LOCUS       XM_039091530            4341 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SET binding factor 2 (Sbf2),
            transcript variant X9, mRNA.
ACCESSION   XM_039091530
VERSION     XM_039091530.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091530.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4341
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4341
                     /gene="Sbf2"
                     /gene_synonym="Mtmr13; RGD1559442"
                     /note="SET binding factor 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 5 ESTs, 1 long SRA read, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 61 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:691042"
                     /db_xref="RGD:1588657"
     CDS             165..3962
                     /gene="Sbf2"
                     /gene_synonym="Mtmr13; RGD1559442"
                     /codon_start=1
                     /product="myotubularin-related protein 13 isoform X9"
                     /protein_id="XP_038947458.1"
                     /db_xref="GeneID:691042"
                     /db_xref="RGD:1588657"
                     /translation="MARLADYFIVVGYDHEKPGPGEGLGKIIQRFPQQDWDDTPFPQG
                     IELFCQPGGWHLSRERKQPTFFVVVLTDIDSDRHYCSCLTFYEAEINLQGTKKEEIEG
                     EEVSALIQPAEVFAPKSLVLVSRLDYPEIFRACLGLIYTVYVDSLSVSLESLIANLCA
                     CLVPAAGGSQKLFSLGAGDRQLIQTPLHDSLPVTGTSVALLFQQLGIQNVLNLFCAVL
                     TENKVLFHSASFQRLSDACRALESLMFPLKYSYPYIPILPAQLLEVLSSPTPFIIGVH
                     SIFKTDVHELLDVIIADLDGGTIKIPECIHLSSLPEPLLHQTQAALSLILHPDLEVAD
                     HAFPPPRTALSHSKMLDKEVRAVFLRLFAQLFQGYRSCLQLIRIHAEPVIHFHKTAFL
                     GQRGLVENDFLTKVLNGMAFAGFVSERGPPYRACDLFDELVAFEVERIKVEENNPLKM
                     IKHIRELAEQLFKNENPNPHMAFQKVPRPTEGSHLRVHILPFPKINEARVQELIQENL
                     AKNQNATPATRTEKKCIVPAGPPVVSIMDKVITVFNSAQRLEVVRNCISFIFENKTLE
                     TEKTLPAALRALKGKAARQCLTDELGLHVQQNRAILDHQQFDYIIRMMNCTLQDCSSL
                     EEYNIAAALLPLTSAFYRRLAPGVSQFAYTCVQDHPIWTNQQFWETTFYSAVQEQVRS
                     LYLSAKEDNHTPHQKQKELPDGQYQERTAMDLAAEQLRLWPTLSKATQQELVQHEEST
                     VFSQAIHFANLMVNLLVPLDTSKNKLLRASAPGDWESGSNSIVTNSIAGSVAESFDTE
                     SGFEDSENNDVANSVVRFIARFIDKVCTESGVTQDHIRSLHCMIPGIVAMHIETLEAV
                     HRESRRLPPIQKPKILRPALLPGEEIVCEGLRVLLDPDGREEATGGLLGGPQLLPAEG
                     ALFLTTYRILFRGTPHDQLVGEQTVVRSFPIASITKEKKITMQNQLQQNMQEGLQITS
                     ASFQLIKVAFDEEVSPEVVDIFKKQLMKFRYPQSIFSTFAFAAGQTTPQIILPKQKEK
                     NTSFRTFSKTIVKGAKKAGKMTIGRQYLLKKRTGTIVEERANRPGWNEEDDISVSDDC
                     ELPTSTTLKASEKSTMEQLVEKACFRDYQRLGLGTISGSSSRSKPEYFRVTASNRLYS
                     LCRSYPGLLVIPQAVQDSSLPRVARCYRHNRLPVVCWKNSRSGTLLLRSGGFHGKGVV
                     GLFKSQNSPQAVSTSSLESSSSIEQEKYLQALLTAVIVHQKLRGNSTLTVRPTLALSP
                     VIM"
ORIGIN      
        1 cgcggcgcag gcgcagtgcg cgcctcggtt gtcaaacatg gctgaagcgc cgctgctacc
       61 gctacagccg ccgaagggaa aatgctgagc tcgcccggga cgggtgggtg gcggcggcga
      121 gggcggcgac gggaacccgc ttcccgggcg cggcggcggc ggtcatggcc cggttggccg
      181 actacttcat tgtggtaggc tacgaccacg agaagccagg gccaggagaa ggtctgggga
      241 aaataattca gagattccca cagcaggact gggatgacac accctttcca cagggaattg
      301 aattgttttg tcaacctggt ggatggcacc tgtccagaga acggaaacag ccaacattct
      361 ttgtggtagt cctaacagat attgactcgg atcgacatta ctgctcatgc ctaaccttct
      421 atgaggcaga gatcaatctc cagggaacga agaaggaaga gatcgagggt gaagaagtat
      481 ctgctttaat tcaacctgca gaagtatttg cacccaaaag cctggtgttg gtatccagat
      541 tagactatcc agaaatcttt agggcttgcc tgggtctgat ctatactgtg tacgtggaca
      601 gcctgagtgt ctccttggaa agcctcatcg caaatctttg tgcttgcctt gttccagctg
      661 ctggagggtc tcagaagctg ttttccttgg gtgcaggaga cagacaactg attcagactc
      721 ctttgcatga cagcctccct gttacaggca ccagtgtggc tcttttattt cagcaattag
      781 gcattcaaaa cgtcctcaac ctcttttgtg cagtccttac agaaaataag gttctcttcc
      841 attcagcaag tttccagaga cttagtgatg cctgtagagc cctggaatct ttaatgtttc
      901 ctcttaaata cagttaccct tatattccca ttcttccggc tcagctccta gaagttttga
      961 gttctccaac tcctttcatt attggcgtac actccatctt taaaactgac gtccatgagc
     1021 tcttagatgt aatcatagca gatttggatg gaggcactat taaaattcct gaatgcattc
     1081 acctctcttc cctcccggaa ccacttcttc atcagactca agcagcactt tctctgattt
     1141 tgcacccgga tttggaagta gcagatcatg ccttccctcc tccacgaaca gctttatccc
     1201 actcaaaaat gctggataaa gaagttcgag cagtttttct tagactattt gcacaactgt
     1261 tccaagggta caggtcatgc ctccagctta tacggatcca tgccgagcct gtgatacatt
     1321 ttcacaaaac agctttcttg gggcagcgtg gtttggttga gaatgatttc ctcactaaag
     1381 tactcaatgg aatggcattt gcaggttttg tttcagaaag aggacctccc tatagagcct
     1441 gtgatctctt tgatgagttg gtagcttttg aagtagagag aattaaagtt gaagaaaata
     1501 atccactgaa gatgataaag cacatcagag aacttgctga gcaactcttc aaaaatgaga
     1561 atccaaaccc tcatatggca ttccagaaag ttccacgtcc aacagaagga tcccacttga
     1621 gagttcatat tcttcctttc ccaaaaatta atgaagcccg agttcaagaa ctaatacagg
     1681 aaaatcttgc taagaaccag aatgcaactc ctgctacacg aacagaaaag aaatgcatag
     1741 tgccagcagg gccacctgtt gtttcaataa tggataaagt gataacagtt tttaacagtg
     1801 cacagagact ggaagttgtt agaaactgca tctcattcat atttgaaaat aaaactttgg
     1861 agactgagaa gactcttccc gctgccttga gggcccttaa aggaaaagca gcaagacagt
     1921 gtctcactga tgaactgggt ttgcatgttc agcagaaccg ggcaatattg gaccatcaac
     1981 agtttgacta cataataagg atgatgaatt gtactctgca ggattgttca agtttggaag
     2041 agtataacat cgctgcagca ctgctccccc tgaccagtgc tttctatagg agactcgccc
     2101 caggagtcag ccagtttgcc tacacgtgtg tgcaggacca ccccatctgg actaatcagc
     2161 agttttggga gacaacgttt tacagtgcag tgcaggagca ggttcgctcc ctgtacctct
     2221 cagcgaagga agacaatcat accccacatc agaagcagaa ggagcttccc gatggccaat
     2281 atcaggagag gacggccatg gacttggcag ccgagcagct tcgcctttgg cctactctga
     2341 gcaaggcaac tcagcaggag ctggtgcagc acgaggaaag cactgtcttc agtcaggcca
     2401 ttcactttgc aaacctcatg gttaacctgc tagttccact agacacaagt aaaaacaagc
     2461 tccttcgagc ctcagctcca ggagactggg agagtgggag caacagcatt gtcacaaaca
     2521 gtattgcagg aagtgtggct gagagctttg atacggagag tggatttgaa gattcggaaa
     2581 acaatgatgt ggccaactct gttgtaaggt tcattgcccg gtttattgac aaggtttgta
     2641 cagagagtgg agtgactcag gaccacatca ggagtctcca ctgcatgata ccaggaattg
     2701 tagctatgca cattgagacc ctagaggcag tacatcgaga gagtagaaga cttccaccta
     2761 tccagaagcc caagattctt cggccagctc tactgccagg agaagaaatt gtatgcgaag
     2821 gtcttcgagt cctactagat cctgatggcc gggaagaagc cactggaggt ctccttggag
     2881 gtcctcagct cttgcctgca gaaggcgcct tgttcctcac cacatacaga attctcttca
     2941 gagggacgcc acatgaccag ctagttggtg aacaaacagt cgtgcggagc tttcccattg
     3001 cttccatcac caaggagaag aagataacca tgcagaacca gctacagcag aacatgcaag
     3061 aagggttgca gattacatca gcatctttcc agttgattaa agtagcattt gatgaagaag
     3121 tcagcccaga agtggtagac atctttaaga aacagctaat gaagttccgt taccctcagt
     3181 ccattttcag caccttcgct tttgctgctg gacaaactac cccacaaatc attttaccca
     3241 agcagaagga aaagaacacc tccttccgaa ctttctcaaa aacaattgtg aaaggtgcca
     3301 agaaggcagg aaaaatgaca attgggaggc agtatttatt aaagaagaga acaggaacaa
     3361 ttgtggaaga gagggcaaat cgtccagggt ggaatgaaga agatgatatt tctgtttcag
     3421 atgattgtga actccccaca agtacaactc tgaaggcctc agagaaatct acaatggaac
     3481 agttggtgga aaaggcatgt ttcagagatt atcagcggtt aggtttggga accataagtg
     3541 gcagctcctc ccgttcaaaa ccagagtatt tccgagtcac tgcctccaac aggctatatt
     3601 cgctgtgccg gagctatcct ggccttttag tcatacctca agctgtacaa gacagtagtt
     3661 taccaagagt agcccgctgc tatcggcaca atcgcctgcc cgtcgtatgt tggaagaatt
     3721 caagaagtgg tactctgctc ctccgatctg gaggattcca tgggaaggga gttgttggtc
     3781 tgttcaaatc acagaactcc cctcaagccg tttctacctc ctctttagaa tcttccagta
     3841 gcatagagca agaaaagtac ttgcaagccc tattgactgc agttattgtc catcagaaac
     3901 tcagaggcaa cagtactctt actgtcaggc caacacttgc tctgtcccca gttatcatgt
     3961 gatggaaccc caaagggttc atgtagaggt aaccctgatt gttagacagg agcatgtgac
     4021 ttgagaagtt ggtctccttg gcttactcag ctctctgaat tacctcaaca tgagcagaaa
     4081 gtggcttttc ttgcaaagta acaccatgca tgcctttctt cgtttaccat tggactctct
     4141 gattgcactt gccaaaccta actctaagct ttcaaatatg tgttatctct gctgaaacaa
     4201 taacattgcc atgttatctc taagaaagct tttgggactt aaaaagtaca atgtttggca
     4261 gcaattagat atgctacatg tgaagataac gttttgtcat ttgagtaatg ttaacttgaa
     4321 cacgatgatt ttgttctttt t
//
