LOCUS       NM_031724               1497 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus secretory carrier membrane protein 3 (Scamp3),
            mRNA.
ACCESSION   NM_031724 XM_001074344 XM_342279
VERSION     NM_031724.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1497)
  AUTHORS   Smith CJ, Berry DM and McGlade CJ.
  TITLE     The E3 ubiquitin ligases RNF126 and Rabring7 regulate endosomal
            sorting of the epidermal growth factor receptor
  JOURNAL   J Cell Sci 126 (Pt 6), 1366-1380 (2013)
   PUBMED   23418353
REFERENCE   2  (bases 1 to 1497)
  AUTHORS   Buschow SI, van Balkom BW, Aalberts M, Heck AJ, Wauben M and
            Stoorvogel W.
  TITLE     MHC class II-associated proteins in B-cell exosomes and potential
            functional implications for exosome biogenesis
  JOURNAL   Immunol Cell Biol 88 (8), 851-856 (2010)
   PUBMED   20458337
REFERENCE   3  (bases 1 to 1497)
  AUTHORS   Kunarso G, Wong KY, Stanton LW and Lipovich L.
  TITLE     Detailed characterization of the mouse embryonic stem cell
            transcriptome reveals novel genes and intergenic splicing
            associated with pluripotency
  JOURNAL   BMC Genomics 9, 155 (2008)
   PUBMED   18400104
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1497)
  AUTHORS   Liao H, Zhang J, Shestopal S, Szabo G, Castle A and Castle D.
  TITLE     Nonredundant function of secretory carrier membrane protein
            isoforms in dense core vesicle exocytosis
  JOURNAL   Am J Physiol Cell Physiol 294 (3), C797-C809 (2008)
   PUBMED   18171723
  REMARK    GeneRIF: SCAMP isoforms regulate membrane fusion and dense core
            vesicle exocytosis in neurons.
REFERENCE   5  (bases 1 to 1497)
  AUTHORS   Bell AW, Ward MA, Blackstock WP, Freeman HN, Choudhary JS, Lewis
            AP, Chotai D, Fazel A, Gushue JN, Paiement J, Palcy S, Chevet E,
            Lafreniere-Roula M, Solari R, Thomas DY, Rowley A and Bergeron JJ.
  TITLE     Proteomics characterization of abundant Golgi membrane proteins
  JOURNAL   J Biol Chem 276 (7), 5152-5165 (2001)
   PUBMED   11042173
REFERENCE   6  (bases 1 to 1497)
  AUTHORS   Fernandez-Chacon R and Sudhof TC.
  TITLE     Novel SCAMPs lacking NPF repeats: ubiquitous and synaptic
            vesicle-specific forms implicate SCAMPs in multiple
            membrane-trafficking functions
  JOURNAL   J Neurosci 20 (21), 7941-7950 (2000)
   PUBMED   11050114
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CK599635.1, DV726194.1 and BQ783359.1.
            
            On or before Dec 13, 2009 this sequence version replaced
            XM_001074344.1, XM_342279.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-665               CK599635.1         1-665
            666-1277            DV726194.1         207-818
            1278-1497           BQ783359.1         1-220               c
FEATURES             Location/Qualifiers
     source          1..1497
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..1497
                     /gene="Scamp3"
                     /note="secretory carrier membrane protein 3"
                     /db_xref="GeneID:65169"
                     /db_xref="RGD:68351"
     exon            1..175
                     /gene="Scamp3"
                     /inference="alignment:Splign:2.1.0"
     CDS             110..1162
                     /gene="Scamp3"
                     /codon_start=1
                     /product="secretory carrier-associated membrane protein 3"
                     /protein_id="NP_113912.1"
                     /db_xref="GeneID:65169"
                     /db_xref="RGD:68351"
                     /translation="MAQNRDGGNPFPDSGELDNPFQDPAVIQHRPSQQYATLDVYNPF
                     ENREQPPPAYEPPAPAPAPLPPPSAPSVQSSRKLSPAEPKNYGSYSTQATAAAATAEL
                     LKKQEELNRKAEELDRRERELQHVALGGAGTRQNNWPPLPSFCPVQPCFFQDISMEIP
                     QEFQKTVSTMYYLWMCSTLALLLNFFACLARFCVDTGSGSGFGLSMLWLLLFTPCSFV
                     CWYRPMYKAFRSDSSFNFFVFFFIFFVQDVFFVLQAIGIPGWGFSGWVSALVVVGSNP
                     AVAVLMLLVALLFTGIAVLGIVMLKRIHSLYRQTGASFQKAQQEFAAGVFSNPAVRTA
                     AANAAAGAAENAFRAP"
     exon            176..253
                     /gene="Scamp3"
                     /inference="alignment:Splign:2.1.0"
     exon            254..385
                     /gene="Scamp3"
                     /inference="alignment:Splign:2.1.0"
     exon            386..506
                     /gene="Scamp3"
                     /inference="alignment:Splign:2.1.0"
     exon            507..635
                     /gene="Scamp3"
                     /inference="alignment:Splign:2.1.0"
     exon            636..795
                     /gene="Scamp3"
                     /inference="alignment:Splign:2.1.0"
     exon            796..897
                     /gene="Scamp3"
                     /inference="alignment:Splign:2.1.0"
     exon            898..1015
                     /gene="Scamp3"
                     /inference="alignment:Splign:2.1.0"
     exon            1016..1481
                     /gene="Scamp3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agggaagcga gtggaccaag cacaccggag ggagttcttt gggccaccac cgccgtactg
       61 ccgcggcagg ggcgtggagg gcaggggagg cccgggctcg cttgcaaaca tggctcagaa
      121 cagagacggc gggaatccat tccctgactc cggcgagctt gacaatccct ttcaggaccc
      181 agctgtgatc cagcaccgac ccagccagca gtatgccacg cttgacgtct acaacccctt
      241 tgagaaccga gagcagcccc caccagccta tgagcctcct gccccagccc cagcccctct
      301 gccgccaccc tcagctcctt ctgtacagtc ctcaagaaag ctcagccccg cagagcccaa
      361 gaactacggc tcctacagca ctcaggctac agctgcagca gccaccgctg agctgctgaa
      421 gaagcaggag gagctcaacc ggaaggcaga ggagttggac cgcagggagc gagagctgca
      481 gcatgttgcc ctgggtggtg caggcactcg acagaacaac tggcctcccc tgccgtcttt
      541 ttgccctgtg cagccttgct ttttccaaga catctctatg gagatccccc aagaatttca
      601 gaagacagtg tctaccatgt actacctctg gatgtgcagc actctggctc ttctcctgaa
      661 cttcttcgcc tgcctggcca ggttctgtgt ggacaccggc agtgggtcag gctttgggct
      721 gtctatgctc tggctgctcc tttttactcc ctgctccttt gtctgctggt accgcccgat
      781 gtataaggct ttccggagtg atagttcatt caatttcttc gtttttttct tcattttctt
      841 cgtccaggat gtgttctttg tcctccaggc cattggtatc ccaggttggg gcttcagtgg
      901 ctgggtgtcc gctctcgtgg tggtggggtc caacccagcc gtggcggtgc tcatgctgct
      961 cgtcgccctg ctcttcactg gcattgccgt gctgggaatt gtgatgctga agcggatcca
     1021 ctccttatac cgccaaacag gtgccagctt tcagaaggcc cagcaagaat ttgctgctgg
     1081 tgtcttctcc aaccctgcag ttcgaactgc cgccgccaat gcagctgcag gggctgctga
     1141 aaatgccttc agggccccat gacccctact gcaccgggtg ggatgccctg gccctgccac
     1201 ctgtgggagc caagatagcc cctatccctg cagtctctgg gattcaggga gccgtcacca
     1261 cttggtgact tctaataggg ctcttaattc cacagccatg actctaagcc tgactggagg
     1321 tgtggagagc ccactgtgac tcagtcatta tttgccttta tctcccatct ggccacactg
     1381 cagccacctc tcacataacc ccaaaccctg tttccctctg ctgtgccaag gatgtcttct
     1441 tccgttattt aaattaaaaa agaaaaaaag tataactgga aaaaaaaaaa aaaaaaa
//
