaa tgcggaaacc ctggggacta cctggagctg gctaacagat
     4441 ttcctcagca ggcctgggaa gaagcccggc aatttttctt gaaaaaagaa aaaaaataat
     4501 tttttttttt tagccaattc tgtatttgag tacctttgtt agtgctttct gtgttccttt
     4561 gggaacttgt ggtctgtcca tcctcttccc tccgctgtag atgtgctcct cttggcagtg
     4621 tttatagaga ctgtacagac cgggctgtcc tcctaacttt gcagattgag ttcgtctcat
     4681 ttatgcactt attttggcgt ttgtctactt ccactctgtg taagttgcaa ttgtaatatg
     4741 agtaagatta gacaaatatc attcttgtaa tgaagtaaca cagttttcag tgttgacttt
     4801 tcacattaaa gcagtacgaa tttgagaaag tgttaagact ttataagccc tgcactaagt
     4861 ttttcttcta aaacttggag ttgagacctg tgtaggtaat attttcagta agccttggga
     4921 ctgtttgaaa ttacagcacc taatcacgcg ttgggaactt cattggcaga tagcactgtg
     4981 aactattagt gtttctgagt taaatttagc ctctaaaatt atttaaaaaa aaaaagaggg
     5041 ggcatcaagt atgtttttaa ataatttact tgaaacaaca tggagtaaaa gaaacaatga
     5101 gagtggccat atctctgaat acacgcagcg gtgccatgct gtgccgcagg gggccctctt
     5161 aacccaccca gtgtggagcc tgagtgacat tggttgcagt taccagcaaa gatctagctg
     5221 tggaaaattg accccaaaac ctgaagattg tcacaggaaa ctgaacaaca cagttttgcc
     5281 tttcttacag aaaagcaaac ttacctaaca ttccccacac ttcctttttg aacctcatgg
     5341 cgctacagtt tttttatgtt caatgtattt tactgtttta caaatcgaaa gaaaataaag
     5401 aggtctgatg taagccatg
//
