LOCUS       NM_001389247            6053 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus strawberry notch homolog 1 (Sbno1), transcript
            variant 1, mRNA.
ACCESSION   NM_001389247 XM_006249300
VERSION     NM_001389247.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6053)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Dec 3, 2020 this sequence version replaced XM_006249300.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.1518479.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-505               JAXUCZ010000012.1  37836284-37836788
            506-634             JAXUCZ010000012.1  37846514-37846642
            635-739             JAXUCZ010000012.1  37847712-37847816
            740-1052            JAXUCZ010000012.1  37850424-37850736
            1053-1153           JAXUCZ010000012.1  37854229-37854329
            1154-1250           JAXUCZ010000012.1  37855546-37855642
            1251-1411           JAXUCZ010000012.1  37857131-37857291
            1412-1545           JAXUCZ010000012.1  37858955-37859088
            1546-1636           JAXUCZ010000012.1  37859216-37859306
            1637-1798           JAXUCZ010000012.1  37861639-37861800
            1799-1934           JAXUCZ010000012.1  37862547-37862682
            1935-2040           JAXUCZ010000012.1  37862756-37862861
            2041-2194           JAXUCZ010000012.1  37862953-37863106
            2195-2377           JAXUCZ010000012.1  37863571-37863753
            2378-2475           JAXUCZ010000012.1  37865509-37865606
            2476-2627           JAXUCZ010000012.1  37867591-37867742
            2628-2825           JAXUCZ010000012.1  37869509-37869706
            2826-2993           JAXUCZ010000012.1  37870734-37870901
            2994-3169           JAXUCZ010000012.1  37870992-37871167
            3170-3301           JAXUCZ010000012.1  37871677-37871808
            3302-3437           JAXUCZ010000012.1  37874934-37875069
            3438-3550           JAXUCZ010000012.1  37875881-37875993
            3551-3622           JAXUCZ010000012.1  37876097-37876168
            3623-3722           JAXUCZ010000012.1  37876524-37876623
            3723-3797           JAXUCZ010000012.1  37879816-37879890
            3798-3944           JAXUCZ010000012.1  37883520-37883666
            3945-4039           JAXUCZ010000012.1  37883749-37883843
            4040-4132           JAXUCZ010000012.1  37883932-37884024
            4133-4270           JAXUCZ010000012.1  37885881-37886018
            4271-4347           JAXUCZ010000012.1  37886565-37886641
            4348-4541           JAXUCZ010000012.1  37888562-37888755
            4542-6053           JAXUCZ010000012.1  37889720-37891231
FEATURES             Location/Qualifiers
     source          1..6053
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q15"
     gene            1..6053
                     /gene="Sbno1"
                     /note="strawberry notch homolog 1"
                     /db_xref="GeneID:304470"
                     /db_xref="RGD:1310005"
     exon            1..505
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     CDS             506..4684
                     /gene="Sbno1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein strawberry notch homolog 1; sno, strawberry notch
                     homolog 1"
                     /codon_start=1
                     /product="protein strawberry notch homolog 1 isoform 1"
                     /protein_id="NP_001376176.1"
                     /db_xref="GeneID:304470"
                     /db_xref="RGD:1310005"
                     /translation="MVEPGQDLLLAALSESGISPNDLFDVDGGDAGLATPTPPSVQQS
                     VPLSALELGLETEAAIPVKQEPEMMSTPALLNVRQQPPSTTTFVLNQINQLPTLGSTI
                     VMTKTPPATTNRQTITLTKFIQTTANTRPSVSAPAVRNAIPPAPAKDQVQLKDLLKNN
                     SLNELMKLKPPANIAQPVATAATDVSNGAVKKESSNKEVARVWINDMKMRSFSPTMKV
                     PVVREEDEPEEEDEEEMGHAETYAEYMPIKLKIGLRHPDAVVETSSLSSVTPPDVWYK
                     TSISEETIDNGWLSALQLEAVTYAAQQHETFLPNGDRAGFLIGDGAGVGKGRTIAGII
                     YENYLLSRKRALWFSVSNDLKYDAERDLRDIGAKNILVHSLNKFKYGKISSKHNGSVK
                     KGVIFATYSSLIGESQSGGKYKTRLKQLLHWCGDDFDGVIVFDECHKAKNLCPVGSSK
                     PTKTGLAVLELQNKLPKARVVYASATGASEPRNMAYMNRLGIWGEGTPFREFSDFIQA
                     VERRGVGAMEIVAMDMKLRGMYIARQLSFTGVTFKIEEVLLSQSYVKMYNKAVKLWVI
                     ARERFQQAADLIDAEQRMKKSMWGQFWSAHQRFFKYLCIASKVKRVVQLAREEIKNGK
                     CVVIGLQSTGEARTLEALEEGGGELNDFVSTAKGVLQSLIEKHFPAPDRKKLYSLLGI
                     DLTAPSNNSSPRDSPCKENKIKKRKGEEITREAKKARKIGGLTGSSSDDSGSESDVSD
                     NEESDYESSKNMSSGDDDDFNPFRDESSEDNEDDPWLIRKDHKKSKDKKKKKSIDPDS
                     IQSALLASGLGSKRPSFSSAPVISPASNSAPANSNSNSNSSLITSQDAVERAQQMKKD
                     LLDKLEKLAEDLPPNTLDELIDELGGPENVAEMTGRKGRVVSNDDGSISYESRSELDV
                     PVEILNITEKQRFMDGDKNIAIISEAASSGISLQADRRAKNQRRRVHMTLELPWSADR
                     AIQQFGRTHRSNQVTAPEYVFLISELAGEQRFASIVAKRLESLGALTHGDRRATESRD
                     LSRFNFDNKYGRNALEIVMKSIVNLDSPMVSPPPDYPGEFFKDVRQGLIGVGLINVED
                     RSGILTLDKDYNNIGKFLNRILGMEVHQQNALFQYFADTLTAVVQNAKKNGRYDMGIL
                     DLGSGDEKVRKSDVKKFLTPGYSTSGHVELYTISVERGMSWDEATKIWAELTGPDDGF
                     YLSLQIRNNKKTAILVKEVNPKKKLFLIYRPNTGKQLKLEIYADLKKKYKKVVSDDAL
                     VHWLDQYNSSADTCTHAYWRGNCKKASLGLVCEIGLRCRTYYVLCGSVLSVWTKVEGV
                     LASVSGTNVKMQIVRLRTEDGQRIVGLIIPANCVSPLVNLLSTSDQSQQLAVQQKQLW
                     QQHHPQSITNLSNV"
     exon            506..634
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            635..739
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            740..1052
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            1053..1153
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            1154..1250
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            1251..1411
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            1412..1545
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            1546..1636
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            1637..1798
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            1799..1934
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            1935..2040
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            2041..2194
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            2195..2377
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            2378..2475
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            2476..2627
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            2628..2825
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            2826..2993
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            2994..3169
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            3170..3301
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            3302..3437
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            3438..3550
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            3551..3622
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            3623..3722
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            3723..3797
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            3798..3944
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            3945..4039
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            4040..4132
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            4133..4270
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            4271..4347
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            4348..4541
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
     exon            4542..6053
                     /gene="Sbno1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccttgcccc ctcccccttc tcggaaaccc ggccccctca cccttcgccc accccagagc
       61 cgcggtaatg gaccgtttgg gttccggaat tcccttggat cccaactctg gtaccaggct
      121 agcgggactc ggcggagtcc ggtttgggtg gcaaaagcag agggggcagt caagatgggg
      181 ggggggatcc gcttccttca cctaggaagg aggcggggcg gtgatgggat gggagtgtgt
      241 gtgggggggt atggggaagt cacgtggtgc gtgtcgcgcg ctgtgtgcgc gcggcgcctg
      301 acccgtcgcc ccgccccctc ttcctgcggg gcggggggtc ggggggaggg gcatcaagat
      361 ggcggcgggg aggtaggcag agccggacgc cgcttctgcc gccgccgccg ccgccgccgc
      421 cgccgcctcc gctcctgtcg cctccagctc cacacccgtt cacggaccgg gagaagctat
      481 tctttcgtcg ggtccggcgg ggaaaatggt ggaaccaggg caagatttac tacttgcggc
      541 cttgagcgag agtgggatta gtccgaatga cctctttgat gttgatggtg gagatgctgg
      601 acttgccacc cctactcccc cttcagttca acagtcggtg ccacttagtg cattagaact
      661 aggtttggag acagaagcag caattcctgt taaacaagaa cccgagatga tgtctactcc
      721 ggcactgtta aatgtgaggc agcagcctcc atccactaca acatttgtgc tgaatcaaat
      781 caatcaactt ccaaccttgg gatctacaat tgtaatgact aaaacaccac ctgcaacaac
      841 gaataggcaa accatcactt tgactaagtt catccagacc actgcaaaca cacgcccttc
      901 agtttcagca ccagcagtac ggaatgccat cccccctgct cccgcaaaag accaagttca
      961 gctaaaggat ttactcaaaa ataatagttt aaatgaactc atgaaactga agccacctgc
     1021 caatattgct cagccagttg caactgcggc tactgatgtc agcaatggcg cagttaaaaa
     1081 ggagtcttct aataaagaag ttgcaagggt atggataaat gacatgaaga tgagaagctt
     1141 ttcccccact atgaaggttc ctgttgtgag agaagaagat gaaccagaag aagaagatga
     1201 ggaagaaatg ggtcatgcag aaacctatgc agagtatatg ccaataaaat taaaaattgg
     1261 cctgcgtcac cctgatgcgg tggtggagac aagctcactg tccagcgtca ctcctcctga
     1321 tgtttggtac aaaacgtcca tctctgagga gaccatcgat aatggctggc tctctgcatt
     1381 gcagcttgag gcagtcacct atgcggccca gcaacatgaa acattccttc ctaatggaga
     1441 ccgtgctggc ttcttaatag gcgatggtgc tggtgtgggc aaaggccgga cgatagcagg
     1501 gatcatatat gaaaactatt tgttgagtag aaaaagagca ttgtggttta gtgtatcaaa
     1561 tgacttaaaa tatgatgctg aaagagattt aagggatatt ggagcaaaaa acattttggt
     1621 ccattcatta aataagttta aatatggaaa gatttcttct aaacacaatg ggagtgtgaa
     1681 aaagggtgtt atttttgcta cctattcttc ccttattggt gaaagccagt ctggaggtaa
     1741 atataagacc aggttaaaac agcttctgca ctggtgtggt gacgacttcg atggagtgat
     1801 agtgtttgat gaatgtcaca aagcaaaaaa cttatgtcct gttggttctt caaagccaac
     1861 caagacaggc ttggctgttt tagaacttca aaacaaattg ccaaaagcca gagtcgtgta
     1921 tgccagtgcc accggtgctt ctgaaccacg caacatggcc tatatgaacc gtcttggaat
     1981 atggggtgag ggaactccat tcagagaatt cagtgatttt atccaagctg tggaacgcag
     2041 aggtgttggt gccatggaaa ttgttgctat ggatatgaag cttagaggaa tgtacattgc
     2101 acgacagctg agctttactg gagtgacctt caaaattgag gaagttcttc tttctcaaag
     2161 ctacgttaaa atgtataaca aagcagtcaa actgtgggtt atcgctagag agcgatttca
     2221 gcaagctgca gatttgattg atgctgagca gagaatgaag aaatctatgt ggggtcagtt
     2281 ctggtctgct caccagaggt tttttaagta cctgtgtata gcgtccaaag tgaagagggt
     2341 ggtccagcta gcccgggaag aaatcaagaa tgggaagtgt gttgtaattg gtctgcagtc
     2401 cacaggagaa gccagaactt tagaggcctt ggaagagggt ggaggagaac taaatgattt
     2461 tgtttcaact gccaaagggg tattgcagtc actgattgaa aaacacttcc ctgctccaga
     2521 caggaagaaa ctctatagtt tgctaggaat cgacttgaca gccccaagta acaacagttc
     2581 accaagagat agtccttgta aagagaataa aataaagaag cggaaaggtg aagaaattac
     2641 tcgagaagcc aaaaaagcac gaaaaattgg tggccttact ggaagcagct ctgacgacag
     2701 tgggagtgaa tctgatgtct ctgataatga agaaagcgac tatgagagct ctaaaaacat
     2761 gagctctggt gatgacgatg atttcaatcc cttcagagat gagtccagcg aagacaacga
     2821 ggacgatcca tggttaatta ggaaagatca taagaaaagc aaagataaaa aaaagaagaa
     2881 aagtatcgat ccagattcca ttcaaagtgc cttgttagca tctggtcttg gatcaaagcg
     2941 gcccagtttc tcctcagcac cagtcatctc acctgcttcc aacagtgcac cagccaacag
     3001 taacagcaac agtaacagca gcctcataac gagccaagat gctgttgaaa gggcacagca
     3061 gatgaagaaa gacctccttg ataagctgga aaagttagct gaggacctcc cgcctaatac
     3121 cctggatgag cttatcgatg agctcggtgg tcctgaaaat gtggctgaga tgactggccg
     3181 caaggggcgg gtggtgagca atgatgatgg aagcatatcc tacgagtcaa ggtctgaact
     3241 tgatgtgcct gtggagattc tgaacatcac ggagaagcag aggttcatgg atggagacaa
     3301 gaatattgct attatctcag aagctgccag ctcaggtatt tcattacaag cagatcggag
     3361 agctaagaat caaaggagaa gagttcatat gactttagag ttaccctgga gtgctgatcg
     3421 ggccattcag cagttcggaa gaacacacag gtcaaaccaa gtgactgctc cagagtatgt
     3481 ttttctgatt tcggagctgg ctggagaaca gaggtttgcg tctattgttg ctaagagact
     3541 tgagagtctg ggggcactta cacatggcga cagaagagca acagaatcta gagatctcag
     3601 caggttcaac tttgacaaca agtatggaag aaatgcttta gaaattgtta tgaagtccat
     3661 tgtaaacttg gattctccta tggtatcacc acctccagac taccctggag aattctttaa
     3721 agatgttcgg caaggactga taggagtggg cttgattaat gtagaagatc gctcaggaat
     3781 tcttactctt gataaagact ataataatat aggaaaattc ttaaacagaa ttctgggcat
     3841 ggaggtgcat cagcagaatg cgttgtttca gtattttgca gacacactca ctgcagttgt
     3901 tcagaatgcc aagaagaatg ggagatacga catgggaatc ctagatctgg gttctggaga
     3961 tgaaaaggtg aggaagagtg atgtcaagaa gtttctgact ccaggatact caacctctgg
     4021 ccatgtagag ttatatacaa ttagtgtgga gaggggaatg tcctgggatg aagcaaccaa
     4081 gatttgggcc gagctgacag gacccgacga tggcttttac ttatcgttgc aaataagaaa
     4141 caacaaaaaa actgcaatct tagttaaaga agtaaacccc aagaagaaac tattcttaat
     4201 ttatcgacca aacactggga agcaactgaa actagaaatt tatgctgatc tgaaaaagaa
     4261 atataagaag gtcgtctctg acgatgccct ggtacactgg ctggatcagt acaactcctc
     4321 tgcagacacc tgtactcacg catactggcg tggcaattgc aaaaaagcaa gcttaggatt
     4381 ggtttgtgag attggtctcc gctgccgcac ttactatgta ctgtgtggct cagtactgag
     4441 cgtctggaca aaggtggagg gtgttctggc ctctgtcagc ggcacaaatg tgaaaatgca
     4501 gatagtgcgg ctcaggaccg aagacgggca gcggattgta ggtttaatca ttccggcaaa
     4561 ttgcgtgtct cctcttgtaa atctcctgtc aacttcagac cagtctcagc aactggcagt
     4621 ccaacaaaag cagctgtggc aacagcatca cccacagagc atcaccaact tgagcaacgt
     4681 gtaaagagca gcggcttcct cgcgtggttg agtgctgtga gagcaccact tgcataaaaa
     4741 tcagggacac tttccaaaga attttttttt taacttcagt tgtgctctct agttaatttg
     4801 gggggtgggg gagggttgtg gaaaacctgg aaataggcag caaagctgac agcgaacaga
     4861 gcagagggga cacatgtctt tcctcctgct tccatggggc tgcctgtgcg cttttacctt
     4921 gggtgagcag agcggatgta tgtgtgtgtg agcatatgtg tcagtctgtc tgtgagtttg
     4981 ttaaacgcta caaggccaca gttggttgaa aaggcttgga acttctcaaa ctggctttac
     5041 ttttcctttc tacagtgctc agggttaaca cagtacatcc ttgtcatgac tgtgggagtt
     5101 ccccgaatgc atgtatttca agtctaaata ctgaatatat atattggttt attttccaac
     5161 ttaaacaatg tctcctacag catgaagtga agggttgcgt tgcgtgccat gcattcaggt
     5221 tcatttgtag cttttgttga cggtgcatgt ctttgaaagc atgtgtaatc aagattacca
     5281 cagaagtcac atatggagag aaacattgga catgtacagc attgggtttt gcatttctag
     5341 tgttgatacc tgggtgttgc ttctagccct caaccctgcc cgctcctccc tgacccaagt
     5401 ttcttgttaa agtagtaagt gcatactttt tttttttgtg ataaaactct ttaaaagttc
     5461 attttaatat gttaatagta ttcctaattt gtgctgcaaa catggctctg agccttatca
     5521 taagttacgt tttccttaac ttaagcatag ttttaggaag aaatatgatt ggcttctgtc
     5581 ttacacacaa tcttttctac ttcattatct gactctgctt tgtcattcga accggaaacc
     5641 gtacttgagt tgtaaactag acagtgagaa acacttggct tctttctgct gtatgttgtt
     5701 ctcgttaccc agtaacttga atattgttta atgtgctgta agacattgtc gagattatct
     5761 ccgctgttta aaatgctaat gtacaaatgt gaatagacac ttatctataa catgggtaag
     5821 ttttgtttcg cctataatag atgtttataa aaaaaaattg agtgagggga caattggtct
     5881 tttggttttt atctccttac ctccccttcc ccaaattttt tctcccctct cccctccccc
     5941 cttttttgct tgcacaggtt gcactattaa aaaattgaga ttgtataaat ctggtttaaa
     6001 actacaagac aacaaagtct tgtagatgtt gaataaaaaa gttattatac taa
//
