LOCUS       XM_039078982            5514 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus strawberry notch homolog 2 (Sbno2),
            transcript variant X5, mRNA.
ACCESSION   XM_039078982
VERSION     XM_039078982.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5514
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5514
                     /gene="Sbno2"
                     /gene_synonym="RGD1307194; Stno"
                     /note="strawberry notch homolog 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 18
                     ESTs, 1 long SRA read, 8 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 142 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:314619"
                     /db_xref="RGD:1307194"
     CDS             1263..5096
                     /gene="Sbno2"
                     /gene_synonym="RGD1307194; Stno"
                     /codon_start=1
                     /product="protein strawberry notch homolog 2 isoform X4"
                     /protein_id="XP_038934910.1"
                     /db_xref="GeneID:314619"
                     /db_xref="RGD:1307194"
                     /translation="MSQLRFWLQFAALNKDPSCLEDLSNASVFSSSVDSLSDIPDTPD
                     FLPADSLNEVPTIWDVSTTSTTRDKLFLPSVPFSALEDPVTAVSSTPLLVSYQSHSQP
                     EEEEGEDEEEAEELGHAETYADYVPSKSKIGKQHPDRVVETSTLSSVPPPDITYTLAL
                     PTSDNGTLSALQLEAITYACQQHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIVENYL
                     RGRKKALWFSASNDLKYDAERDLRDIEAPGIAVHALSKIKYGDNTTSEGVLFATYSAL
                     IGESQAGGQHRTRLRQILQWCGEAFDGVIVFDECHKAKNASSTKMGKAVLDLQNKLPQ
                     ARVVYASATGASEPRNMIYMSRLGIWGEGTPFRTFEEFLHAIEKRGVGAMEIVAMDMK
                     VSGMYIARQLSFSGVTFRIEEIPLSPVFEQVYNRAARLWAEALSVFQQAADWIGLESR
                     KSLWGQFWSAHQRFFKYLCIAAKVHRLVELAQQELSRDKCVVIGLQSTGEARTREVLD
                     ENEGRLDCFVSAAEGVFLSLIQKHFPSTRRRRDRGGGKRKRRPRGRGPKASRLTLEAA
                     GVIRISDGSSTESDAGLDSDFNSSPESLVDDDVVIVDAPTLPTDDRGPLYPLQRDLQG
                     PGVLERVERLKQGLLAKVRALGRELPVNTLDQLIHQLGGPECVAEMTGRKGRVVSRPD
                     GSVVFESRAEQGLSIDHVNLREKQRFMSGEKLVAIISEASSSGVSLQADRRVQNQRRR
                     VHMTLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRFASIVAKRLESLGA
                     LTHGDRRATESRDLSKYNFENKYGARALSRVLATIMGQTNNRVPLPQGYPGGDAAFFR
                     DMKQGLLSVGIGSRESRSGCLDVEKDCSITKFLNRILGLEVHKQNALFQYFSDTFDHL
                     IEIDKKEGRYDMGILDLAPGINEIHEESQQVFLAPGHPQDGQVVFYKISVDRGMKWEE
                     AFTRSLELKGPYDGFYLSYKVRGSKTSCLLAEQNRGDYFTVYKPNIGRQSQLETLDNL
                     CRKFHRVTPEEAREPWESSYALSLEHCSHTTWNQRCRLAQEGKCCAQGLRLRHHYMLC
                     GALLRVWGRIAAVMADVSSSSYLQIVRLKTKDKKKQVGIKIPEGCVHRVLQELQLMDA
                     EVKRRSAHGLAARPPTPRAITLPCGPGEVLDLTYSPPAEPFPAPPRFAFPSLPPPDPS
                     SLMLGTRDNATNPVELAHQGCDINFREVLEDMLRSLRAGPTETPAPLVGVGGGGGGGT
                     ERQSVIHFSPPFPNS"
ORIGIN      
        1 agatcccatt acagatggtt gtgagccacc atgtggttgc tgggaattga actcaggacc
       61 tctggaagag cagtcagtgc ccttaaccgc tgagccacct ctccagaact cctgctctga
      121 gttttgattt gagtttattg agatagggtt ttgcagtgta gcccaggctg ttctcacagt
      181 cctcctgcct cagactgtca agggctgtgt caacaaggat gcaccacaat gagtggcttc
      241 gctgtgctga ttggaattga ggctttgctc agtgcctgtg cctggatagg gacaggatgt
      301 tgccagggtg aatgagggca gttccagctg ctgtttctgg ggcctttgtc ctgggtggct
      361 gaggatgtga gagcctagta gaaccctgca gcgctgctgt cctgacagga tggccgggga
      421 tcttcattga tggatgggat cctgctggct tgggctcctc agcctcctgc ccatgagtac
      481 tgatatagga tggccttctt tgtgggacac ctcatcccca acaggagagg ccatgtcccc
      541 agagacagcc acaactgtgg ccctgtgctg catccctgcc tgcctatagt ggaagtgtct
      601 tctcctatgt cttgtggccc taggctctcc ccagcagctc aacttattgg aggataccag
      661 gggtgagcgg tgggccctgg tgtgaggact ctggaggatg cactttgatg aaggactggc
      721 ggcccagctc agctggaggg aggagtagaa gggtacccag gcctcagttc ccctggccca
      781 gcttctcagt tttgcctgca gcccctgatc cctgacttcc ctggggtggg gtggggggag
      841 tagggggctg gtgcacagaa cagcccgtgc gtcagtagtc ccagggaaac tgaagctttc
      901 tcttcttccc catgggatgg cccagagaag tggggtcagg ccaggctctg agcccggcag
      961 ggtgcgcgtt gttgacagcc cttctgggct gatccgcccc ctacagtaat tctccgtgct
     1021 ctgccagtaa ctgccctgac ttaccaggcg gcatcatttc ctgaaaccca gcccagcctt
     1081 aggggaagtc gggagggagc cggtgactaa ccctcatgca aatggggcca gcaagattgc
     1141 tgctgcctct gtcccccacg gagccgctaa gcctgcggct accgtggtca tgaggctggt
     1201 gctccccggc agctctaact gggggacacg gcggccaccg ctcagcgccc cgcaccccga
     1261 ccatgtcaca gctgcgcttc tggctgcagt tcgccgcgct caacaaggat ccttcatgcc
     1321 tcgaggacct ctccaatgcc tctgtcttct cctcgtctgt ggattccctg tcagatatcc
     1381 cagacacacc cgacttcctg ccggccgaca gcctcaacga ggtgcctacc atctgggatg
     1441 tcagcaccac ctccaccacc cgggacaagc tgttcctacc gagtgtgcca ttctcggctc
     1501 tggaagaccc ggtgaccgca gtttccagta ccccgcttct cgtcagctat cagtcacaca
     1561 gccagcctga ggaggaggaa ggcgaagacg aggaggaggc tgaggaactg ggccatgctg
     1621 agacctatgc cgactatgta ccttccaagt ccaagattgg aaagcagcac ccagaccgtg
     1681 tagtggagac cagcacactg tccagcgttc cgcccccaga catcacctac accctggcac
     1741 tacccacctc agacaacggg accctgtctg ccctacagct ggaagccatc acctatgcct
     1801 gccagcaaca cgaggtcctg ctgcccagtg ggcagcgtgc tggtttcctg attggggatg
     1861 gggccggcgt gggcaagggc cgcacggtgg ctggcatcat agtggagaat tacctgcggg
     1921 gccggaagaa ggctttgtgg ttcagtgcct ccaatgacct caagtatgat gcagaacggg
     1981 acctgagaga catcgaggcc cccggcattg cggtgcatgc actaagcaag atcaagtacg
     2041 gtgacaacac tacctcagag ggtgtcctct ttgccaccta ctctgccctg attggagaaa
     2101 gccaggcggg tgggcagcat cgcacacgtc tacgccagat cctgcagtgg tgtggagagg
     2161 cctttgatgg tgtgattgtg tttgacgagt gtcacaaagc caagaatgcc agctccacca
     2221 agatgggcaa ggccgtgctg gacctgcaga acaagctgcc ccaggccagg gtggtgtatg
     2281 ccagcgccac aggcgcctct gagccccgca acatgatata catgagccgc ttgggcatct
     2341 ggggcgaggg cacacccttc cggaccttcg aggagttcct gcatgccatt gagaagaggg
     2401 gcgtgggtgc catggagatt gtggccatgg acatgaaggt cagtggcatg tacatcgccc
     2461 gccagctcag cttctcaggg gtcacattcc gaatcgagga gatcccactg tctcctgtct
     2521 tcgagcaggt ctataatcgg gcagcccggc tgtgggccga ggccctgagt gtgttccagc
     2581 aggcggctga ctggatcggt ctggagtctc ggaagtccct gtggggtcag ttctggtccg
     2641 cacaccagcg cttctttaaa tacctgtgca ttgcggccaa ggtgcaccgg ctggtggagc
     2701 tggcacagca ggagctgagc agggacaagt gcgtggtcat cgggctgcag tccacagggg
     2761 aggcgcggac ccgagaggtg ctagacgaga atgagggccg cctggactgc ttcgtctctg
     2821 cagcagaagg cgtcttcctg tccctgatcc agaagcactt cccttccacc aggaggaggc
     2881 gtgaccgggg aggaggaaag aggaaacggc ggcctcgggg tcgtggtccc aaggcttcca
     2941 gactgacact ggaggcagca ggagttatcc gtattagtga tggcagcagc acagagtcag
     3001 atgctggcct ggatagcgac ttcaattcat ccccagagtc cctggtagat gatgatgtgg
     3061 tcatcgtaga cgcccccacg ctccccacag atgaccgagg tcccctgtac ccacttcaga
     3121 gagacctaca gggccctggt gtcctggagc gggtggaacg gctgaaacag ggcctgctgg
     3181 caaaggtgcg agcactgggc cgggagctgc ctgtgaacac attggaccag ctcatccacc
     3241 agcttggggg cccggagtgt gtggctgaga tgactggcag gaaaggccga gtggtatcga
     3301 ggcccgacgg gtcagtggtc tttgagtcca gagcagagca gggcctgtcc atcgaccatg
     3361 tgaacctcag ggagaagcag cgtttcatga gcggcgagaa gctcgtggct attatctctg
     3421 aggcctccag ctctggtgtc tccctccaag ccgaccggcg agtccagaac cagagacgcc
     3481 gggtacacat gaccttggag ctgccttgga gcgcagaccg agccatccaa cagtttggcc
     3541 gcacccacag atccaaccag gtctcagcgc ccgagtatgt cttccttatc tccgagctgg
     3601 caggggagcg caggttcgcc tccattgtgg ccaagcggct ggagagtctg ggtgctctga
     3661 cccacggaga tcgacgggcc actgagtccc gggacctgag caagtataac ttcgagaaca
     3721 agtatggcgc ccgtgcgctc agccgtgtcc ttgccacaat catgggccag acaaacaaca
     3781 gggtgcccct gccccagggc tatccaggag gggatgctgc cttttttcgg gacatgaagc
     3841 agggcctgct gtctgtgggc atcggtagcc gggagtcacg ctctggctgc ttggatgtgg
     3901 agaaggactg ctccatcacc aagtttctga accgcatcct tgggctggag gtgcacaagc
     3961 agaacgcgct gttccagtat ttctccgaca cgtttgacca cctcatcgag atcgacaaga
     4021 aggagggcag atacgacatg ggcattctgg acctggcccc cggcatcaat gaaatacatg
     4081 aagagagcca gcaggtgttc ctggcacccg ggcacccaca ggacgggcag gtggtcttct
     4141 acaagattag cgtggaccgc ggtatgaagt gggaagaggc attcactagg tcgctggagc
     4201 taaaaggccc ctatgacggc ttctacctct cctacaaggt acgaggcagc aaaacgagct
     4261 gccttctggc agaacagaat cgaggcgatt atttcaccgt gtacaagcca aacattggcc
     4321 ggcagagcca gctggagacc ctggacaacc tgtgccggaa gttccaccgg gtcaccccgg
     4381 aagaggcgcg ggaaccctgg gagagcagct atgcgctgtc gctggagcac tgcagccaca
     4441 ctacctggaa ccagcgctgc cgactggcac aggagggcaa gtgctgtgcc cagggcctgc
     4501 gcctccgcca ccactacatg ctgtgcgggg cgctgctgcg cgtgtggggc cgcatcgctg
     4561 ctgtcatggc ggacgtcagc agtagcagct acctacagat cgtgcgcctc aagaccaagg
     4621 acaaaaagaa gcaagtgggc atcaagatcc cggagggctg cgttcaccgc gtactgcagg
     4681 aactgcagct catggatgca gaagtgaagc gccgcagcgc tcatgggttg gctgcgcgcc
     4741 cacctactcc tcgtgcgatt acacttccat gcggtcctgg tgaggtgctg gacttgacct
     4801 acagtccccc ggccgagcct ttcccagcgc ctccacgctt cgccttccct tcgttgccac
     4861 ccccagaccc cagctctctg atgctgggta ccagggacaa cgctaccaac cctgtggagc
     4921 tggcacacca gggctgcgac atcaatttca gggaagtgct ggaggacatg ctccgctctt
     4981 tgcgcgcggg gcccactgag acccctgcgc ctctggtggg cgtgggcggc ggcggaggcg
     5041 gtggcacaga gcggcagagc gttatccact tcagtccacc cttcccaaac tcttaggctg
     5101 ctacatcagc ctctggatta cactgcactg ggcagtaagg cctatgggct cctctgctag
     5161 caggggttcc catgactact gagggtgact ggccacggtg ccttcccaac cagtagggcg
     5221 tggggcccct gtgcctcccc tgctacagcc atgcccagcc tagaagccgt ggggcttggt
     5281 tgtcccagag agctggtaac tcaggaaatc ggtgctcggg ccccgctggc tatgggggct
     5341 ccacggggta gaccccgtta atatatgcaa tcccctgccc cctaaattat tgtcacctgc
     5401 ccctccccag ccccggaatc tgtgggcagc cggcaggccc tggtttctat gtatttataa
     5461 cgaactgtgt acatatgtaa agaccttttc taaaatatac atgcctttgc ctac
//
