LOCUS       NM_001309360            1205 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus spermine binding protein (Sbp), transcript
            variant 2, mRNA.
ACCESSION   NM_001309360 XM_008767547
VERSION     NM_001309360.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1205)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1205)
  AUTHORS   Anderegg,R.J., Carr,S.A., Huang,I.Y., Hiipakka,R.A., Chang,C.S. and
            Liao,S.T.
  TITLE     Correction of the cDNA-derived protein sequence of prostatic
            spermine binding protein: pivotal role of tandem mass spectrometry
            in sequence analysis
  JOURNAL   Biochemistry 27 (12), 4214-4221 (1988)
   PUBMED   3166977
REFERENCE   3  (bases 1 to 1205)
  AUTHORS   Chang,C.S., Saltzman,A.G., Hiipakka,R.A., Huang,I.Y. and Liao,S.S.
  TITLE     Prostatic spermine-binding protein. Cloning and nucleotide sequence
            of cDNA, amino acid sequence, and androgenic control of mRNA level
  JOURNAL   J Biol Chem 262 (6), 2826-2831 (1987)
   PUBMED   3818623
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On May 29, 2015 this sequence version replaced XM_008767547.1.
            
            Transcript Variant: This variant (2) contains an alternate exon in
            the 5' UTR, lacks a portion of the 5' coding region, and initiates
            translation at an alternate start codon, compared to variant 1. The
            encoded isoform (2) has a distinct N-terminus and is longer than
            isoform 1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: J02675.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-239               JAXUCZ010000010.1  13450613-13450851
            240-365             JAXUCZ010000010.1  13469777-13469902
            366-1205            JAXUCZ010000010.1  13472177-13473016
FEATURES             Location/Qualifiers
     source          1..1205
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..1205
                     /gene="Sbp"
                     /gene_synonym="Zg16b"
                     /note="spermine binding protein"
                     /db_xref="GeneID:25540"
                     /db_xref="RGD:3623"
     exon            1..239
                     /gene="Sbp"
                     /gene_synonym="Zg16b"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..1044
                     /gene="Sbp"
                     /gene_synonym="Zg16b"
                     /note="isoform 2 is encoded by transcript variant 2;
                     prostatic spermine-binding protein; zymogen granule
                     protein 16B"
                     /codon_start=1
                     /product="prostatic spermine-binding protein isoform 2"
                     /protein_id="NP_001296289.1"
                     /db_xref="GeneID:25540"
                     /db_xref="RGD:3623"
                     /translation="MVQVFWSYLWRVSAPQMTPSSAEGGRKMEAGGCVCGKHNVERYS
                     DWDSLSLLAPKAILTVSVCLLWRASQKSHHLPAASKCQIVPHTLRSHAAVGDPGSPCR
                     SHLQSPDIQLRFGGNWSDVYGSRSLKYKEFLLEDGEHVTQVSGTRKLCLTSLSFTTNK
                     GRVVTFGVRRGLSFNESGGSDKYLVTVNGLYAPGLCLNGMGFKWKNIHDDFDDNDDDK
                     EDDDDEHDDDNEEDHGDKDNDKDHDDDHDDDDDDKEDDNEEDVDDERDDKDDDEEEDD
                     NDKENDKDDGEGSGDDDDNDDEDDDKDDDGGSGNDDDDGDDDEDDDGGDDDNGDEEEE
                     "
     exon            240..365
                     /gene="Sbp"
                     /gene_synonym="Zg16b"
                     /inference="alignment:Splign:2.1.0"
     exon            366..1205
                     /gene="Sbp"
                     /gene_synonym="Zg16b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcggacaag cccttccctt aagaaccctg gtaagagtga tggtccaagt tttctggtca
       61 tatttatgga gagtctcggc accccaaatg acaccctcta gtgctgaagg tggaagaaaa
      121 atggaagctg gtggctgtgt ctgtggaaaa cacaatgtgg agcggtatag tgactgggac
      181 agcttgtcgc tcctggcacc caaggcaatt ctgactgtat ctgtctgtct gctctggaga
      241 gcctcgcaaa aatctcacca cctccctgca gcttctaagt gccagattgt gccccacacc
      301 ctcaggagcc atgctgctgt tggtgaccct ggctctcctt gccggtccca cctgcagagc
      361 ccagacatcc agctgcggtt tggtggtaac tggagtgacg tgtacggatc ccggtcacta
      421 aaatataaag agttccttct ggaggatgga gagcacgtga cacaggtgag cggcaccaga
      481 aagctctgcc tgacttccct aagcttcact actaacaagg ggcgagtggt cacctttggt
      541 gttagacgtg gcttgtcctt taatgaaagt ggaggttcag ataagtatct agtgactgtc
      601 aatggtctgt atgcaccggg cctctgcctt aatgggatgg gcttcaaatg gaaaaatatt
      661 catgatgact ttgacgacaa tgatgatgac aaggaagatg atgatgatga acatgatgat
      721 gacaatgagg aagaccatgg tgataaagac aatgacaaag atcatgatga tgaccatgat
      781 gatgatgatg atgacaagga agatgacaac gaggaagatg ttgatgatga aagagatgac
      841 aaagatgatg atgaggagga agatgataat gataaggaaa atgacaaaga cgatggtgag
      901 ggcagtgggg atgatgatga caatgatgat gaagatgatg acaaagatga tgatggtggt
      961 agtggtaatg atgatgatga tggtgatgat gatgaggatg atgatggtgg tgatgatgac
     1021 aatggtgatg aggaagaaga gtagcatgtt cagagctcag ccctgcatcc ccgcattcca
     1081 ccacctcctc tcagccaagc ttacccactc acagggacca atagaccagg tgaccctggg
     1141 ctggagtagg caaagtccaa atgcccttta tctctctgtc caataaagta tgtgcatcta
     1201 tgtga
//
