LOCUS       NM_001415797            2994 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus stabilizer of axonemal microtubules 2 (Saxo2),
            transcript variant 1, mRNA.
ACCESSION   NM_001415797 XM_006229473
VERSION     NM_001415797.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2994)
  AUTHORS   Stauber,M., Weidemann,M., Dittrich-Breiholz,O., Lobschat,K.,
            Alten,L., Mai,M., Beckers,A., Kracht,M. and Gossler,A.
  TITLE     Identification of FOXJ1 effectors during ciliogenesis in the foetal
            respiratory epithelium and embryonic left-right organiser of the
            mouse
  JOURNAL   Dev Biol 423 (2), 170-188 (2017)
   PUBMED   27914912
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Dec 30, 2022 this sequence version replaced XM_006229473.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.4055.1,
                                           SRR26643429.2458.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-135               JAXUCZ010000001.1  146047502-146047636 c
            136-315             JAXUCZ010000001.1  146044891-146045070 c
            316-518             JAXUCZ010000001.1  146042509-146042711 c
            519-2994            JAXUCZ010000001.1  146032694-146035169 c
FEATURES             Location/Qualifiers
     source          1..2994
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q31"
     gene            1..2994
                     /gene="Saxo2"
                     /gene_synonym="Fam154b; RGD1562653"
                     /note="stabilizer of axonemal microtubules 2"
                     /db_xref="GeneID:293061"
                     /db_xref="RGD:1562653"
     exon            1..135
                     /gene="Saxo2"
                     /gene_synonym="Fam154b; RGD1562653"
                     /inference="alignment:Splign:2.1.0"
     CDS             98..1462
                     /gene="Saxo2"
                     /gene_synonym="Fam154b; RGD1562653"
                     /note="isoform 1 is encoded by transcript variant 1;
                     family with sequence similarity 154, member B"
                     /codon_start=1
                     /product="stabilizer of axonemal microtubules 2 isoform 1"
                     /protein_id="NP_001402726.1"
                     /db_xref="GeneID:293061"
                     /db_xref="RGD:1562653"
                     /translation="MRNWCLCQICTCGRHRCPHGITRVYEHSGISCPTTEYMEKYPKY
                     GDVLPPQSLKPKPGFQAYRGKMEGVTTFKSDYRPYEVVKQPRHMPEEYKPKQGEIDLG
                     TTYKRDFNPYKVQPVVKVRPVERQEVKKGKLDTVPTYKDDYRSWDIQKCELCKPEQAY
                     HPPDVKFGNSTTFQDDYVPREIQPRPSFKPCSVVKCPVGPFNGDTSHRRDYVPHQLEV
                     KFARPKEVYKPTDQPFEDLTTHRNDFQGLTGETAKICRPPYTRVTQNIQFKGSTEFRD
                     SFQPWEIPPPKVKKVAEYVPPSGSMQLDSTSHLDYVPYRASRVVAIRPVSHRRQSNFP
                     FQGKSTMKEDFPAWESCRQGLIKQQQQIPNPSGKFEGLSTFRSHFVPHELIPTESCKP
                     LNEALKSSVPLDDVTMYSIQFTPKKQEICPASYPSPPGYIFENTNSQGHKFFRKIIPA
                     VKAF"
     exon            136..315
                     /gene="Saxo2"
                     /gene_synonym="Fam154b; RGD1562653"
                     /inference="alignment:Splign:2.1.0"
     exon            316..518
                     /gene="Saxo2"
                     /gene_synonym="Fam154b; RGD1562653"
                     /inference="alignment:Splign:2.1.0"
     exon            519..2994
                     /gene="Saxo2"
                     /gene_synonym="Fam154b; RGD1562653"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actaggaatt ccgcagtcgc cttgacgacg gcagacgctg cagcctctct gaagtgccag
       61 cttaagccct aaggagaagg acgctggagc acagagcatg aggaactggt gtctgtgcca
      121 gatttgcacc tgcggacggc atcgttgtcc acatggaatc acgagggttt atgagcattc
      181 tggcatatct tgccctacga cggagtatat ggaaaaatac ccaaaatatg gtgatgttct
      241 cccaccgcag agtcttaaac caaagccagg atttcaagca taccgtggta aaatggaagg
      301 agtaaccaca tttaagtcag attatcgccc ttatgaagta gtcaagcagc ctcgccacat
      361 gcctgaagaa tataaaccca aacaggggga aattgatctt ggtactacct acaagcgaga
      421 ttttaatcct tacaaagtac agcccgtggt aaaagtccgg cctgtggaaa gacaagaagt
      481 taaaaaagga aagttggaca ctgtcccaac ttataaagat gattatagat cttgggatat
      541 tcagaaatgt gaactgtgta aaccagagca agcttaccat cccccagatg tgaaattcgg
      601 aaactcaact acatttcagg atgactatgt tccccgggag atacagccta ggccaagctt
      661 taagccctgc tctgtggtca agtgtcctgt aggccctttt aatggtgata caagtcatcg
      721 tcgagattat gtacctcatc agctagaagt caagtttgca aggccaaaag aagtttataa
      781 gcctactgac cagccttttg aggatctcac cactcaccgg aatgactttc agggtcttac
      841 tggtgaaact gcaaaaatct gcagacctcc ctataccaga gtgacccaaa acattcagtt
      901 taaaggaagc actgaattcc gtgacagttt ccaaccgtgg gaaatcccac cacccaaagt
      961 gaagaaagta gcagagtatg tgcctccttc aggaagcatg cagttggaca gcaccagcca
     1021 ccttgactat gttccctacc gggccagccg tgttgttgcc attcggccag tttctcacag
     1081 aaggcaaagc aattttcctt tccaaggaaa gagcaccatg aaggaagatt ttccagcatg
     1141 ggaaagttgt cgtcaaggac ttattaagca gcagcaacaa attcccaacc catctggaaa
     1201 atttgagggt ttgagcactt tcagatctca ctttgtgcca catgaattga ttccaacaga
     1261 gagctgcaaa cctttaaatg aagctcttaa gagttcagtt ccacttgatg atgtcaccat
     1321 gtattctata cagttcacac cgaagaaaca ggaaatctgc ccagctagct atccttctcc
     1381 tcctggttat atatttgaaa atacaaattc ccaagggcat aaattctttc gcaagattat
     1441 tcctgcagtg aaggcctttt agtaattaat gtttaaaaga aagctaatga gagtttgatt
     1501 ttttaaagag aaactccaac ttttacagta aaaaatatta ggagagctat agaatttcat
     1561 ttttagcttt ttgaacaagt tggaacataa agatcagaat taacaaatct ttttttaacc
     1621 aagtctgtct tggttagcac aggctaccct ggaacttgca gtgcacctgt gtcagtcttc
     1681 tgatctaaga ttgttcttta acaggcattt ctgaaggcta atgatgggca cactcattta
     1741 tacatgctgt ctcataactt gtcctcagtc tgatatcatg tacactaatt ttacacttat
     1801 gcaattatgc accattatca acaccattat catgcacaat tagaacaaaa ttgaaaatga
     1861 gacataaatt actctttgtt aaaaatccag attttattca ttcattcact cattcattca
     1921 ttcatcttca acacatctac agagcatagg acaagtcaag ttttggttga tgatgtcaga
     1981 gaacagaagc tctgttcctt accctgttca aaatagcaag agacattgtg gcttgaagag
     2041 gaaatgtcct ataggctggg aatcagcaaa ccagagttca aatactaata tcttcagttt
     2101 ctgtttgagc cactgtaagc aatctctgca tacacacttc tgtggttcat gtgtaaaaga
     2161 aaactggttc tctctacctc atgaaagttt gttgggagca tcaaattata taaaacattt
     2221 gaaggtgtaa agtacaaatg taaggggcta ttagcaaacc ctcagataac gttttgtact
     2281 ttttccttgt caaataagga cagttacaaa ctcgatactc attacctggt ctccatccag
     2341 caatgactgt aaaataactt aatttgcttt gagtgtatga gtgaaatgtg tttgtaggag
     2401 gcgcctgccc actgtagctt cataaacacc ctatatgtta cagcagaaaa tagagaacct
     2461 acattaaata cttggcggta aatggctgta ttttcaaaag gaaaaatatt tgctgaaaat
     2521 gtggtaggga agacttccaa ttctgaaaaa aatcttcagg ataaacctag gtatctgtgc
     2581 atgcattggc cacatccaga aacactgttc atttataagg gccataatta ccttcttcat
     2641 aactgaaagt ataaagaaag aaggaaggag aaaagatacc agtaagggac atggaaatgg
     2701 catactatat gtataaatgc tgaaagcttt tagtgaacta aaatcaagtg agtgttttaa
     2761 taaatgatca aataattatg tatggaaaat aagattgact ttaatttaaa atgaatttta
     2821 atgttttcat agttgtttaa gaatattact aagggtgaat tcaaaatatt taatacttgt
     2881 ttttaattaa ttaaaagtaa ttctccatat ttgcatttat tataaaaaga tatctgaaaa
     2941 attttgtttt atgtataatc tgattaatta aatgtattga ttttcatgaa gtca
//
